Wall clock time and date at job start Tue Mar 31 2020 18:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00150 * 2 1 4 4 C 1.52991 * 109.47282 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47562 * 304.99883 * 4 3 2 6 6 C 1.53003 * 109.47031 * 65.00169 * 4 3 2 7 7 C 1.53006 * 109.47361 * 184.99586 * 4 3 2 8 8 C 1.50694 * 109.47019 * 175.00188 * 7 4 3 9 9 N 1.29944 * 126.28847 * 89.98367 * 8 7 4 10 10 O 1.21300 * 110.25251 * 179.97438 * 9 8 7 11 11 C 1.33642 * 109.81034 * 359.97438 * 10 9 8 12 12 C 1.50700 * 126.55191 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47293 * 270.02751 * 12 11 10 14 14 C 1.38328 * 119.96972 * 89.99434 * 13 12 11 15 15 C 1.38275 * 120.13835 * 180.02562 * 14 13 12 16 16 C 1.38123 * 120.06977 * 0.28020 * 15 14 13 17 17 C 1.38853 * 119.93133 * 359.45069 * 16 15 14 18 18 O 1.35749 * 120.07112 * 180.27775 * 17 16 15 19 19 C 1.34833 * 116.99801 * 354.75701 * 18 17 16 20 20 H 1.07999 * 120.00283 * 5.08278 * 19 18 17 21 21 C 1.38658 * 119.99720 * 185.08053 * 19 18 17 22 22 N 1.31553 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99773 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46994 * 60.00056 * 23 21 19 25 25 H 1.48495 * 109.46935 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47146 * 300.00259 * 23 21 19 27 27 C 1.38080 * 119.96292 * 270.02113 * 13 12 11 28 28 N 1.31127 * 106.89760 * 0.22731 * 11 10 9 29 29 H 1.08997 * 109.46885 * 60.00276 * 1 2 3 30 30 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47140 * 300.00303 * 1 2 3 32 32 H 1.09003 * 109.47059 * 59.99519 * 3 2 1 33 33 H 1.08997 * 109.46854 * 300.00135 * 3 2 1 34 34 H 1.09003 * 109.47033 * 180.02562 * 6 4 3 35 35 H 1.08999 * 109.46932 * 299.99541 * 6 4 3 36 36 H 1.08996 * 109.47181 * 59.99481 * 6 4 3 37 37 H 1.09000 * 109.46352 * 55.00217 * 7 4 3 38 38 H 1.08999 * 109.47195 * 295.00495 * 7 4 3 39 39 H 1.09001 * 109.47395 * 150.02322 * 12 11 10 40 40 H 1.08998 * 109.47262 * 30.02419 * 12 11 10 41 41 H 1.08001 * 119.92799 * 0.02562 * 14 13 12 42 42 H 1.08000 * 119.96093 * 180.02562 * 15 14 13 43 43 H 1.07996 * 120.03245 * 179.70156 * 16 15 14 44 44 H 0.96999 * 119.99776 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.03814 * 359.95608 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9962 0.5364 -1.3064 7 6 4.1574 2.5769 0.1263 8 6 5.6537 2.4493 0.2504 9 7 6.5084 2.4373 -0.7284 10 8 7.6370 2.3221 -0.2990 11 6 7.6086 2.2480 1.0351 12 6 8.7960 2.0997 1.9512 13 6 9.0781 0.6363 2.1750 14 6 9.9390 -0.0388 1.3286 15 6 10.1999 -1.3816 1.5305 16 6 9.5967 -2.0544 2.5751 17 6 8.7363 -1.3782 3.4299 18 8 8.1464 -2.0354 4.4609 19 6 8.3511 -3.3659 4.5359 20 1 9.0268 -3.8482 3.8451 21 6 7.6942 -4.1151 5.5002 22 7 6.8708 -3.5278 6.3414 23 14 7.9773 -5.9587 5.6037 24 1 9.4154 -6.2249 5.8606 25 1 7.1634 -6.5230 6.7101 26 1 7.5776 -6.5935 4.3221 27 6 8.4764 -0.0293 3.2246 28 7 6.3498 2.3235 1.3943 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 5.0828 0.4499 -1.3058 35 1 3.5533 -0.4555 -1.3960 36 1 3.6809 1.1525 -2.1485 37 1 3.7603 3.0735 1.0116 38 1 3.9149 3.1644 -0.7593 39 1 8.5801 2.5784 2.9063 40 1 9.6668 2.5721 1.4967 41 1 10.4083 0.4840 0.5084 42 1 10.8728 -1.9059 0.8681 43 1 9.7971 -3.1044 2.7294 44 1 6.4110 -4.0520 7.0157 45 1 7.8045 0.4984 3.8853 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844885188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:37 Heat of formation + Delta-G solvation = 7.639863 kcal Electronic energy + Delta-G solvation = -27692.017645 eV Core-core repulsion = 23678.632589 eV Total energy + Delta-G solvation = -4013.385055 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.46276 -39.14157 -38.52935 -36.88872 -36.52839 -34.90173 -33.40686 -32.29205 -30.99956 -29.24964 -28.21669 -27.46702 -27.05126 -25.67500 -25.28430 -23.52946 -22.11007 -21.54550 -20.80741 -20.29723 -18.10412 -17.74927 -17.28255 -16.92496 -16.61033 -16.19952 -15.48942 -15.15832 -15.15412 -14.69665 -14.46267 -14.29161 -13.99386 -13.69613 -13.55884 -13.53411 -13.02773 -12.68973 -12.65392 -12.52448 -12.35483 -11.90804 -11.79140 -11.68968 -11.57100 -11.31588 -11.14072 -11.13325 -10.94944 -10.85530 -10.82340 -10.80937 -10.68605 -10.48633 -9.86401 -9.74924 -9.37611 -8.86032 -8.21458 -7.30098 -6.45984 -4.05422 1.22937 1.93720 2.29040 2.34553 2.99990 3.12637 3.14696 3.16817 3.43936 3.80458 3.95430 4.08491 4.49254 4.65266 4.71279 4.87196 4.91682 5.03500 5.08266 5.09637 5.13895 5.18890 5.19828 5.27268 5.38342 5.46285 5.46778 5.54231 5.57699 5.70218 5.72862 5.82802 5.87780 5.93775 6.09042 6.10252 6.13946 6.23285 6.28559 6.56487 6.83586 6.96552 7.01413 7.15636 7.29463 7.38567 7.72646 7.97884 8.27948 8.99092 9.67865 10.71635 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008142 B = 0.003425 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3438.144783 B = 8173.657080 C =10778.527993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.070 3.930 4 C -0.089 4.089 5 H 0.090 0.910 6 C -0.143 4.143 7 C -0.020 4.020 8 C 0.174 3.826 9 N -0.387 5.387 10 O 0.074 5.926 11 C 0.201 3.799 12 C 0.019 3.981 13 C -0.062 4.062 14 C -0.200 4.200 15 C -0.075 4.075 16 C -0.227 4.227 17 C 0.151 3.849 18 O -0.175 6.175 19 C -0.394 4.394 20 H 0.092 0.908 21 C 0.041 3.959 22 N -0.860 5.860 23 Si 0.940 3.060 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.167 4.167 28 N -0.476 5.476 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.271 0.729 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.848 11.805 -12.467 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.007 4.007 4 C -0.108 4.108 5 H 0.108 0.892 6 C -0.201 4.201 7 C -0.059 4.059 8 C -0.099 4.099 9 N -0.095 5.095 10 O 0.016 5.984 11 C -0.019 4.019 12 C -0.020 4.020 13 C -0.063 4.063 14 C -0.219 4.219 15 C -0.093 4.093 16 C -0.246 4.246 17 C 0.097 3.903 18 O -0.078 6.078 19 C -0.470 4.470 20 H 0.109 0.891 21 C -0.164 4.164 22 N -0.494 5.494 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.187 4.187 28 N -0.209 5.209 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.145 0.855 44 H 0.081 0.919 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.631 11.729 -12.625 18.129 hybrid contribution 0.091 -0.867 0.089 0.876 sum -5.540 10.862 -12.535 17.487 Atomic orbital electron populations 1.22741 0.81048 1.02867 0.99809 1.87919 1.19582 1.27626 1.95360 1.22491 0.92996 0.84946 1.00235 1.21075 0.93174 0.95660 1.00935 0.89200 1.21790 1.01371 1.01239 0.95650 1.19890 0.83637 0.98065 1.04342 1.25568 0.99615 1.00753 0.83960 1.74590 0.90260 1.21428 1.23266 1.85271 1.24789 1.65287 1.23005 1.28787 0.95747 0.94321 0.83054 1.19133 0.90275 0.96081 0.96471 1.18849 0.98627 0.92409 0.96456 1.20471 1.04417 0.95142 1.01837 1.20720 0.98024 0.94015 0.96551 1.21244 1.03113 1.01295 0.98975 1.19297 0.91468 0.91801 0.87697 1.83983 1.62725 1.22168 1.38914 1.21279 1.27688 0.79826 1.18224 0.89110 1.25284 0.95447 1.00347 0.95299 1.70027 1.25728 1.36589 1.17101 0.85792 0.78729 0.80548 0.78449 1.19457 1.20224 1.19484 1.20067 1.04811 0.92907 1.00888 1.71930 1.01516 1.20043 1.27441 0.94240 0.89565 0.94014 0.92919 0.93147 0.92687 0.91573 0.92766 0.88455 0.89083 0.86505 0.87404 0.87223 0.87208 0.85461 0.91914 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.73 10.24 -35.23 -0.36 -5.09 16 3 C 0.07 0.71 5.32 37.15 0.20 0.91 16 4 C -0.09 -1.07 2.62 -90.62 -0.24 -1.31 16 5 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 6 C -0.14 -1.80 8.90 37.16 0.33 -1.47 16 7 C -0.02 -0.23 5.32 -27.88 -0.15 -0.38 16 8 C 0.17 2.53 6.68 -156.38 -1.05 1.48 16 9 N -0.39 -5.83 11.46 30.90 0.35 -5.47 16 10 O 0.07 1.10 11.31 18.10 0.20 1.30 16 11 C 0.20 2.94 7.75 -13.06 -0.10 2.83 16 12 C 0.02 0.24 5.97 -29.04 -0.17 0.07 16 13 C -0.06 -1.04 5.11 -104.65 -0.54 -1.57 16 14 C -0.20 -3.26 9.70 -39.53 -0.38 -3.64 16 15 C -0.07 -1.33 10.04 -39.61 -0.40 -1.73 16 16 C -0.23 -4.85 9.17 -39.40 -0.36 -5.22 16 17 C 0.15 3.61 6.65 -39.11 -0.26 3.35 16 18 O -0.17 -4.97 9.76 0.04 0.00 -4.97 16 19 C -0.39 -10.99 9.49 30.89 0.29 -10.70 16 20 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 21 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 22 N -0.86 -25.21 13.67 55.48 0.76 -24.45 16 23 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 27 C -0.17 -3.45 9.65 -39.39 -0.38 -3.83 16 28 N -0.48 -7.60 11.55 -9.87 -0.11 -7.72 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.79 6.84 -51.93 -0.36 0.44 16 35 H 0.07 0.86 7.82 -51.93 -0.41 0.46 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.12 1.32 8.08 -51.93 -0.42 0.90 16 40 H 0.11 0.98 8.08 -51.93 -0.42 0.56 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 44 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -32.87 385.15 -6.94 -39.81 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.38 Total: 4.08 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.18 Total: -18.77 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 1.00 Total: -37.65 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.16 Total: -8.75 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.87 -6.94 -39.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844885188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.449 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds