Wall clock time and date at job start Tue Mar 31 2020 18:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00150 * 2 1 4 4 C 1.52991 * 109.47282 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47562 * 304.99883 * 4 3 2 6 6 C 1.53003 * 109.47031 * 65.00169 * 4 3 2 7 7 C 1.53006 * 109.47361 * 184.99586 * 4 3 2 8 8 C 1.50694 * 109.47019 * 175.00188 * 7 4 3 9 9 N 1.29944 * 126.28847 * 89.98367 * 8 7 4 10 10 O 1.21300 * 110.25251 * 179.97438 * 9 8 7 11 11 C 1.33642 * 109.81034 * 359.97438 * 10 9 8 12 12 C 1.50700 * 126.55191 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47293 * 270.02751 * 12 11 10 14 14 C 1.38328 * 119.96972 * 89.99434 * 13 12 11 15 15 C 1.38275 * 120.13835 * 180.02562 * 14 13 12 16 16 C 1.38123 * 120.06977 * 0.28020 * 15 14 13 17 17 C 1.38853 * 119.93133 * 359.45069 * 16 15 14 18 18 O 1.35749 * 120.07112 * 180.27775 * 17 16 15 19 19 C 1.34833 * 116.99801 * 354.75701 * 18 17 16 20 20 H 1.07999 * 120.00283 * 5.08278 * 19 18 17 21 21 C 1.38658 * 119.99720 * 185.08053 * 19 18 17 22 22 N 1.31553 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99773 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46994 * 60.00056 * 23 21 19 25 25 H 1.48495 * 109.46935 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47146 * 300.00259 * 23 21 19 27 27 C 1.38080 * 119.96292 * 270.02113 * 13 12 11 28 28 N 1.31127 * 106.89760 * 0.22731 * 11 10 9 29 29 H 1.08997 * 109.46885 * 60.00276 * 1 2 3 30 30 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47140 * 300.00303 * 1 2 3 32 32 H 1.09003 * 109.47059 * 59.99519 * 3 2 1 33 33 H 1.08997 * 109.46854 * 300.00135 * 3 2 1 34 34 H 1.09003 * 109.47033 * 180.02562 * 6 4 3 35 35 H 1.08999 * 109.46932 * 299.99541 * 6 4 3 36 36 H 1.08996 * 109.47181 * 59.99481 * 6 4 3 37 37 H 1.09000 * 109.46352 * 55.00217 * 7 4 3 38 38 H 1.08999 * 109.47195 * 295.00495 * 7 4 3 39 39 H 1.09001 * 109.47395 * 150.02322 * 12 11 10 40 40 H 1.08998 * 109.47262 * 30.02419 * 12 11 10 41 41 H 1.08001 * 119.92799 * 0.02562 * 14 13 12 42 42 H 1.08000 * 119.96093 * 180.02562 * 15 14 13 43 43 H 1.07996 * 120.03245 * 179.70156 * 16 15 14 44 44 H 0.96999 * 119.99776 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.03814 * 359.95608 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9962 0.5364 -1.3064 7 6 4.1574 2.5769 0.1263 8 6 5.6537 2.4493 0.2504 9 7 6.5084 2.4373 -0.7284 10 8 7.6370 2.3221 -0.2990 11 6 7.6086 2.2480 1.0351 12 6 8.7960 2.0997 1.9512 13 6 9.0781 0.6363 2.1750 14 6 9.9390 -0.0388 1.3286 15 6 10.1999 -1.3816 1.5305 16 6 9.5967 -2.0544 2.5751 17 6 8.7363 -1.3782 3.4299 18 8 8.1464 -2.0354 4.4609 19 6 8.3511 -3.3659 4.5359 20 1 9.0268 -3.8482 3.8451 21 6 7.6942 -4.1151 5.5002 22 7 6.8708 -3.5278 6.3414 23 14 7.9773 -5.9587 5.6037 24 1 9.4154 -6.2249 5.8606 25 1 7.1634 -6.5230 6.7101 26 1 7.5776 -6.5935 4.3221 27 6 8.4764 -0.0293 3.2246 28 7 6.3498 2.3235 1.3943 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 5.0828 0.4499 -1.3058 35 1 3.5533 -0.4555 -1.3960 36 1 3.6809 1.1525 -2.1485 37 1 3.7603 3.0735 1.0116 38 1 3.9149 3.1644 -0.7593 39 1 8.5801 2.5784 2.9063 40 1 9.6668 2.5721 1.4967 41 1 10.4083 0.4840 0.5084 42 1 10.8728 -1.9059 0.8681 43 1 9.7971 -3.1044 2.7294 44 1 6.4110 -4.0520 7.0157 45 1 7.8045 0.4984 3.8853 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844885188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:36 Heat of formation + Delta-G solvation = -14.550308 kcal Electronic energy + Delta-G solvation = -27692.979883 eV Core-core repulsion = 23678.632589 eV Total energy + Delta-G solvation = -4014.347293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -46.59941 -40.82217 -39.38644 -38.55559 -37.54279 -36.02407 -34.65989 -34.22141 -32.31575 -30.86769 -29.14794 -28.46466 -28.25939 -27.25261 -26.48729 -24.67186 -23.49510 -22.99018 -22.19430 -21.32803 -19.63074 -19.15261 -18.82597 -18.31498 -17.48890 -17.01070 -16.75464 -16.49475 -16.34233 -16.13605 -16.11248 -15.51875 -15.21799 -15.19974 -14.88533 -14.55219 -14.42752 -14.13639 -13.83232 -13.61290 -13.55095 -13.19667 -12.98232 -12.94443 -12.79359 -12.59977 -12.46648 -12.43821 -12.24607 -12.16477 -12.11941 -12.02703 -11.92088 -11.78233 -11.25563 -10.86038 -10.80291 -10.63175 -9.74285 -9.02335 -8.47512 -6.16323 0.06371 0.46177 0.71991 1.19686 1.33609 1.44427 1.49991 1.86584 2.16867 2.53994 2.78876 2.92045 3.07171 3.17948 3.42230 3.72030 3.78611 3.87229 3.98930 4.09677 4.11083 4.29589 4.32773 4.37931 4.40965 4.44527 4.50452 4.54345 4.57923 4.60496 4.67711 4.73615 4.78112 4.82412 4.84043 4.89030 5.01837 5.04680 5.11034 5.13389 5.21032 5.27417 5.62273 5.68887 5.72079 6.01226 6.18847 6.22933 6.96841 7.15619 7.77787 8.75477 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008142 B = 0.003425 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3438.144783 B = 8173.657080 C =10778.527993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.072 3.928 4 C -0.085 4.085 5 H 0.050 0.950 6 C -0.137 4.137 7 C -0.019 4.019 8 C 0.168 3.832 9 N -0.396 5.396 10 O 0.076 5.924 11 C 0.201 3.799 12 C 0.023 3.977 13 C -0.051 4.051 14 C -0.174 4.174 15 C -0.074 4.074 16 C -0.240 4.240 17 C 0.109 3.891 18 O -0.233 6.233 19 C -0.416 4.416 20 H 0.101 0.899 21 C -0.022 4.022 22 N -0.920 5.920 23 Si 1.017 2.983 24 H -0.254 1.254 25 H -0.271 1.271 26 H -0.260 1.260 27 C -0.183 4.183 28 N -0.507 5.507 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.031 0.969 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.129 0.871 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.149 0.851 43 H 0.118 0.882 44 H 0.272 0.728 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.726 13.305 -15.409 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.005 4.005 4 C -0.105 4.105 5 H 0.068 0.932 6 C -0.194 4.194 7 C -0.057 4.057 8 C -0.105 4.105 9 N -0.105 5.105 10 O 0.019 5.981 11 C -0.019 4.019 12 C -0.015 4.015 13 C -0.052 4.052 14 C -0.192 4.192 15 C -0.091 4.091 16 C -0.260 4.260 17 C 0.059 3.941 18 O -0.140 6.140 19 C -0.492 4.492 20 H 0.119 0.881 21 C -0.220 4.220 22 N -0.558 5.558 23 Si 0.836 3.164 24 H -0.178 1.178 25 H -0.196 1.196 26 H -0.184 1.184 27 C -0.202 4.202 28 N -0.241 5.241 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.147 0.853 40 H 0.175 0.825 41 H 0.178 0.822 42 H 0.166 0.834 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.475 13.267 -15.616 20.974 hybrid contribution -0.156 -1.080 0.744 1.320 sum -4.631 12.187 -14.873 19.778 Atomic orbital electron populations 1.22914 0.79326 1.03603 1.01125 1.87871 1.21621 1.28954 1.95651 1.22536 0.91267 0.84627 1.02048 1.20997 0.94968 0.95590 0.98979 0.93159 1.21727 0.99645 1.01211 0.96843 1.20053 0.81667 0.97704 1.06288 1.26122 1.00931 1.00018 0.83399 1.74569 0.90472 1.21955 1.23508 1.85243 1.24692 1.65267 1.22919 1.29056 0.95840 0.93793 0.83224 1.19342 0.91481 0.93262 0.97414 1.19251 0.96977 0.94585 0.94386 1.21135 1.01987 0.94524 1.01537 1.21186 0.97564 0.94934 0.95462 1.21380 1.03399 1.01213 0.99976 1.19902 0.92822 0.93165 0.88257 1.83945 1.65557 1.22608 1.41853 1.21784 1.28204 0.80403 1.18809 0.88126 1.26582 0.94964 1.05800 0.94620 1.70181 1.28108 1.38760 1.18738 0.84677 0.79360 0.73565 0.78810 1.17840 1.19566 1.18433 1.20282 1.05488 0.92039 1.02394 1.71953 1.02624 1.20922 1.28587 0.92357 0.89279 0.93183 0.91758 0.90520 0.94987 0.92753 0.90550 0.87120 0.86387 0.85299 0.82458 0.82229 0.83380 0.86438 0.91860 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -10.16 10.24 -148.98 -1.53 -11.69 16 3 C 0.07 1.36 5.32 71.98 0.38 1.75 16 4 C -0.09 -2.04 2.62 -10.79 -0.03 -2.07 16 5 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 6 C -0.14 -3.38 8.90 71.98 0.64 -2.74 16 7 C -0.02 -0.38 5.32 29.85 0.16 -0.23 16 8 C 0.17 4.69 6.68 138.46 0.93 5.61 16 9 N -0.40 -11.21 11.46 -60.33 -0.69 -11.90 16 10 O 0.08 2.04 11.31 74.84 0.85 2.89 16 11 C 0.20 5.40 7.75 88.38 0.68 6.09 16 12 C 0.02 0.50 5.97 29.10 0.17 0.67 16 13 C -0.05 -1.57 5.11 -19.88 -0.10 -1.68 16 14 C -0.17 -4.89 9.70 22.30 0.22 -4.68 16 15 C -0.07 -2.41 10.04 22.25 0.22 -2.18 16 16 C -0.24 -10.40 9.17 22.39 0.21 -10.20 16 17 C 0.11 5.45 6.65 22.58 0.15 5.60 16 18 O -0.23 -14.28 9.76 -22.76 -0.22 -14.50 16 19 C -0.42 -24.65 9.49 67.92 0.64 -24.01 16 20 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 21 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 22 N -0.92 -57.47 13.67 21.61 0.30 -57.17 16 23 Si 1.02 43.54 29.55 68.60 2.03 45.56 16 24 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 26 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 27 C -0.18 -7.72 9.65 22.39 0.22 -7.50 16 28 N -0.51 -15.79 11.55 -303.21 -3.50 -19.29 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.03 0.91 6.84 -2.39 -0.02 0.90 16 35 H 0.05 1.44 7.82 -2.39 -0.02 1.42 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.12 1.80 8.14 -2.39 -0.02 1.79 16 39 H 0.13 2.56 8.08 -2.39 -0.02 2.54 16 40 H 0.16 1.91 8.08 -2.39 -0.02 1.89 16 41 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 42 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 43 H 0.12 5.20 5.64 -2.91 -0.02 5.19 16 44 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 45 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -79.67 385.15 4.43 -75.23 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 1.00 Total: 25.56 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 6.21 Total: -34.69 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -3.90 Total: -88.36 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.90 Total: -23.30 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -79.67 4.43 -75.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844885188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.682 kcal (2) G-P(sol) polarization free energy of solvation -79.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds