Wall clock time and date at job start Tue Mar 31 2020 18:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47418 * 2 1 4 4 C 1.52998 * 109.47208 * 239.99425 * 2 1 3 5 5 C 1.50702 * 109.46880 * 174.68862 * 4 2 1 6 6 O 1.20825 * 119.99836 * 354.40696 * 5 4 2 7 7 O 1.34228 * 119.99603 * 174.42083 * 5 4 2 8 8 C 1.45205 * 116.99661 * 185.08028 * 7 5 4 9 9 C 1.50697 * 109.47118 * 184.81652 * 8 7 5 10 10 O 1.21293 * 120.00194 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00078 * 180.02562 * 9 8 7 12 12 C 1.37092 * 120.00132 * 179.97438 * 11 9 8 13 13 H 1.08004 * 119.99995 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00475 * 179.97438 * 12 11 9 15 15 N 1.31420 * 119.99384 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00576 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47022 * 59.99766 * 16 14 12 18 18 H 1.48496 * 109.47118 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46686 * 300.00140 * 16 14 12 20 20 N 1.46903 * 109.46542 * 119.99832 * 2 1 3 21 21 C 1.47908 * 111.00307 * 51.00120 * 20 2 1 22 22 C 1.54607 * 102.62110 * 265.48756 * 21 20 2 23 23 C 1.51572 * 102.83582 * 334.46247 * 22 21 20 24 24 C 1.37917 * 131.56043 * 196.34438 * 23 22 21 25 25 C 1.38305 * 120.08076 * 179.28841 * 24 23 22 26 26 C 1.38302 * 119.88300 * 359.97438 * 25 24 23 27 27 C 1.37915 * 120.26406 * 0.12578 * 26 25 24 28 28 C 1.38964 * 107.95518 * 15.93990 * 23 22 21 29 29 H 1.08993 * 109.47230 * 173.94276 * 1 2 3 30 30 H 1.09000 * 109.47038 * 293.95195 * 1 2 3 31 31 H 1.09006 * 109.46351 * 53.94608 * 1 2 3 32 32 H 1.09001 * 109.47196 * 294.68399 * 4 2 1 33 33 H 1.08994 * 109.46679 * 54.68519 * 4 2 1 34 34 H 1.09006 * 109.46849 * 304.81607 * 8 7 5 35 35 H 1.08992 * 109.47102 * 64.81091 * 8 7 5 36 36 H 0.96998 * 119.99754 * 359.97438 * 11 9 8 37 37 H 0.96997 * 119.99610 * 179.97438 * 15 14 12 38 38 H 1.08997 * 110.78028 * 23.76834 * 21 20 2 39 39 H 1.09002 * 110.77739 * 147.20544 * 21 20 2 40 40 H 1.08999 * 110.73493 * 216.12948 * 22 21 20 41 41 H 1.08992 * 110.89630 * 92.88077 * 22 21 20 42 42 H 1.08001 * 119.96436 * 359.28620 * 24 23 22 43 43 H 1.07997 * 120.06215 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.86850 * 180.14505 * 26 25 24 45 45 H 1.08004 * 119.89926 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5413 -0.6084 -1.3166 6 8 4.1327 0.0716 -0.5118 7 8 4.2213 -1.2631 -2.2709 8 6 5.6707 -1.2009 -2.2080 9 6 6.2558 -1.8873 -3.4152 10 8 5.5235 -2.3808 -4.2467 11 7 7.5929 -1.9537 -3.5706 12 6 8.1253 -2.5786 -4.6686 13 1 7.4731 -3.0180 -5.4089 14 6 9.5038 -2.6466 -4.8290 15 7 10.2973 -2.1115 -3.9284 16 14 10.2292 -3.4987 -6.3248 17 1 9.7576 -2.8198 -7.5584 18 1 11.7114 -3.4354 -6.2602 19 1 9.7952 -4.9187 -6.3445 20 7 2.0196 -0.6925 1.1995 21 6 1.3769 -2.0165 1.3466 22 6 0.1903 -1.7131 2.2901 23 6 0.6657 -0.4885 3.0461 24 6 0.2201 0.0968 4.2127 25 6 0.8500 1.2244 4.7072 26 6 1.9282 1.7642 4.0298 27 6 2.3765 1.1840 2.8617 28 6 1.7445 0.0497 2.3548 29 1 -0.3633 -1.0218 -0.1084 30 1 -0.3633 0.4172 0.9392 31 1 -0.3632 0.6049 -0.8309 32 1 1.7566 -1.7728 -1.2027 33 1 1.6011 -0.2655 -2.1365 34 1 5.9893 -0.1586 -2.1926 35 1 6.0167 -1.7000 -1.3029 36 1 8.1786 -1.5594 -2.9055 37 1 11.2596 -2.1593 -4.0402 38 1 1.0214 -2.3830 0.3836 39 1 2.0621 -2.7302 1.8042 40 1 0.0175 -2.5451 2.9727 41 1 -0.7117 -1.4893 1.7207 42 1 -0.6218 -0.3260 4.7409 43 1 0.5005 1.6827 5.6205 44 1 2.4214 2.6434 4.4174 45 1 3.2193 1.6103 2.3378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848870686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:27 Heat of formation + Delta-G solvation = -74.639823 kcal Electronic energy + Delta-G solvation = -27907.542441 eV Core-core repulsion = 23890.589471 eV Total energy + Delta-G solvation = -4016.952970 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.50273 -40.05440 -38.14647 -37.48531 -35.92272 -33.96159 -33.78826 -31.82498 -31.34480 -29.24369 -29.17747 -28.79406 -27.62793 -24.57544 -23.38223 -22.84980 -21.46571 -21.16319 -19.64726 -19.50307 -18.02353 -17.64165 -17.40293 -16.33435 -16.24982 -16.06587 -15.71777 -15.56897 -15.41352 -14.55307 -14.29047 -14.19275 -13.86238 -13.67374 -13.61596 -13.38190 -12.91343 -12.83506 -12.61213 -12.56727 -12.50566 -12.28090 -11.97702 -11.82921 -11.59634 -11.56757 -11.32716 -11.13222 -11.08834 -11.00238 -10.47205 -10.29674 -10.27830 -10.15261 -9.65429 -9.56650 -8.99605 -8.47455 -8.05575 -8.05134 -6.47038 -3.89035 1.09927 1.19402 2.50857 2.84195 3.17369 3.24229 3.29192 3.34938 3.56072 3.78227 4.13871 4.24215 4.47698 4.48425 4.59487 4.69585 4.81325 4.84980 4.89417 4.98633 5.11095 5.16346 5.17663 5.18900 5.22395 5.31445 5.35721 5.43392 5.47952 5.54548 5.63620 5.67244 5.71098 5.77771 5.84524 5.90194 6.11393 6.17448 6.26750 6.31904 6.53689 6.75388 6.80664 7.10015 7.50150 7.94291 8.09917 8.52399 9.10033 9.43031 9.93369 10.70213 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.002105 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.658075 B =13296.021093 C =13820.649403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.096 3.904 3 H 0.098 0.902 4 C -0.108 4.108 5 C 0.460 3.540 6 O -0.497 6.497 7 O -0.332 6.332 8 C 0.063 3.937 9 C 0.439 3.561 10 O -0.578 6.578 11 N -0.554 5.554 12 C -0.302 4.302 13 H 0.105 0.895 14 C 0.024 3.976 15 N -0.898 5.898 16 Si 0.935 3.065 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.272 1.272 20 N -0.478 5.478 21 C 0.042 3.958 22 C -0.113 4.113 23 C -0.141 4.141 24 C -0.093 4.093 25 C -0.136 4.136 26 C -0.106 4.106 27 C -0.107 4.107 28 C 0.102 3.898 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.395 0.605 37 H 0.274 0.726 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.109 5.811 16.034 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.011 4.011 3 H 0.116 0.884 4 C -0.146 4.146 5 C 0.301 3.699 6 O -0.384 6.384 7 O -0.247 6.247 8 C -0.015 4.015 9 C 0.224 3.776 10 O -0.462 6.462 11 N -0.191 5.191 12 C -0.431 4.431 13 H 0.123 0.877 14 C -0.178 4.178 15 N -0.538 5.538 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 N -0.194 5.194 21 C -0.085 4.085 22 C -0.151 4.151 23 C -0.144 4.144 24 C -0.112 4.112 25 C -0.155 4.155 26 C -0.124 4.124 27 C -0.127 4.127 28 C 0.006 3.994 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.228 0.772 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.594 5.611 15.557 26.412 hybrid contribution 0.255 -0.043 -0.025 0.260 sum -20.339 5.567 15.532 26.190 Atomic orbital electron populations 1.22675 0.95820 1.02841 1.03179 1.21641 0.92915 0.98910 0.87586 0.88424 1.21507 0.89090 1.04337 0.99625 1.23398 0.91254 0.76964 0.78244 1.90648 1.70715 1.37944 1.39099 1.86537 1.20944 1.67712 1.49512 1.22671 0.77017 1.02193 0.99591 1.19381 0.83552 0.86571 0.88122 1.90551 1.59311 1.51214 1.45090 1.41706 1.03996 1.50331 1.23082 1.19671 0.90590 1.32400 1.00487 0.87709 1.25314 0.95936 0.97588 0.98978 1.69613 1.04798 1.44486 1.34947 0.85856 0.77447 0.79709 0.80858 1.19777 1.20892 1.19776 1.60227 1.55918 1.02416 1.00888 1.23259 0.94175 0.91117 0.99936 1.21872 0.99356 0.95723 0.98120 1.21010 0.96679 0.98997 0.97678 1.20362 0.99934 0.95978 0.94915 1.21027 0.97263 0.96735 1.00431 1.20950 0.96815 0.99816 0.94856 1.20631 1.00175 0.95416 0.96488 1.19456 0.93317 0.94357 0.92246 0.91584 0.91448 0.91388 0.87617 0.86851 0.89677 0.89727 0.77162 0.91609 0.89319 0.89161 0.89949 0.89618 0.86459 0.85992 0.85714 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 7.45 37.16 0.28 -1.10 16 2 C 0.10 0.96 1.83 -67.71 -0.12 0.84 16 3 H 0.10 1.11 7.79 -51.93 -0.40 0.71 16 4 C -0.11 -1.15 5.25 -27.88 -0.15 -1.29 16 5 C 0.46 7.18 7.77 36.01 0.28 7.46 16 6 O -0.50 -8.70 15.12 -18.75 -0.28 -8.98 16 7 O -0.33 -6.26 9.76 -45.90 -0.45 -6.71 16 8 C 0.06 1.23 6.04 36.00 0.22 1.45 16 9 C 0.44 10.79 7.86 -10.99 -0.09 10.70 16 10 O -0.58 -16.28 16.08 -14.11 -0.23 -16.50 16 11 N -0.55 -14.25 5.29 -10.96 -0.06 -14.31 16 12 C -0.30 -8.44 9.68 -14.94 -0.14 -8.58 16 13 H 0.11 3.04 7.16 -52.48 -0.38 2.66 16 14 C 0.02 0.65 5.50 -17.46 -0.10 0.55 16 15 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 16 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 N -0.48 -5.43 4.35 -161.49 -0.70 -6.14 16 21 C 0.04 0.38 6.25 -2.42 -0.02 0.36 16 22 C -0.11 -0.87 6.10 -26.61 -0.16 -1.03 16 23 C -0.14 -1.36 5.28 -104.04 -0.55 -1.91 16 24 C -0.09 -0.81 10.03 -39.67 -0.40 -1.21 16 25 C -0.14 -1.14 10.06 -39.53 -0.40 -1.53 16 26 C -0.11 -0.97 10.02 -39.68 -0.40 -1.37 16 27 C -0.11 -1.20 10.07 -39.27 -0.40 -1.59 16 28 C 0.10 1.16 5.01 -83.40 -0.42 0.74 16 29 H 0.07 0.41 5.81 -51.93 -0.30 0.11 16 30 H 0.07 0.55 6.05 -51.93 -0.31 0.24 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.11 0.98 6.42 -51.93 -0.33 0.65 16 33 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.55 7.97 -51.93 -0.41 1.14 16 35 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 36 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.09 0.66 5.32 -51.93 -0.28 0.38 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.56 6.01 -51.93 -0.31 0.25 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -33.80 370.40 -8.99 -42.79 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.99 Total: 9.56 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -2.56 Total: 2.48 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.04 Total: -44.09 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.96 Total: -32.19 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.80 -8.99 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848870686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.851 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds