Wall clock time and date at job start Tue Mar 31 2020 18:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47418 * 2 1 4 4 C 1.52998 * 109.47208 * 239.99425 * 2 1 3 5 5 C 1.50702 * 109.46880 * 174.68862 * 4 2 1 6 6 O 1.20825 * 119.99836 * 354.40696 * 5 4 2 7 7 O 1.34228 * 119.99603 * 174.42083 * 5 4 2 8 8 C 1.45205 * 116.99661 * 185.08028 * 7 5 4 9 9 C 1.50697 * 109.47118 * 184.81652 * 8 7 5 10 10 O 1.21293 * 120.00194 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00078 * 180.02562 * 9 8 7 12 12 C 1.37092 * 120.00132 * 179.97438 * 11 9 8 13 13 H 1.08004 * 119.99995 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00475 * 179.97438 * 12 11 9 15 15 N 1.31420 * 119.99384 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00576 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47022 * 59.99766 * 16 14 12 18 18 H 1.48496 * 109.47118 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46686 * 300.00140 * 16 14 12 20 20 N 1.46903 * 109.46542 * 119.99832 * 2 1 3 21 21 C 1.47908 * 111.00307 * 51.00120 * 20 2 1 22 22 C 1.54607 * 102.62110 * 265.48756 * 21 20 2 23 23 C 1.51572 * 102.83582 * 334.46247 * 22 21 20 24 24 C 1.37917 * 131.56043 * 196.34438 * 23 22 21 25 25 C 1.38305 * 120.08076 * 179.28841 * 24 23 22 26 26 C 1.38302 * 119.88300 * 359.97438 * 25 24 23 27 27 C 1.37915 * 120.26406 * 0.12578 * 26 25 24 28 28 C 1.38964 * 107.95518 * 15.93990 * 23 22 21 29 29 H 1.08993 * 109.47230 * 173.94276 * 1 2 3 30 30 H 1.09000 * 109.47038 * 293.95195 * 1 2 3 31 31 H 1.09006 * 109.46351 * 53.94608 * 1 2 3 32 32 H 1.09001 * 109.47196 * 294.68399 * 4 2 1 33 33 H 1.08994 * 109.46679 * 54.68519 * 4 2 1 34 34 H 1.09006 * 109.46849 * 304.81607 * 8 7 5 35 35 H 1.08992 * 109.47102 * 64.81091 * 8 7 5 36 36 H 0.96998 * 119.99754 * 359.97438 * 11 9 8 37 37 H 0.96997 * 119.99610 * 179.97438 * 15 14 12 38 38 H 1.08997 * 110.78028 * 23.76834 * 21 20 2 39 39 H 1.09002 * 110.77739 * 147.20544 * 21 20 2 40 40 H 1.08999 * 110.73493 * 216.12948 * 22 21 20 41 41 H 1.08992 * 110.89630 * 92.88077 * 22 21 20 42 42 H 1.08001 * 119.96436 * 359.28620 * 24 23 22 43 43 H 1.07997 * 120.06215 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.86850 * 180.14505 * 26 25 24 45 45 H 1.08004 * 119.89926 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5413 -0.6084 -1.3166 6 8 4.1327 0.0716 -0.5118 7 8 4.2213 -1.2631 -2.2709 8 6 5.6707 -1.2009 -2.2080 9 6 6.2558 -1.8873 -3.4152 10 8 5.5235 -2.3808 -4.2467 11 7 7.5929 -1.9537 -3.5706 12 6 8.1253 -2.5786 -4.6686 13 1 7.4731 -3.0180 -5.4089 14 6 9.5038 -2.6466 -4.8290 15 7 10.2973 -2.1115 -3.9284 16 14 10.2292 -3.4987 -6.3248 17 1 9.7576 -2.8198 -7.5584 18 1 11.7114 -3.4354 -6.2602 19 1 9.7952 -4.9187 -6.3445 20 7 2.0196 -0.6925 1.1995 21 6 1.3769 -2.0165 1.3466 22 6 0.1903 -1.7131 2.2901 23 6 0.6657 -0.4885 3.0461 24 6 0.2201 0.0968 4.2127 25 6 0.8500 1.2244 4.7072 26 6 1.9282 1.7642 4.0298 27 6 2.3765 1.1840 2.8617 28 6 1.7445 0.0497 2.3548 29 1 -0.3633 -1.0218 -0.1084 30 1 -0.3633 0.4172 0.9392 31 1 -0.3632 0.6049 -0.8309 32 1 1.7566 -1.7728 -1.2027 33 1 1.6011 -0.2655 -2.1365 34 1 5.9893 -0.1586 -2.1926 35 1 6.0167 -1.7000 -1.3029 36 1 8.1786 -1.5594 -2.9055 37 1 11.2596 -2.1593 -4.0402 38 1 1.0214 -2.3830 0.3836 39 1 2.0621 -2.7302 1.8042 40 1 0.0175 -2.5451 2.9727 41 1 -0.7117 -1.4893 1.7207 42 1 -0.6218 -0.3260 4.7409 43 1 0.5005 1.6827 5.6205 44 1 2.4214 2.6434 4.4174 45 1 3.2193 1.6103 2.3378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848870686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:26 Heat of formation + Delta-G solvation = -95.070387 kcal Electronic energy + Delta-G solvation = -27908.428377 eV Core-core repulsion = 23890.589471 eV Total energy + Delta-G solvation = -4017.838906 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.27273 -41.36861 -40.01642 -38.31534 -37.31390 -36.03136 -34.56320 -33.42261 -32.53758 -30.52266 -29.88276 -29.47199 -28.89010 -26.52816 -24.04667 -23.69526 -22.35117 -22.05920 -21.41195 -20.50613 -20.06995 -18.76702 -18.38426 -17.85143 -17.56812 -17.18931 -16.79585 -16.45365 -16.38154 -16.28745 -15.77840 -15.72914 -15.00790 -14.61118 -14.59084 -14.30024 -14.01453 -13.94454 -13.59131 -13.54109 -13.47565 -13.21415 -13.18295 -13.01750 -12.94938 -12.89103 -12.49431 -12.25110 -12.13090 -11.99052 -11.85001 -11.78249 -11.68275 -11.57289 -11.46635 -10.51338 -10.36263 -10.12862 -9.69484 -8.77399 -8.52717 -6.03766 0.40309 0.47571 1.26401 1.37497 1.40292 1.49024 1.58948 1.86641 2.30052 2.64667 2.85599 3.07351 3.12583 3.52218 3.69702 3.78010 3.85880 4.00365 4.04156 4.13677 4.16003 4.18895 4.21876 4.26592 4.33663 4.47738 4.51298 4.53184 4.61364 4.70394 4.74692 4.83987 4.90792 5.02356 5.05251 5.20242 5.25679 5.35568 5.46564 5.50230 5.57039 5.62686 5.87052 5.88516 6.05158 6.36442 6.45828 6.79968 7.01977 7.39032 7.92353 8.64177 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.002105 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.658075 B =13296.021093 C =13820.649403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.099 3.901 3 H 0.075 0.925 4 C -0.101 4.101 5 C 0.457 3.543 6 O -0.520 6.520 7 O -0.350 6.350 8 C 0.075 3.925 9 C 0.437 3.563 10 O -0.617 6.617 11 N -0.559 5.559 12 C -0.339 4.339 13 H 0.085 0.915 14 C -0.011 4.011 15 N -0.917 5.917 16 Si 1.000 3.000 17 H -0.269 1.269 18 H -0.270 1.270 19 H -0.269 1.269 20 N -0.504 5.504 21 C 0.037 3.963 22 C -0.104 4.104 23 C -0.147 4.147 24 C -0.097 4.097 25 C -0.136 4.136 26 C -0.111 4.111 27 C -0.134 4.134 28 C 0.081 3.919 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.399 0.601 37 H 0.281 0.719 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.141 0.859 43 H 0.148 0.852 44 H 0.140 0.860 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.735 5.412 16.638 28.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.007 4.007 3 H 0.093 0.907 4 C -0.138 4.138 5 C 0.301 3.699 6 O -0.408 6.408 7 O -0.266 6.266 8 C -0.003 4.003 9 C 0.224 3.776 10 O -0.504 6.504 11 N -0.196 5.196 12 C -0.468 4.468 13 H 0.103 0.897 14 C -0.211 4.211 15 N -0.556 5.556 16 Si 0.823 3.177 17 H -0.194 1.194 18 H -0.194 1.194 19 H -0.194 1.194 20 N -0.221 5.221 21 C -0.089 4.089 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.115 4.115 25 C -0.154 4.154 26 C -0.129 4.129 27 C -0.154 4.154 28 C -0.015 4.015 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.143 0.857 33 H 0.157 0.843 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.233 0.767 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.159 0.841 43 H 0.166 0.834 44 H 0.158 0.842 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.220 5.231 16.194 27.988 hybrid contribution 0.762 0.137 -0.131 0.785 sum -21.458 5.368 16.063 27.336 Atomic orbital electron populations 1.22581 0.93349 1.04155 1.03385 1.21589 0.94675 0.97470 0.86956 0.90660 1.21726 0.85070 1.05947 1.01075 1.24409 0.92863 0.75737 0.76917 1.90644 1.71500 1.38867 1.39758 1.86555 1.20146 1.68719 1.51149 1.22390 0.78166 1.02334 0.97389 1.20130 0.82966 0.85660 0.88883 1.90512 1.60105 1.52858 1.46944 1.41760 1.04674 1.50343 1.22848 1.19702 0.91277 1.34376 1.01434 0.89672 1.26174 0.95640 0.97591 1.01719 1.69679 1.05330 1.44496 1.36137 0.84889 0.77140 0.78546 0.77174 1.19415 1.19399 1.19386 1.60192 1.57179 1.03395 1.01309 1.23334 0.94479 0.89954 1.01157 1.21859 0.99146 0.95211 0.97921 1.21288 0.96208 0.99536 0.97957 1.20718 1.00389 0.95855 0.94582 1.21369 0.96516 0.96547 1.01007 1.21174 0.97254 1.00264 0.94250 1.20695 1.00482 0.96506 0.97713 1.19625 0.94334 0.94758 0.92817 0.89851 0.92081 0.90094 0.85699 0.84323 0.88308 0.88091 0.76666 0.90959 0.87634 0.90368 0.88704 0.87966 0.84111 0.83421 0.84209 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 7.45 71.98 0.54 -1.68 16 2 C 0.10 1.91 1.83 44.92 0.08 2.00 16 3 H 0.08 1.76 7.79 -2.39 -0.02 1.75 16 4 C -0.10 -2.00 5.25 29.85 0.16 -1.84 16 5 C 0.46 14.16 7.77 71.24 0.55 14.72 16 6 O -0.52 -18.49 15.12 21.97 0.33 -18.16 16 7 O -0.35 -13.16 9.76 -45.05 -0.44 -13.60 16 8 C 0.07 2.95 6.04 71.23 0.43 3.38 16 9 C 0.44 21.94 7.86 87.66 0.69 22.63 16 10 O -0.62 -35.67 16.08 15.73 0.25 -35.42 16 11 N -0.56 -29.41 5.29 -306.99 -1.62 -31.03 16 12 C -0.34 -19.31 9.68 84.04 0.81 -18.49 16 13 H 0.09 5.10 7.16 -2.91 -0.02 5.08 16 14 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 15 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 16 Si 1.00 42.43 29.55 68.60 2.03 44.45 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 18 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 20 N -0.50 -11.31 4.35 -664.82 -2.89 -14.20 16 21 C 0.04 0.62 6.25 86.66 0.54 1.16 16 22 C -0.10 -1.36 6.10 30.67 0.19 -1.17 16 23 C -0.15 -2.64 5.28 -19.49 -0.10 -2.74 16 24 C -0.10 -1.48 10.03 22.21 0.22 -1.26 16 25 C -0.14 -2.04 10.06 22.30 0.22 -1.81 16 26 C -0.11 -2.01 10.02 22.21 0.22 -1.79 16 27 C -0.13 -3.14 10.07 22.47 0.23 -2.91 16 28 C 0.08 1.83 5.01 38.28 0.19 2.03 16 29 H 0.08 0.76 5.81 -2.39 -0.01 0.74 16 30 H 0.06 0.88 6.05 -2.39 -0.01 0.86 16 31 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.13 2.03 6.42 -2.39 -0.02 2.02 16 33 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.10 3.62 7.97 -2.38 -0.02 3.60 16 35 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 36 H 0.40 19.91 7.90 -92.71 -0.73 19.18 16 37 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 38 H 0.11 1.32 5.32 -2.39 -0.01 1.31 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 1.01 6.01 -2.39 -0.01 0.99 16 42 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 44 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 45 H 0.11 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -74.51 370.40 3.68 -70.83 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.30 Total: 34.21 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 5.44 Total: 12.11 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -4.23 Total: -94.42 kcal Atomic # 8 Polarization: -67.33 SS G_CDS: 0.15 Total: -67.18 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -74.51 3.68 -70.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848870686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.238 kcal (2) G-P(sol) polarization free energy of solvation -74.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds