Wall clock time and date at job start Tue Mar 31 2020 18:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46331 * 2 1 4 4 C 1.52999 * 109.46956 * 119.99701 * 2 1 3 5 5 C 1.50697 * 109.46953 * 185.31660 * 4 2 1 6 6 O 1.20823 * 120.00230 * 5.81884 * 5 4 2 7 7 O 1.34225 * 120.00041 * 185.81728 * 5 4 2 8 8 C 1.45203 * 117.00174 * 185.17492 * 7 5 4 9 9 C 1.50707 * 109.47281 * 175.12874 * 8 7 5 10 10 O 1.21294 * 119.99673 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99739 * 179.97438 * 9 8 7 12 12 C 1.37105 * 119.99819 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99365 * 0.02562 * 12 11 9 14 14 C 1.38948 * 120.00145 * 180.02562 * 12 11 9 15 15 N 1.31411 * 119.99808 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99935 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46994 * 90.00258 * 16 14 12 18 18 H 1.48503 * 109.46894 * 210.00263 * 16 14 12 19 19 H 1.48496 * 109.46900 * 330.00385 * 16 14 12 20 20 N 1.46891 * 109.47017 * 240.00194 * 2 1 3 21 21 C 1.47901 * 111.00123 * 309.30499 * 20 2 1 22 22 C 1.54607 * 102.62529 * 94.66773 * 21 20 2 23 23 C 1.51580 * 102.81794 * 25.60665 * 22 21 20 24 24 C 1.37909 * 131.57329 * 163.76890 * 23 22 21 25 25 C 1.38303 * 120.08336 * 180.32458 * 24 23 22 26 26 C 1.38309 * 119.88180 * 359.97438 * 25 24 23 27 27 C 1.37908 * 120.26178 * 359.86842 * 26 25 24 28 28 C 1.38964 * 107.94035 * 343.81286 * 23 22 21 29 29 H 1.08998 * 109.47592 * 305.88712 * 1 2 3 30 30 H 1.08998 * 109.47179 * 65.88925 * 1 2 3 31 31 H 1.09005 * 109.46864 * 185.88933 * 1 2 3 32 32 H 1.09003 * 109.46980 * 65.31776 * 4 2 1 33 33 H 1.08998 * 109.47456 * 305.31634 * 4 2 1 34 34 H 1.09003 * 109.46876 * 295.12461 * 8 7 5 35 35 H 1.08994 * 109.47025 * 55.12891 * 8 7 5 36 36 H 0.96998 * 120.00536 * 0.02562 * 11 9 8 37 37 H 0.97004 * 119.99438 * 179.97438 * 15 14 12 38 38 H 1.08999 * 110.78632 * 212.94706 * 21 20 2 39 39 H 1.08996 * 110.78105 * 336.38573 * 21 20 2 40 40 H 1.09000 * 110.74861 * 143.93951 * 22 21 20 41 41 H 1.09010 * 110.74260 * 267.27950 * 22 21 20 42 42 H 1.08003 * 119.96249 * 0.29941 * 24 23 22 43 43 H 1.08003 * 120.06094 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.87095 * 179.89005 * 26 25 24 45 45 H 1.07999 * 119.89781 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5412 -0.6082 1.3169 6 8 4.1324 0.0750 0.5146 7 8 4.2216 -1.2665 2.2684 8 6 5.6507 -1.0213 2.3460 9 6 6.2209 -1.7467 3.5376 10 8 5.4941 -2.4052 4.2514 11 7 7.5382 -1.6638 3.8100 12 6 8.0568 -2.3233 4.8943 13 1 7.4097 -2.9096 5.5299 14 6 9.4148 -2.2374 5.1755 15 7 9.9119 -2.8700 6.2145 16 14 10.5341 -1.2239 4.0756 17 1 10.5944 0.1709 4.5817 18 1 11.8978 -1.8118 4.0810 19 1 9.9998 -1.2252 2.6901 20 7 2.0197 -0.6924 -1.1994 21 6 1.3717 -2.0133 -1.3505 22 6 0.1912 -1.7040 -2.2997 23 6 0.6771 -0.4821 -3.0537 24 6 0.2394 0.1066 -4.2215 25 6 0.8734 1.2350 -4.7089 26 6 1.9472 1.7727 -4.0228 27 6 2.3867 1.1896 -2.8528 28 6 1.7518 0.0532 -2.3540 29 1 -0.3634 0.6024 0.8325 30 1 -0.3633 0.4198 -0.9380 31 1 -0.3633 -1.0223 0.1055 32 1 1.7565 -1.7727 1.2030 33 1 1.6010 -0.2653 2.1367 34 1 6.1312 -1.3825 1.4367 35 1 5.8306 0.0485 2.4517 36 1 8.1193 -1.1369 3.2393 37 1 10.8601 -2.8103 6.4106 38 1 2.0557 -2.7300 -1.8051 39 1 1.0097 -2.3787 -0.3895 40 1 0.0170 -2.5353 -2.9829 41 1 -0.7106 -1.4740 -1.7320 42 1 -0.5992 -0.3143 -4.7563 43 1 0.5306 1.6955 -5.6237 44 1 2.4432 2.6528 -4.4045 45 1 3.2255 1.6146 -2.3216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848870687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:31 Heat of formation + Delta-G solvation = -67.461895 kcal Electronic energy + Delta-G solvation = -27957.290933 eV Core-core repulsion = 23940.649221 eV Total energy + Delta-G solvation = -4016.641712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.54348 -40.15509 -38.33328 -37.54859 -36.02770 -34.02717 -33.83838 -31.86947 -31.76549 -29.35875 -29.23096 -28.83270 -27.79739 -24.46042 -23.41769 -22.87832 -21.50396 -21.20518 -19.71407 -19.57584 -18.53739 -17.69257 -17.48745 -16.40112 -16.32594 -16.09138 -15.76102 -15.60853 -15.47043 -14.87718 -14.41974 -14.19887 -13.77086 -13.72024 -13.57091 -13.30116 -12.95532 -12.86366 -12.69772 -12.61045 -12.58536 -12.37976 -12.17959 -12.05537 -12.00457 -11.61610 -11.36658 -11.23752 -11.17569 -11.03941 -10.62746 -10.41448 -10.26431 -10.02583 -9.69938 -9.64890 -9.03435 -8.62450 -8.26664 -8.09202 -6.37043 -3.89706 1.06270 1.15675 2.42935 2.72990 3.01156 3.05491 3.13891 3.30937 3.52375 3.59671 4.05970 4.20177 4.38665 4.43653 4.47548 4.63051 4.74516 4.77857 4.81705 4.93490 5.06489 5.11271 5.12377 5.14847 5.16063 5.27310 5.30028 5.39379 5.42042 5.48845 5.52317 5.61663 5.63864 5.65548 5.72856 5.80450 5.86407 6.13676 6.22735 6.28209 6.49714 6.67961 6.71982 7.05961 7.48012 7.97724 8.04821 8.50940 8.86307 9.32741 9.69187 10.75316 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.002257 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.158293 B =12403.297901 C =13159.452903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.096 3.904 3 H 0.097 0.903 4 C -0.108 4.108 5 C 0.461 3.539 6 O -0.497 6.497 7 O -0.330 6.330 8 C 0.060 3.940 9 C 0.448 3.552 10 O -0.558 6.558 11 N -0.581 5.581 12 C -0.307 4.307 13 H 0.122 0.878 14 C 0.044 3.956 15 N -0.876 5.876 16 Si 0.879 3.121 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.268 1.268 20 N -0.479 5.479 21 C 0.042 3.958 22 C -0.113 4.113 23 C -0.141 4.141 24 C -0.093 4.093 25 C -0.136 4.136 26 C -0.106 4.106 27 C -0.108 4.108 28 C 0.102 3.898 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.373 0.627 37 H 0.275 0.725 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.659 8.517 -20.876 30.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.011 4.011 3 H 0.116 0.884 4 C -0.146 4.146 5 C 0.303 3.697 6 O -0.384 6.384 7 O -0.246 6.246 8 C -0.017 4.017 9 C 0.233 3.767 10 O -0.440 6.440 11 N -0.221 5.221 12 C -0.436 4.436 13 H 0.140 0.860 14 C -0.159 4.159 15 N -0.515 5.515 16 Si 0.705 3.295 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.193 1.193 20 N -0.195 5.195 21 C -0.085 4.085 22 C -0.151 4.151 23 C -0.143 4.143 24 C -0.112 4.112 25 C -0.155 4.155 26 C -0.124 4.124 27 C -0.128 4.128 28 C 0.006 3.994 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.206 0.794 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.177 8.105 -20.335 29.770 hybrid contribution 0.522 0.855 -0.993 1.410 sum -19.655 8.959 -21.328 30.356 Atomic orbital electron populations 1.22676 0.95767 1.02890 1.03202 1.21644 0.92969 0.98865 0.87587 0.88446 1.21517 0.88903 1.04476 0.99687 1.23421 0.91211 0.76769 0.78309 1.90646 1.70566 1.38101 1.39133 1.86545 1.22171 1.63402 1.52437 1.22676 0.78258 1.01166 0.99639 1.19257 0.83154 0.86756 0.87490 1.90597 1.58421 1.43852 1.51116 1.42048 1.06519 1.46242 1.27308 1.19424 0.93565 1.27297 1.03270 0.86042 1.25037 0.96682 0.97482 0.96748 1.69617 1.14200 1.41366 1.26349 0.86679 0.81355 0.80945 0.80537 1.19435 1.19972 1.19325 1.60211 1.55849 1.02491 1.00925 1.23258 0.94191 0.91127 0.99917 1.21882 0.99360 0.95754 0.98085 1.21004 0.96685 0.99018 0.97643 1.20365 0.99923 0.95914 0.94950 1.21032 0.97259 0.96736 1.00424 1.20948 0.96877 0.99811 0.94801 1.20620 1.00193 0.95407 0.96559 1.19453 0.93407 0.94309 0.92218 0.91355 0.91446 0.91543 0.87549 0.86726 0.89540 0.89664 0.79402 0.91431 0.89167 0.89288 0.89905 0.89586 0.86431 0.85976 0.85725 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.31 7.45 37.16 0.28 -1.03 16 2 C 0.10 0.91 1.83 -67.72 -0.12 0.79 16 3 H 0.10 1.05 7.78 -51.93 -0.40 0.65 16 4 C -0.11 -1.09 5.25 -27.89 -0.15 -1.24 16 5 C 0.46 6.83 7.77 36.00 0.28 7.11 16 6 O -0.50 -8.24 15.20 -18.75 -0.29 -8.53 16 7 O -0.33 -5.93 9.75 -45.89 -0.45 -6.38 16 8 C 0.06 1.11 5.97 36.01 0.21 1.32 16 9 C 0.45 10.53 7.86 -10.98 -0.09 10.44 16 10 O -0.56 -15.47 16.08 -14.11 -0.23 -15.70 16 11 N -0.58 -13.98 5.09 -10.96 -0.06 -14.04 16 12 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 13 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 14 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 15 N -0.88 -25.33 13.96 55.50 0.77 -24.55 16 16 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 20 N -0.48 -5.21 4.35 -161.50 -0.70 -5.92 16 21 C 0.04 0.36 6.24 -2.43 -0.02 0.35 16 22 C -0.11 -0.83 6.12 -26.61 -0.16 -0.99 16 23 C -0.14 -1.31 5.31 -104.04 -0.55 -1.87 16 24 C -0.09 -0.78 10.03 -39.68 -0.40 -1.18 16 25 C -0.14 -1.09 10.06 -39.53 -0.40 -1.49 16 26 C -0.11 -0.93 10.02 -39.68 -0.40 -1.33 16 27 C -0.11 -1.16 10.07 -39.27 -0.40 -1.56 16 28 C 0.10 1.12 5.01 -83.41 -0.42 0.70 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.53 6.06 -51.93 -0.31 0.21 16 31 H 0.07 0.39 5.80 -51.93 -0.30 0.09 16 32 H 0.11 0.94 6.44 -51.93 -0.33 0.61 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.09 1.38 8.09 -51.93 -0.42 0.96 16 36 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 37 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.63 5.32 -51.93 -0.28 0.35 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.54 6.00 -51.92 -0.31 0.23 16 42 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -34.81 367.46 -8.65 -43.46 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.96 Total: 9.25 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -2.57 Total: 2.31 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.02 Total: -44.51 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.96 Total: -30.60 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.81 -8.65 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848870687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.002 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds