Wall clock time and date at job start Tue Mar 31 2020 18:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46331 * 2 1 4 4 C 1.52999 * 109.46956 * 119.99701 * 2 1 3 5 5 C 1.50697 * 109.46953 * 185.31660 * 4 2 1 6 6 O 1.20823 * 120.00230 * 5.81884 * 5 4 2 7 7 O 1.34225 * 120.00041 * 185.81728 * 5 4 2 8 8 C 1.45203 * 117.00174 * 185.17492 * 7 5 4 9 9 C 1.50707 * 109.47281 * 175.12874 * 8 7 5 10 10 O 1.21294 * 119.99673 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99739 * 179.97438 * 9 8 7 12 12 C 1.37105 * 119.99819 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99365 * 0.02562 * 12 11 9 14 14 C 1.38948 * 120.00145 * 180.02562 * 12 11 9 15 15 N 1.31411 * 119.99808 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99935 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46994 * 90.00258 * 16 14 12 18 18 H 1.48503 * 109.46894 * 210.00263 * 16 14 12 19 19 H 1.48496 * 109.46900 * 330.00385 * 16 14 12 20 20 N 1.46891 * 109.47017 * 240.00194 * 2 1 3 21 21 C 1.47901 * 111.00123 * 309.30499 * 20 2 1 22 22 C 1.54607 * 102.62529 * 94.66773 * 21 20 2 23 23 C 1.51580 * 102.81794 * 25.60665 * 22 21 20 24 24 C 1.37909 * 131.57329 * 163.76890 * 23 22 21 25 25 C 1.38303 * 120.08336 * 180.32458 * 24 23 22 26 26 C 1.38309 * 119.88180 * 359.97438 * 25 24 23 27 27 C 1.37908 * 120.26178 * 359.86842 * 26 25 24 28 28 C 1.38964 * 107.94035 * 343.81286 * 23 22 21 29 29 H 1.08998 * 109.47592 * 305.88712 * 1 2 3 30 30 H 1.08998 * 109.47179 * 65.88925 * 1 2 3 31 31 H 1.09005 * 109.46864 * 185.88933 * 1 2 3 32 32 H 1.09003 * 109.46980 * 65.31776 * 4 2 1 33 33 H 1.08998 * 109.47456 * 305.31634 * 4 2 1 34 34 H 1.09003 * 109.46876 * 295.12461 * 8 7 5 35 35 H 1.08994 * 109.47025 * 55.12891 * 8 7 5 36 36 H 0.96998 * 120.00536 * 0.02562 * 11 9 8 37 37 H 0.97004 * 119.99438 * 179.97438 * 15 14 12 38 38 H 1.08999 * 110.78632 * 212.94706 * 21 20 2 39 39 H 1.08996 * 110.78105 * 336.38573 * 21 20 2 40 40 H 1.09000 * 110.74861 * 143.93951 * 22 21 20 41 41 H 1.09010 * 110.74260 * 267.27950 * 22 21 20 42 42 H 1.08003 * 119.96249 * 0.29941 * 24 23 22 43 43 H 1.08003 * 120.06094 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.87095 * 179.89005 * 26 25 24 45 45 H 1.07999 * 119.89781 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5412 -0.6082 1.3169 6 8 4.1324 0.0750 0.5146 7 8 4.2216 -1.2665 2.2684 8 6 5.6507 -1.0213 2.3460 9 6 6.2209 -1.7467 3.5376 10 8 5.4941 -2.4052 4.2514 11 7 7.5382 -1.6638 3.8100 12 6 8.0568 -2.3233 4.8943 13 1 7.4097 -2.9096 5.5299 14 6 9.4148 -2.2374 5.1755 15 7 9.9119 -2.8700 6.2145 16 14 10.5341 -1.2239 4.0756 17 1 10.5944 0.1709 4.5817 18 1 11.8978 -1.8118 4.0810 19 1 9.9998 -1.2252 2.6901 20 7 2.0197 -0.6924 -1.1994 21 6 1.3717 -2.0133 -1.3505 22 6 0.1912 -1.7040 -2.2997 23 6 0.6771 -0.4821 -3.0537 24 6 0.2394 0.1066 -4.2215 25 6 0.8734 1.2350 -4.7089 26 6 1.9472 1.7727 -4.0228 27 6 2.3867 1.1896 -2.8528 28 6 1.7518 0.0532 -2.3540 29 1 -0.3634 0.6024 0.8325 30 1 -0.3633 0.4198 -0.9380 31 1 -0.3633 -1.0223 0.1055 32 1 1.7565 -1.7727 1.2030 33 1 1.6010 -0.2653 2.1367 34 1 6.1312 -1.3825 1.4367 35 1 5.8306 0.0485 2.4517 36 1 8.1193 -1.1369 3.2393 37 1 10.8601 -2.8103 6.4106 38 1 2.0557 -2.7300 -1.8051 39 1 1.0097 -2.3787 -0.3895 40 1 0.0170 -2.5353 -2.9829 41 1 -0.7106 -1.4740 -1.7320 42 1 -0.5992 -0.3143 -4.7563 43 1 0.5306 1.6955 -5.6237 44 1 2.4432 2.6528 -4.4045 45 1 3.2255 1.6146 -2.3216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848870687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:30 Heat of formation + Delta-G solvation = -89.871350 kcal Electronic energy + Delta-G solvation = -27958.262680 eV Core-core repulsion = 23940.649221 eV Total energy + Delta-G solvation = -4017.613459 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.27055 -41.39284 -40.15359 -38.32061 -37.32222 -36.08382 -34.56416 -33.87189 -32.53776 -30.62830 -29.88054 -29.47271 -28.95821 -26.38167 -24.04536 -23.67880 -22.32757 -22.05589 -21.53458 -20.56660 -20.44046 -18.77310 -18.38234 -17.81953 -17.58382 -17.25764 -16.83882 -16.54868 -16.42967 -16.30087 -15.80391 -15.44017 -14.92706 -14.68947 -14.61406 -14.31031 -14.26620 -14.00429 -13.98383 -13.56953 -13.50778 -13.21074 -13.18663 -13.05489 -12.97351 -12.90538 -12.47268 -12.25125 -12.01925 -11.98698 -11.85921 -11.78046 -11.67920 -11.59474 -11.46301 -10.60476 -10.36984 -10.34991 -9.69422 -8.77076 -8.47069 -6.09966 0.40535 0.47881 1.27042 1.28917 1.32276 1.41149 1.50331 1.75074 2.18955 2.64525 2.83216 2.87048 3.07262 3.52656 3.68845 3.77873 3.85318 3.92402 4.02725 4.09138 4.13060 4.15938 4.18856 4.26367 4.33543 4.47585 4.51763 4.53280 4.61874 4.70352 4.74812 4.83893 4.90739 5.02356 5.05248 5.20276 5.25756 5.40044 5.49354 5.51752 5.57038 5.62997 5.84464 5.86966 6.05042 6.36580 6.46678 6.74208 6.81819 7.24956 7.76682 8.69503 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.002257 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.158293 B =12403.297901 C =13159.452903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.100 3.900 3 H 0.077 0.923 4 C -0.103 4.103 5 C 0.460 3.540 6 O -0.517 6.517 7 O -0.352 6.352 8 C 0.071 3.929 9 C 0.449 3.551 10 O -0.608 6.608 11 N -0.577 5.577 12 C -0.333 4.333 13 H 0.062 0.938 14 C -0.008 4.008 15 N -0.924 5.924 16 Si 0.961 3.039 17 H -0.254 1.254 18 H -0.271 1.271 19 H -0.234 1.234 20 N -0.502 5.502 21 C 0.037 3.963 22 C -0.104 4.104 23 C -0.148 4.148 24 C -0.098 4.098 25 C -0.137 4.137 26 C -0.111 4.111 27 C -0.133 4.133 28 C 0.081 3.919 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.392 0.608 37 H 0.282 0.718 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.140 0.860 43 H 0.147 0.853 44 H 0.141 0.859 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.718 9.933 -23.617 33.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.007 4.007 3 H 0.096 0.904 4 C -0.140 4.140 5 C 0.303 3.697 6 O -0.405 6.405 7 O -0.268 6.268 8 C -0.007 4.007 9 C 0.236 3.764 10 O -0.493 6.493 11 N -0.219 5.219 12 C -0.462 4.462 13 H 0.080 0.920 14 C -0.208 4.208 15 N -0.564 5.564 16 Si 0.780 3.220 17 H -0.179 1.179 18 H -0.196 1.196 19 H -0.158 1.158 20 N -0.219 5.219 21 C -0.089 4.089 22 C -0.142 4.142 23 C -0.151 4.151 24 C -0.116 4.116 25 C -0.155 4.155 26 C -0.129 4.129 27 C -0.153 4.153 28 C -0.015 4.015 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.157 0.843 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.228 0.772 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.123 0.877 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.158 0.842 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.252 9.533 -23.099 32.804 hybrid contribution 0.780 0.378 -0.114 0.874 sum -20.472 9.911 -23.213 32.499 Atomic orbital electron populations 1.22587 0.93521 1.04089 1.03368 1.21592 0.94573 0.97547 0.86958 0.90432 1.21726 0.85305 1.05905 1.01070 1.24320 0.92641 0.75674 0.77032 1.90641 1.71244 1.38914 1.39673 1.86562 1.21774 1.64535 1.53901 1.22479 0.79137 1.01690 0.97347 1.20217 0.82577 0.85547 0.88052 1.90569 1.59625 1.45858 1.53205 1.41839 1.07212 1.46252 1.26615 1.19009 0.93800 1.28637 1.04713 0.92036 1.26078 0.97972 0.98394 0.98332 1.69780 1.15173 1.42926 1.28530 0.85425 0.78154 0.78917 0.79482 1.17870 1.19563 1.15753 1.60185 1.57003 1.03381 1.01331 1.23327 0.94458 0.90069 1.01059 1.21869 0.99171 0.95276 0.97891 1.21276 0.96306 0.99558 0.97929 1.20710 1.00376 0.95848 0.94674 1.21368 0.96580 0.96549 1.01008 1.21179 0.97257 1.00261 0.94220 1.20695 1.00517 0.96381 0.97698 1.19624 0.94362 0.94720 0.92773 0.90109 0.92107 0.89976 0.85911 0.84298 0.87353 0.87018 0.77180 0.90805 0.90330 0.87707 0.88760 0.88065 0.84241 0.83498 0.84153 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 7.45 71.98 0.54 -1.54 16 2 C 0.10 1.78 1.83 44.92 0.08 1.86 16 3 H 0.08 1.68 7.78 -2.38 -0.02 1.66 16 4 C -0.10 -1.89 5.25 29.85 0.16 -1.73 16 5 C 0.46 13.11 7.77 71.23 0.55 13.67 16 6 O -0.52 -16.74 15.20 21.97 0.33 -16.41 16 7 O -0.35 -12.31 9.75 -45.01 -0.44 -12.75 16 8 C 0.07 2.50 5.97 71.24 0.43 2.92 16 9 C 0.45 21.24 7.86 87.66 0.69 21.93 16 10 O -0.61 -34.94 16.08 15.72 0.25 -34.69 16 11 N -0.58 -27.75 5.09 -306.98 -1.56 -29.31 16 12 C -0.33 -19.48 10.16 84.04 0.85 -18.63 16 13 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 14 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 15 N -0.92 -54.98 13.96 21.66 0.30 -54.68 16 16 Si 0.96 38.59 27.74 68.60 1.90 40.49 16 17 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 18 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 19 H -0.23 -8.07 6.52 99.48 0.65 -7.42 16 20 N -0.50 -10.56 4.35 -664.87 -2.89 -13.46 16 21 C 0.04 0.59 6.24 86.66 0.54 1.13 16 22 C -0.10 -1.30 6.12 30.68 0.19 -1.12 16 23 C -0.15 -2.53 5.31 -19.49 -0.10 -2.63 16 24 C -0.10 -1.42 10.03 22.21 0.22 -1.20 16 25 C -0.14 -1.93 10.06 22.30 0.22 -1.70 16 26 C -0.11 -1.87 10.02 22.21 0.22 -1.64 16 27 C -0.13 -2.90 10.07 22.47 0.23 -2.68 16 28 C 0.08 1.74 5.01 38.29 0.19 1.93 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.83 6.06 -2.39 -0.01 0.81 16 31 H 0.08 0.70 5.80 -2.38 -0.01 0.69 16 32 H 0.12 1.88 6.44 -2.39 -0.02 1.87 16 33 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.11 3.37 8.09 -2.39 -0.02 3.35 16 36 H 0.39 15.63 5.76 -92.71 -0.53 15.09 16 37 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.10 1.24 5.32 -2.39 -0.01 1.23 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.10 0.95 6.00 -2.38 -0.01 0.94 16 42 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 43 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 44 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 45 H 0.11 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -80.83 367.46 3.81 -77.02 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: 0.44 Total: 33.17 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 5.48 Total: 10.60 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -4.15 Total: -97.44 kcal Atomic # 8 Polarization: -63.99 SS G_CDS: 0.15 Total: -63.84 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 1.90 Total: 40.49 kcal Total: -80.83 3.81 -77.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848870687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.852 kcal (2) G-P(sol) polarization free energy of solvation -80.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds