Wall clock time and date at job start Tue Mar 31 2020 18:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 117.00083 * 2 1 4 4 C 1.38816 * 120.01826 * 0.02665 * 3 2 1 5 5 C 1.38177 * 120.09344 * 179.97438 * 4 3 2 6 6 C 1.38146 * 120.13127 * 359.75850 * 5 4 3 7 7 C 1.50703 * 119.98409 * 180.28099 * 6 5 4 8 8 C 1.52999 * 117.49723 * 8.85702 * 7 6 5 9 9 C 1.52997 * 59.99968 * 252.50873 * 8 7 6 10 10 C 1.38949 * 120.03358 * 0.51376 * 6 5 4 11 11 N 1.39721 * 120.04453 * 179.74049 * 10 6 5 12 12 C 1.34779 * 119.99427 * 154.14537 * 11 10 6 13 13 O 1.21378 * 120.00632 * 3.96572 * 12 11 10 14 14 C 1.49354 * 119.99649 * 183.96213 * 12 11 10 15 15 O 1.21360 * 120.00525 * 0.02562 * 14 12 11 16 16 N 1.34782 * 120.00091 * 180.02562 * 14 12 11 17 17 C 1.46500 * 120.00498 * 180.02562 * 16 14 12 18 18 H 1.09000 * 109.46658 * 325.00185 * 17 16 14 19 19 C 1.52998 * 109.47250 * 84.99417 * 17 16 14 20 20 C 1.50690 * 109.47313 * 204.99651 * 17 16 14 21 21 H 1.08006 * 120.00367 * 334.89142 * 20 17 16 22 22 C 1.37877 * 120.00132 * 154.88427 * 20 17 16 23 23 N 1.31512 * 120.00466 * 174.94803 * 22 20 17 24 24 Si 1.86799 * 119.99791 * 354.95203 * 22 20 17 25 25 H 1.48501 * 109.46921 * 275.02454 * 24 22 20 26 26 H 1.48496 * 109.47373 * 35.02436 * 24 22 20 27 27 H 1.48497 * 109.47295 * 155.02775 * 24 22 20 28 28 C 1.38565 * 120.01561 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46838 * 299.99858 * 1 2 3 31 31 H 1.08998 * 109.46779 * 59.99944 * 1 2 3 32 32 H 1.07995 * 119.95043 * 359.97036 * 4 3 2 33 33 H 1.08006 * 119.93276 * 180.02562 * 5 4 3 34 34 H 1.09000 * 115.55137 * 154.56244 * 7 6 5 35 35 H 1.08994 * 117.50195 * 0.02562 * 8 7 6 36 36 H 1.09005 * 117.49748 * 145.02160 * 8 7 6 37 37 H 1.09000 * 117.50582 * 252.51010 * 9 8 7 38 38 H 1.09006 * 117.50117 * 107.48800 * 9 8 7 39 39 H 0.96999 * 120.00405 * 334.14871 * 11 10 6 40 40 H 0.97008 * 119.99398 * 359.97438 * 16 14 12 41 41 H 1.09005 * 109.47232 * 54.99211 * 19 17 16 42 42 H 1.08995 * 109.47614 * 174.99401 * 19 17 16 43 43 H 1.09008 * 109.47520 * 295.00114 * 19 17 16 44 44 H 0.97003 * 120.00767 * 180.02562 * 23 22 20 45 45 H 1.08009 * 120.06512 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 0.0006 5 6 1.9161 3.6073 0.0011 6 6 3.2954 3.6846 0.0061 7 6 3.9743 5.0300 0.0131 8 6 3.0947 6.2640 0.2233 9 6 3.6865 5.9726 -1.1572 10 6 4.0570 2.5224 -0.0002 11 7 5.4521 2.6003 -0.0006 12 6 6.1836 1.5866 0.5030 13 8 5.6346 0.5759 0.8907 14 6 7.6701 1.7067 0.5839 15 8 8.2193 2.7174 0.1967 16 7 8.4019 0.6928 1.0869 17 6 9.8599 0.8108 1.1668 18 1 10.2259 1.3779 0.3109 19 6 10.2430 1.5344 2.4593 20 6 10.4764 -0.5642 1.1593 21 1 9.9050 -1.4142 1.5023 22 6 11.7698 -0.7374 0.7144 23 7 12.3422 -1.9183 0.8001 24 14 12.7094 0.7054 -0.0101 25 1 12.3812 0.8356 -1.4526 26 1 12.3258 1.9523 0.6992 27 1 14.1680 0.4754 0.1468 28 6 3.4297 1.2837 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2119 2.3182 0.0005 33 1 1.3256 4.5117 0.0019 34 1 4.9775 5.0481 0.4390 35 1 2.0251 6.1029 0.3569 36 1 3.5191 7.0944 0.7877 37 1 4.5003 6.6111 -1.5010 38 1 3.0062 5.6196 -1.9322 39 1 5.8940 3.3840 -0.3632 40 1 7.9629 -0.1149 1.3968 41 1 9.8015 1.0159 3.3105 42 1 11.3280 1.5439 2.5626 43 1 9.8721 2.5589 2.4259 44 1 13.2524 -2.0401 0.4875 45 1 4.0193 0.3787 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873821005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:04 Heat of formation + Delta-G solvation = -46.120528 kcal Electronic energy + Delta-G solvation = -28005.952499 eV Core-core repulsion = 23990.236218 eV Total energy + Delta-G solvation = -4015.716281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19837 -39.99070 -38.79692 -38.17085 -36.32349 -35.40053 -34.50903 -32.42602 -30.72085 -30.03537 -29.62301 -27.49567 -25.42907 -24.96696 -24.15965 -22.74060 -22.25899 -20.70896 -20.54083 -19.79451 -19.09008 -18.19578 -17.07685 -16.61760 -16.52074 -15.98596 -15.89903 -15.74217 -15.35300 -15.26639 -15.02323 -14.25854 -14.20390 -13.79890 -13.53215 -13.33854 -13.18656 -12.98966 -12.67027 -12.65078 -12.41102 -11.89129 -11.76465 -11.66242 -11.61614 -11.45273 -11.27657 -11.05720 -10.89293 -10.79170 -10.58380 -10.50584 -10.35910 -9.92091 -9.32117 -9.17760 -8.77187 -8.54114 -8.38254 -8.02808 -6.27092 -4.31536 0.94199 1.21361 1.80102 2.49325 3.09884 3.22450 3.30426 3.31966 3.35366 3.53839 3.84839 3.97717 4.27519 4.30425 4.51724 4.59915 4.72535 4.81048 4.85257 4.87534 4.89895 5.06142 5.12166 5.15638 5.22252 5.32806 5.38666 5.55251 5.60682 5.79187 5.82141 6.00257 6.03928 6.20828 6.27211 6.28064 6.41124 6.54868 6.61870 6.76006 6.92855 7.12411 7.20175 7.25174 7.35983 7.69328 8.00134 8.37605 8.50754 8.74833 9.32085 10.84524 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.002860 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.289080 B = 9786.185247 C =11278.867309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.144 3.856 4 C -0.224 4.224 5 C -0.062 4.062 6 C -0.116 4.116 7 C -0.117 4.117 8 C -0.173 4.173 9 C -0.170 4.170 10 C 0.195 3.805 11 N -0.644 5.644 12 C 0.507 3.493 13 O -0.494 6.494 14 C 0.496 3.504 15 O -0.538 6.538 16 N -0.661 5.661 17 C 0.233 3.767 18 H 0.052 0.948 19 C -0.152 4.152 20 C -0.536 4.536 21 H 0.082 0.918 22 C 0.083 3.917 23 N -0.886 5.886 24 Si 0.871 3.129 25 H -0.272 1.272 26 H -0.257 1.257 27 H -0.284 1.284 28 C -0.166 4.166 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.425 0.575 40 H 0.408 0.592 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.030 0.970 44 H 0.269 0.731 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.667 12.936 -2.423 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.098 3.902 4 C -0.244 4.244 5 C -0.081 4.081 6 C -0.118 4.118 7 C -0.135 4.135 8 C -0.210 4.210 9 C -0.207 4.207 10 C 0.100 3.900 11 N -0.289 5.289 12 C 0.290 3.710 13 O -0.367 6.367 14 C 0.275 3.725 15 O -0.417 6.417 16 N -0.310 5.310 17 C 0.131 3.869 18 H 0.070 0.930 19 C -0.211 4.211 20 C -0.574 4.574 21 H 0.100 0.900 22 C -0.122 4.122 23 N -0.521 5.521 24 Si 0.697 3.303 25 H -0.198 1.198 26 H -0.181 1.181 27 H -0.210 1.210 28 C -0.186 4.186 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.264 0.736 40 H 0.244 0.756 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.049 0.951 44 H 0.079 0.921 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -23.263 12.566 -2.415 26.550 hybrid contribution 0.299 0.752 -0.392 0.899 sum -22.964 13.318 -2.807 26.695 Atomic orbital electron populations 1.23054 0.78496 1.03942 1.01217 1.86113 1.21200 1.26755 1.88489 1.18785 0.91813 0.84154 0.95491 1.21150 0.99922 0.92132 1.11168 1.20530 0.92914 0.97146 0.97499 1.18727 0.93064 0.91824 1.08228 1.20863 1.00134 0.88175 1.04369 1.23032 0.99450 0.98612 0.99896 1.23071 1.03679 1.02283 0.91639 1.17180 0.81955 0.92747 0.98160 1.43212 1.04272 1.22326 1.59139 1.20919 0.89475 0.83125 0.77510 1.90691 1.72430 1.28572 1.45004 1.19720 0.86429 0.85365 0.81001 1.90721 1.72263 1.29648 1.49085 1.46441 1.09576 1.17096 1.57882 1.19277 0.74738 0.97918 0.94978 0.93001 1.22318 1.01429 0.97972 0.99370 1.20969 0.99252 0.91897 1.45315 0.89960 1.24865 0.97090 0.95809 0.94442 1.69871 1.14256 1.22554 1.45465 0.86971 0.79152 0.83564 0.80585 1.19777 1.18137 1.21018 1.20831 0.91971 0.98859 1.06983 0.88239 0.92672 0.92715 0.85457 0.85335 0.86957 0.88429 0.88369 0.88276 0.88515 0.73625 0.75621 0.93177 0.92116 0.95050 0.92104 0.81785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.78 10.49 -19.42 -0.20 -3.98 16 3 C 0.14 1.81 6.68 -39.25 -0.26 1.55 16 4 C -0.22 -2.25 9.04 -39.39 -0.36 -2.60 16 5 C -0.06 -0.60 9.28 -39.64 -0.37 -0.97 16 6 C -0.12 -1.28 5.63 -104.39 -0.59 -1.87 16 7 C -0.12 -1.09 5.41 -91.77 -0.50 -1.59 16 8 C -0.17 -1.26 9.86 -26.73 -0.26 -1.52 16 9 C -0.17 -1.29 10.16 -26.73 -0.27 -1.56 16 10 C 0.20 2.62 6.43 -83.77 -0.54 2.08 16 11 N -0.64 -8.95 5.04 -10.31 -0.05 -9.00 16 12 C 0.51 8.44 7.77 -11.63 -0.09 8.35 16 13 O -0.49 -8.89 13.39 5.47 0.07 -8.82 16 14 C 0.50 9.44 7.85 -11.63 -0.09 9.35 16 15 O -0.54 -11.04 16.14 5.49 0.09 -10.95 16 16 N -0.66 -13.53 5.06 -55.40 -0.28 -13.81 16 17 C 0.23 5.42 2.12 -69.09 -0.15 5.27 16 18 H 0.05 1.28 5.34 -51.93 -0.28 1.01 16 19 C -0.15 -3.25 9.10 37.16 0.34 -2.91 16 20 C -0.54 -14.29 9.06 -34.45 -0.31 -14.60 16 21 H 0.08 2.33 8.02 -52.48 -0.42 1.91 16 22 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 23 N -0.89 -25.83 13.96 55.43 0.77 -25.06 16 24 Si 0.87 20.79 26.19 -169.99 -4.45 16.34 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.26 -5.90 6.15 56.52 0.35 -5.56 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C -0.17 -2.41 8.73 -39.24 -0.34 -2.75 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 32 H 0.13 0.94 6.29 -52.49 -0.33 0.61 16 33 H 0.13 0.92 6.02 -52.48 -0.32 0.60 16 34 H 0.11 1.09 7.19 -51.93 -0.37 0.72 16 35 H 0.10 0.62 6.18 -51.93 -0.32 0.30 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.42 5.28 6.89 -40.82 -0.28 5.00 16 40 H 0.41 7.95 8.03 -40.82 -0.33 7.62 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.31 6.73 -51.93 -0.35 0.96 16 43 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.16 2.71 5.52 -52.48 -0.29 2.42 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -31.22 371.74 -7.15 -38.37 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -5.81 Total: 11.71 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -2.89 Total: -0.41 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.44 Total: -47.87 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.04 Total: -23.74 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.45 Total: 16.34 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.22 -7.15 -38.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873821005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.751 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds