Wall clock time and date at job start Tue Mar 31 2020 18:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 117.00083 * 2 1 4 4 C 1.38816 * 120.01826 * 0.02665 * 3 2 1 5 5 C 1.38177 * 120.09344 * 179.97438 * 4 3 2 6 6 C 1.38146 * 120.13127 * 359.75850 * 5 4 3 7 7 C 1.50703 * 119.98409 * 180.28099 * 6 5 4 8 8 C 1.52999 * 117.49723 * 8.85702 * 7 6 5 9 9 C 1.52997 * 59.99968 * 252.50873 * 8 7 6 10 10 C 1.38949 * 120.03358 * 0.51376 * 6 5 4 11 11 N 1.39721 * 120.04453 * 179.74049 * 10 6 5 12 12 C 1.34779 * 119.99427 * 154.14537 * 11 10 6 13 13 O 1.21378 * 120.00632 * 3.96572 * 12 11 10 14 14 C 1.49354 * 119.99649 * 183.96213 * 12 11 10 15 15 O 1.21360 * 120.00525 * 0.02562 * 14 12 11 16 16 N 1.34782 * 120.00091 * 180.02562 * 14 12 11 17 17 C 1.46500 * 120.00498 * 180.02562 * 16 14 12 18 18 H 1.09000 * 109.46658 * 325.00185 * 17 16 14 19 19 C 1.52998 * 109.47250 * 84.99417 * 17 16 14 20 20 C 1.50690 * 109.47313 * 204.99651 * 17 16 14 21 21 H 1.08006 * 120.00367 * 334.89142 * 20 17 16 22 22 C 1.37877 * 120.00132 * 154.88427 * 20 17 16 23 23 N 1.31512 * 120.00466 * 174.94803 * 22 20 17 24 24 Si 1.86799 * 119.99791 * 354.95203 * 22 20 17 25 25 H 1.48501 * 109.46921 * 275.02454 * 24 22 20 26 26 H 1.48496 * 109.47373 * 35.02436 * 24 22 20 27 27 H 1.48497 * 109.47295 * 155.02775 * 24 22 20 28 28 C 1.38565 * 120.01561 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46838 * 299.99858 * 1 2 3 31 31 H 1.08998 * 109.46779 * 59.99944 * 1 2 3 32 32 H 1.07995 * 119.95043 * 359.97036 * 4 3 2 33 33 H 1.08006 * 119.93276 * 180.02562 * 5 4 3 34 34 H 1.09000 * 115.55137 * 154.56244 * 7 6 5 35 35 H 1.08994 * 117.50195 * 0.02562 * 8 7 6 36 36 H 1.09005 * 117.49748 * 145.02160 * 8 7 6 37 37 H 1.09000 * 117.50582 * 252.51010 * 9 8 7 38 38 H 1.09006 * 117.50117 * 107.48800 * 9 8 7 39 39 H 0.96999 * 120.00405 * 334.14871 * 11 10 6 40 40 H 0.97008 * 119.99398 * 359.97438 * 16 14 12 41 41 H 1.09005 * 109.47232 * 54.99211 * 19 17 16 42 42 H 1.08995 * 109.47614 * 174.99401 * 19 17 16 43 43 H 1.09008 * 109.47520 * 295.00114 * 19 17 16 44 44 H 0.97003 * 120.00767 * 180.02562 * 23 22 20 45 45 H 1.08009 * 120.06512 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 0.0006 5 6 1.9161 3.6073 0.0011 6 6 3.2954 3.6846 0.0061 7 6 3.9743 5.0300 0.0131 8 6 3.0947 6.2640 0.2233 9 6 3.6865 5.9726 -1.1572 10 6 4.0570 2.5224 -0.0002 11 7 5.4521 2.6003 -0.0006 12 6 6.1836 1.5866 0.5030 13 8 5.6346 0.5759 0.8907 14 6 7.6701 1.7067 0.5839 15 8 8.2193 2.7174 0.1967 16 7 8.4019 0.6928 1.0869 17 6 9.8599 0.8108 1.1668 18 1 10.2259 1.3779 0.3109 19 6 10.2430 1.5344 2.4593 20 6 10.4764 -0.5642 1.1593 21 1 9.9050 -1.4142 1.5023 22 6 11.7698 -0.7374 0.7144 23 7 12.3422 -1.9183 0.8001 24 14 12.7094 0.7054 -0.0101 25 1 12.3812 0.8356 -1.4526 26 1 12.3258 1.9523 0.6992 27 1 14.1680 0.4754 0.1468 28 6 3.4297 1.2837 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2119 2.3182 0.0005 33 1 1.3256 4.5117 0.0019 34 1 4.9775 5.0481 0.4390 35 1 2.0251 6.1029 0.3569 36 1 3.5191 7.0944 0.7877 37 1 4.5003 6.6111 -1.5010 38 1 3.0062 5.6196 -1.9322 39 1 5.8940 3.3840 -0.3632 40 1 7.9629 -0.1149 1.3968 41 1 9.8015 1.0159 3.3105 42 1 11.3280 1.5439 2.5626 43 1 9.8721 2.5589 2.4259 44 1 13.2524 -2.0401 0.4875 45 1 4.0193 0.3787 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873821005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:03 Heat of formation + Delta-G solvation = -67.461047 kcal Electronic energy + Delta-G solvation = -28006.877893 eV Core-core repulsion = 23990.236218 eV Total energy + Delta-G solvation = -4016.641675 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.35794 -41.11156 -39.94891 -39.24640 -37.26427 -36.94975 -35.71724 -34.42022 -31.88362 -31.49803 -30.58934 -28.14641 -27.35376 -26.38056 -24.97175 -23.61775 -23.11665 -22.18245 -21.40731 -21.32169 -20.35247 -19.37422 -18.62798 -17.95176 -17.61285 -17.12900 -17.01934 -16.80712 -16.61049 -16.51502 -15.91141 -15.70997 -15.37777 -15.07229 -14.87591 -14.58555 -14.40212 -14.30012 -13.94038 -13.88162 -13.44809 -13.40381 -13.15062 -12.89684 -12.67443 -12.55639 -12.36582 -12.28774 -12.20956 -12.01388 -11.82246 -11.64289 -11.32614 -11.27191 -11.12808 -10.87246 -10.60739 -10.12258 -9.52199 -8.88744 -8.39651 -6.48331 -0.15749 0.34323 0.55889 1.18689 1.33887 1.36537 1.46512 2.03190 2.26994 2.28481 2.58118 2.66507 2.98580 3.13425 3.36981 3.59129 3.79101 3.94809 4.04512 4.17672 4.26613 4.32279 4.36885 4.42351 4.42698 4.48074 4.57872 4.67513 4.73002 4.74976 4.83564 4.94497 4.98277 5.06522 5.16748 5.19586 5.21284 5.31390 5.34521 5.40400 5.45763 5.47650 5.69243 5.85861 6.07702 6.44255 6.45473 6.54377 6.66432 6.90961 7.19656 8.75492 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.002860 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.289080 B = 9786.185247 C =11278.867309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.130 3.870 4 C -0.210 4.210 5 C -0.058 4.058 6 C -0.109 4.109 7 C -0.141 4.141 8 C -0.158 4.158 9 C -0.163 4.163 10 C 0.170 3.830 11 N -0.627 5.627 12 C 0.512 3.488 13 O -0.513 6.513 14 C 0.501 3.499 15 O -0.550 6.550 16 N -0.668 5.668 17 C 0.237 3.763 18 H 0.042 0.958 19 C -0.147 4.147 20 C -0.538 4.538 21 H 0.052 0.948 22 C 0.032 3.968 23 N -0.931 5.931 24 Si 0.928 3.072 25 H -0.272 1.272 26 H -0.240 1.240 27 H -0.277 1.277 28 C -0.194 4.194 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.431 0.569 40 H 0.411 0.589 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.272 0.728 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.163 16.209 -2.782 30.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.084 3.916 4 C -0.229 4.229 5 C -0.076 4.076 6 C -0.112 4.112 7 C -0.160 4.160 8 C -0.195 4.195 9 C -0.200 4.200 10 C 0.076 3.924 11 N -0.273 5.273 12 C 0.295 3.705 13 O -0.388 6.388 14 C 0.281 3.719 15 O -0.429 6.429 16 N -0.317 5.317 17 C 0.134 3.866 18 H 0.060 0.940 19 C -0.205 4.205 20 C -0.576 4.576 21 H 0.070 0.930 22 C -0.169 4.169 23 N -0.569 5.569 24 Si 0.752 3.248 25 H -0.197 1.197 26 H -0.164 1.164 27 H -0.203 1.203 28 C -0.214 4.214 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.178 0.822 33 H 0.181 0.819 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.272 0.728 40 H 0.247 0.753 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -25.806 15.874 -2.780 30.425 hybrid contribution 0.873 -0.284 -0.291 0.963 sum -24.933 15.590 -3.071 29.566 Atomic orbital electron populations 1.23383 0.76034 1.05551 1.02655 1.86079 1.23856 1.27005 1.88541 1.18897 0.91362 0.85369 0.95990 1.21511 1.01416 0.91146 1.08855 1.20949 0.92420 0.98309 0.95887 1.18967 0.93730 0.91684 1.06788 1.20862 1.00329 0.88125 1.06642 1.23165 0.99914 0.97126 0.99294 1.23140 1.03920 1.01214 0.91721 1.17338 0.81321 0.93474 1.00293 1.43026 1.04790 1.21487 1.58019 1.20354 0.88288 0.83687 0.78191 1.90711 1.72315 1.29419 1.46315 1.19996 0.87509 0.84544 0.79887 1.90701 1.72948 1.29970 1.49313 1.46239 1.08762 1.17917 1.58796 1.19064 0.76044 0.95827 0.95633 0.93974 1.22217 1.01365 0.98574 0.98381 1.21153 0.99219 0.92757 1.44499 0.93020 1.25638 0.98118 0.98246 0.94880 1.69989 1.14922 1.24764 1.47190 0.86051 0.78054 0.80992 0.79733 1.19746 1.16369 1.20272 1.20723 0.93195 0.98286 1.09235 0.86810 0.91267 0.91035 0.82202 0.81918 0.87907 0.86894 0.87515 0.87680 0.88002 0.72843 0.75292 0.92456 0.92328 0.93580 0.91868 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -8.13 10.49 -92.41 -0.97 -9.10 16 3 C 0.13 3.19 6.68 22.49 0.15 3.34 16 4 C -0.21 -3.60 9.04 22.39 0.20 -3.40 16 5 C -0.06 -0.91 9.28 22.23 0.21 -0.70 16 6 C -0.11 -2.21 5.63 -19.71 -0.11 -2.32 16 7 C -0.14 -2.31 5.41 -11.54 -0.06 -2.38 16 8 C -0.16 -1.72 9.86 30.59 0.30 -1.42 16 9 C -0.16 -1.99 10.16 30.59 0.31 -1.68 16 10 C 0.17 4.56 6.43 38.20 0.25 4.81 16 11 N -0.63 -17.64 5.04 -304.88 -1.54 -19.17 16 12 C 0.51 17.53 7.77 87.24 0.68 18.21 16 13 O -0.51 -19.38 13.39 -3.33 -0.04 -19.42 16 14 C 0.50 19.23 7.85 87.24 0.68 19.92 16 15 O -0.55 -22.30 16.14 -3.28 -0.05 -22.35 16 16 N -0.67 -27.85 5.06 -447.54 -2.27 -30.12 16 17 C 0.24 11.08 2.12 44.24 0.09 11.17 16 18 H 0.04 2.06 5.34 -2.39 -0.01 2.05 16 19 C -0.15 -6.13 9.10 71.98 0.66 -5.48 16 20 C -0.54 -29.41 9.06 25.60 0.23 -29.18 16 21 H 0.05 3.07 8.02 -2.91 -0.02 3.05 16 22 C 0.03 1.78 5.47 84.66 0.46 2.24 16 23 N -0.93 -55.70 13.96 21.45 0.30 -55.40 16 24 Si 0.93 42.85 26.19 68.60 1.80 44.64 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.24 -10.36 6.15 99.48 0.61 -9.75 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 28 C -0.19 -5.80 8.73 22.49 0.20 -5.60 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 0.64 7.66 -2.39 -0.02 0.63 16 31 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 32 H 0.16 1.64 6.29 -2.91 -0.02 1.62 16 33 H 0.16 1.46 6.02 -2.91 -0.02 1.44 16 34 H 0.10 1.87 7.19 -2.39 -0.02 1.85 16 35 H 0.11 0.87 6.18 -2.39 -0.01 0.86 16 36 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.43 10.66 6.89 -92.71 -0.64 10.02 16 40 H 0.41 16.67 8.03 -92.70 -0.74 15.92 16 41 H 0.06 2.27 8.14 -2.38 -0.02 2.26 16 42 H 0.06 2.45 6.73 -2.39 -0.02 2.43 16 43 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 44 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 45 H 0.13 4.77 5.52 -2.91 -0.02 4.76 16 Total: -1.00 -69.49 371.74 2.17 -67.33 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -0.42 Total: 34.72 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 5.36 Total: 8.87 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -3.50 Total: -104.68 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -1.07 Total: -50.88 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.80 Total: 44.64 kcal Total: -69.49 2.17 -67.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873821005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.134 kcal (2) G-P(sol) polarization free energy of solvation -69.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds