Wall clock time and date at job start Tue Mar 31 2020 18:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47088 * 2 1 4 4 C 1.50699 * 109.47353 * 239.99437 * 2 1 3 5 5 H 1.08008 * 119.99737 * 240.00253 * 4 2 1 6 6 C 1.37877 * 120.00031 * 60.00319 * 4 2 1 7 7 N 1.31516 * 119.99838 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99906 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47202 * 60.00098 * 8 6 4 10 10 H 1.48503 * 109.47021 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47041 * 299.99761 * 8 6 4 12 12 C 1.50706 * 109.46616 * 119.99772 * 2 1 3 13 13 O 1.21274 * 120.00335 * 109.41208 * 12 2 1 14 14 N 1.34782 * 119.99746 * 289.40496 * 12 2 1 15 15 C 1.46496 * 119.99789 * 186.05672 * 14 12 2 16 16 C 1.46505 * 120.00051 * 6.06525 * 14 12 2 17 17 C 1.52997 * 109.47078 * 96.17567 * 16 14 12 18 18 H 1.09007 * 110.57829 * 301.06459 * 17 16 14 19 19 C 1.54096 * 110.71342 * 178.47860 * 17 16 14 20 20 N 1.47091 * 103.77484 * 241.62085 * 19 17 16 21 21 C 1.39951 * 125.55715 * 179.90716 * 20 19 17 22 22 C 1.38864 * 120.07059 * 179.71726 * 21 20 19 23 23 C 1.38115 * 119.93067 * 180.25554 * 22 21 20 24 24 C 1.38284 * 120.06705 * 359.41073 * 23 22 21 25 25 C 1.38286 * 120.13967 * 0.60958 * 24 23 22 26 26 C 1.38112 * 120.06795 * 359.67194 * 25 24 23 27 27 C 1.34007 * 108.88489 * 359.63232 * 20 19 17 28 28 O 1.21508 * 123.07260 * 180.20496 * 27 20 19 29 29 O 1.33783 * 113.85036 * 0.24999 * 27 20 19 30 30 H 1.09003 * 109.47048 * 69.88011 * 1 2 3 31 31 H 1.09000 * 109.47072 * 189.87302 * 1 2 3 32 32 H 1.08993 * 109.47684 * 309.88146 * 1 2 3 33 33 H 0.96996 * 119.99703 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47182 * 265.21821 * 15 14 12 35 35 H 1.08996 * 109.47139 * 25.22711 * 15 14 12 36 36 H 1.09009 * 109.46797 * 145.22112 * 15 14 12 37 37 H 1.08999 * 109.46828 * 336.17431 * 16 14 12 38 38 H 1.08995 * 109.46792 * 216.17212 * 16 14 12 39 39 H 1.09000 * 110.66808 * 122.99302 * 19 17 16 40 40 H 1.08999 * 110.45948 * 0.14245 * 19 17 16 41 41 H 1.07997 * 120.03436 * 359.97263 * 22 21 20 42 42 H 1.07997 * 119.96794 * 179.69556 * 23 22 21 43 43 H 1.08000 * 119.92945 * 180.27890 * 24 23 22 44 44 H 1.08001 * 119.96598 * 179.69793 * 25 24 23 45 45 H 1.07998 * 120.03361 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 0.9429 0.8295 -2.6035 8 14 2.3215 -1.1207 -4.0078 9 1 1.8259 -2.5206 -4.0075 10 1 1.8272 -0.4203 -5.2204 11 1 3.8065 -1.1213 -4.0079 12 6 2.0322 -0.7104 1.2306 13 8 2.5634 -1.7960 1.1298 14 7 1.8911 -0.1392 2.4432 15 6 2.4952 -0.7646 3.6222 16 6 1.1335 1.1070 2.5822 17 6 -0.3034 0.7866 2.9988 18 1 -0.7824 0.1443 2.2597 19 6 -1.1169 2.0812 3.1903 20 7 -1.5056 2.0440 4.6084 21 6 -2.2643 3.0162 5.2701 22 6 -2.5712 2.8626 6.6156 23 6 -3.3246 3.8212 7.2645 24 6 -3.7629 4.9391 6.5786 25 6 -3.4593 5.0949 5.2385 26 6 -2.7112 4.1369 4.5826 27 6 -1.0200 0.9244 5.1620 28 8 -1.1934 0.6324 6.3287 29 8 -0.3261 0.1581 4.3130 30 1 -0.3633 0.3535 -0.9650 31 1 -0.3633 -1.0124 0.1762 32 1 -0.3634 0.6589 0.7885 33 1 0.7089 1.1610 -3.4845 34 1 1.7568 -1.3950 4.1176 35 1 3.3454 -1.3735 3.3150 36 1 2.8329 0.0096 4.3113 37 1 1.1262 1.6359 1.6292 38 1 1.6009 1.7335 3.3419 39 1 -1.9997 2.0789 2.5510 40 1 -0.4973 2.9543 2.9859 41 1 -2.2250 1.9921 7.1531 42 1 -3.5678 3.6999 8.3097 43 1 -4.3480 5.6896 7.0893 44 1 -3.8071 5.9667 4.7043 45 1 -2.4740 4.2593 3.5361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874591311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:45 Heat of formation + Delta-G solvation = -57.670233 kcal Electronic energy + Delta-G solvation = -28959.854911 eV Core-core repulsion = 24943.637797 eV Total energy + Delta-G solvation = -4016.217114 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.18121 -39.53791 -39.06256 -37.55529 -35.71526 -35.11132 -33.97963 -31.59088 -31.16375 -30.63231 -29.76286 -26.99880 -25.75181 -25.33468 -23.92789 -23.39417 -22.08111 -21.96736 -21.05601 -18.83505 -18.18476 -17.47066 -16.99076 -16.67932 -16.47576 -16.10197 -15.61123 -15.45604 -15.05974 -14.70162 -14.46963 -14.32781 -14.21989 -14.09584 -13.67355 -13.40175 -13.10410 -12.88798 -12.75611 -12.49286 -12.38505 -12.13290 -11.96060 -11.68698 -11.49561 -11.36623 -11.13875 -10.98928 -10.81373 -10.67711 -10.53003 -10.44248 -10.34098 -10.06146 -9.21034 -9.12029 -8.73717 -8.40128 -8.31733 -8.22880 -6.14117 -4.17348 1.02411 1.14696 2.05512 2.52240 3.11125 3.30345 3.33212 3.34975 3.40306 3.56052 3.60405 3.96815 4.22885 4.39135 4.42864 4.67967 4.74151 4.88785 4.89886 5.05680 5.08602 5.17203 5.18970 5.26670 5.39099 5.40239 5.49500 5.61322 5.81746 5.84886 6.00923 6.10241 6.17127 6.21213 6.24475 6.32143 6.34530 6.60412 6.74271 6.79084 6.91836 7.10023 7.25132 7.61489 7.72607 7.83500 7.96752 8.24960 8.91229 9.06829 9.48840 10.93012 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.002911 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.112109 B = 9615.432598 C =10835.804527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.031 3.969 3 H 0.051 0.949 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.060 3.940 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.518 3.482 13 O -0.535 6.535 14 N -0.627 5.627 15 C 0.090 3.910 16 C 0.109 3.891 17 C 0.043 3.957 18 H 0.138 0.862 19 C 0.066 3.934 20 N -0.571 5.571 21 C 0.185 3.815 22 C -0.156 4.156 23 C -0.091 4.091 24 C -0.148 4.148 25 C -0.091 4.091 26 C -0.156 4.156 27 C 0.643 3.357 28 O -0.509 6.509 29 O -0.306 6.306 30 H 0.100 0.900 31 H 0.031 0.969 32 H 0.018 0.982 33 H 0.262 0.738 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.156 0.844 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.789 11.327 14.659 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.010 3.990 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.309 3.691 13 O -0.409 6.409 14 N -0.363 5.363 15 C -0.053 4.053 16 C -0.016 4.016 17 C -0.013 4.013 18 H 0.155 0.845 19 C -0.057 4.057 20 N -0.307 5.307 21 C 0.093 3.907 22 C -0.176 4.176 23 C -0.109 4.109 24 C -0.167 4.167 25 C -0.110 4.110 26 C -0.177 4.177 27 C 0.399 3.601 28 O -0.394 6.394 29 O -0.215 6.215 30 H 0.119 0.881 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.174 0.826 42 H 0.144 0.856 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.441 10.347 15.037 20.110 hybrid contribution 0.175 -0.228 -0.927 0.971 sum -8.267 10.119 14.109 19.231 Atomic orbital electron populations 1.22069 0.96755 0.98476 1.02919 1.18867 0.94021 0.96718 0.89400 0.93128 1.21092 1.31099 1.12817 0.88926 0.90906 1.24921 0.95039 0.95045 0.99096 1.69821 1.36964 1.23031 1.23805 0.86501 0.79330 0.79805 0.81520 1.20133 1.21322 1.20172 1.22106 0.77097 0.85742 0.84124 1.90546 1.43233 1.21192 1.85941 1.47998 1.54670 1.25158 1.08432 1.21516 0.98563 0.97928 0.87326 1.21909 0.87805 0.87824 1.04054 1.25134 0.99597 0.93433 0.83176 0.84515 1.23053 1.01316 0.99769 0.81577 1.45467 1.52629 1.21202 1.11423 1.17459 0.93390 0.88131 0.91770 1.21647 1.00792 1.02192 0.93001 1.21062 0.96530 0.93405 0.99937 1.21154 1.02100 0.98578 0.94839 1.20937 0.97151 0.98283 0.94615 1.20781 1.02417 0.94065 1.00415 1.18607 0.77271 0.78856 0.85352 1.90911 1.61623 1.74386 1.12480 1.87449 1.67576 1.44613 1.21881 0.88145 0.95022 0.96375 0.92800 0.93027 0.90896 0.92570 0.86059 0.90215 0.87488 0.87592 0.82638 0.85571 0.85969 0.85460 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.05 37.16 0.30 -2.61 16 2 C 0.03 0.70 1.80 -92.92 -0.17 0.53 16 3 H 0.05 1.15 7.10 -51.93 -0.37 0.78 16 4 C -0.50 -13.46 8.37 -34.44 -0.29 -13.75 16 5 H 0.07 2.10 6.81 -52.48 -0.36 1.74 16 6 C 0.06 1.57 5.27 -17.82 -0.09 1.47 16 7 N -0.90 -23.37 11.30 55.43 0.63 -22.75 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.52 11.25 6.93 -10.98 -0.08 11.17 16 13 O -0.53 -13.64 15.09 5.56 0.08 -13.55 16 14 N -0.63 -10.61 2.87 -181.57 -0.52 -11.13 16 15 C 0.09 1.38 9.87 59.84 0.59 1.97 16 16 C 0.11 1.39 4.53 -4.04 -0.02 1.37 16 17 C 0.04 0.52 3.20 -26.16 -0.08 0.43 16 18 H 0.14 1.75 5.75 -51.93 -0.30 1.45 16 19 C 0.07 0.60 6.14 -3.15 -0.02 0.58 16 20 N -0.57 -6.65 3.16 -118.27 -0.37 -7.02 16 21 C 0.19 2.08 6.63 -83.69 -0.56 1.53 16 22 C -0.16 -1.82 9.31 -39.40 -0.37 -2.18 16 23 C -0.09 -0.84 10.04 -39.61 -0.40 -1.23 16 24 C -0.15 -1.18 10.04 -39.55 -0.40 -1.58 16 25 C -0.09 -0.72 10.04 -39.61 -0.40 -1.12 16 26 C -0.16 -1.40 9.49 -39.40 -0.37 -1.78 16 27 C 0.64 9.34 8.77 53.71 0.47 9.81 16 28 O -0.51 -8.62 14.74 -19.11 -0.28 -8.90 16 29 O -0.31 -4.42 9.78 -37.86 -0.37 -4.79 16 30 H 0.10 2.28 5.87 -51.93 -0.30 1.98 16 31 H 0.03 0.65 8.11 -51.93 -0.42 0.23 16 32 H 0.02 0.27 3.74 -51.93 -0.19 0.08 16 33 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 34 H 0.05 0.81 7.78 -51.93 -0.40 0.40 16 35 H 0.07 1.21 7.37 -51.93 -0.38 0.83 16 36 H 0.06 0.72 8.01 -51.92 -0.42 0.30 16 37 H 0.12 1.53 5.30 -51.93 -0.28 1.25 16 38 H 0.08 0.85 8.02 -51.93 -0.42 0.43 16 39 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.11 0.73 7.73 -51.93 -0.40 0.33 16 41 H 0.16 2.09 5.24 -52.49 -0.28 1.81 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 45 H 0.13 0.91 7.31 -52.49 -0.38 0.53 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -32.58 361.03 -8.02 -40.59 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.72 Total: 1.54 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -1.87 Total: 4.62 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: -0.27 Total: -40.89 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.57 Total: -27.25 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.58 -8.02 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874591311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.076 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds