Wall clock time and date at job start Tue Mar 31 2020 18:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47088 * 2 1 4 4 C 1.50699 * 109.47353 * 239.99437 * 2 1 3 5 5 H 1.08008 * 119.99737 * 240.00253 * 4 2 1 6 6 C 1.37877 * 120.00031 * 60.00319 * 4 2 1 7 7 N 1.31516 * 119.99838 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99906 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47202 * 60.00098 * 8 6 4 10 10 H 1.48503 * 109.47021 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47041 * 299.99761 * 8 6 4 12 12 C 1.50706 * 109.46616 * 119.99772 * 2 1 3 13 13 O 1.21274 * 120.00335 * 109.41208 * 12 2 1 14 14 N 1.34782 * 119.99746 * 289.40496 * 12 2 1 15 15 C 1.46496 * 119.99789 * 186.05672 * 14 12 2 16 16 C 1.46505 * 120.00051 * 6.06525 * 14 12 2 17 17 C 1.52997 * 109.47078 * 96.17567 * 16 14 12 18 18 H 1.09007 * 110.57829 * 301.06459 * 17 16 14 19 19 C 1.54096 * 110.71342 * 178.47860 * 17 16 14 20 20 N 1.47091 * 103.77484 * 241.62085 * 19 17 16 21 21 C 1.39951 * 125.55715 * 179.90716 * 20 19 17 22 22 C 1.38864 * 120.07059 * 179.71726 * 21 20 19 23 23 C 1.38115 * 119.93067 * 180.25554 * 22 21 20 24 24 C 1.38284 * 120.06705 * 359.41073 * 23 22 21 25 25 C 1.38286 * 120.13967 * 0.60958 * 24 23 22 26 26 C 1.38112 * 120.06795 * 359.67194 * 25 24 23 27 27 C 1.34007 * 108.88489 * 359.63232 * 20 19 17 28 28 O 1.21508 * 123.07260 * 180.20496 * 27 20 19 29 29 O 1.33783 * 113.85036 * 0.24999 * 27 20 19 30 30 H 1.09003 * 109.47048 * 69.88011 * 1 2 3 31 31 H 1.09000 * 109.47072 * 189.87302 * 1 2 3 32 32 H 1.08993 * 109.47684 * 309.88146 * 1 2 3 33 33 H 0.96996 * 119.99703 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47182 * 265.21821 * 15 14 12 35 35 H 1.08996 * 109.47139 * 25.22711 * 15 14 12 36 36 H 1.09009 * 109.46797 * 145.22112 * 15 14 12 37 37 H 1.08999 * 109.46828 * 336.17431 * 16 14 12 38 38 H 1.08995 * 109.46792 * 216.17212 * 16 14 12 39 39 H 1.09000 * 110.66808 * 122.99302 * 19 17 16 40 40 H 1.08999 * 110.45948 * 0.14245 * 19 17 16 41 41 H 1.07997 * 120.03436 * 359.97263 * 22 21 20 42 42 H 1.07997 * 119.96794 * 179.69556 * 23 22 21 43 43 H 1.08000 * 119.92945 * 180.27890 * 24 23 22 44 44 H 1.08001 * 119.96598 * 179.69793 * 25 24 23 45 45 H 1.07998 * 120.03361 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 0.9429 0.8295 -2.6035 8 14 2.3215 -1.1207 -4.0078 9 1 1.8259 -2.5206 -4.0075 10 1 1.8272 -0.4203 -5.2204 11 1 3.8065 -1.1213 -4.0079 12 6 2.0322 -0.7104 1.2306 13 8 2.5634 -1.7960 1.1298 14 7 1.8911 -0.1392 2.4432 15 6 2.4952 -0.7646 3.6222 16 6 1.1335 1.1070 2.5822 17 6 -0.3034 0.7866 2.9988 18 1 -0.7824 0.1443 2.2597 19 6 -1.1169 2.0812 3.1903 20 7 -1.5056 2.0440 4.6084 21 6 -2.2643 3.0162 5.2701 22 6 -2.5712 2.8626 6.6156 23 6 -3.3246 3.8212 7.2645 24 6 -3.7629 4.9391 6.5786 25 6 -3.4593 5.0949 5.2385 26 6 -2.7112 4.1369 4.5826 27 6 -1.0200 0.9244 5.1620 28 8 -1.1934 0.6324 6.3287 29 8 -0.3261 0.1581 4.3130 30 1 -0.3633 0.3535 -0.9650 31 1 -0.3633 -1.0124 0.1762 32 1 -0.3634 0.6589 0.7885 33 1 0.7089 1.1610 -3.4845 34 1 1.7568 -1.3950 4.1176 35 1 3.3454 -1.3735 3.3150 36 1 2.8329 0.0096 4.3113 37 1 1.1262 1.6359 1.6292 38 1 1.6009 1.7335 3.3419 39 1 -1.9997 2.0789 2.5510 40 1 -0.4973 2.9543 2.9859 41 1 -2.2250 1.9921 7.1531 42 1 -3.5678 3.6999 8.3097 43 1 -4.3480 5.6896 7.0893 44 1 -3.8071 5.9667 4.7043 45 1 -2.4740 4.2593 3.5361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874591311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:44 Heat of formation + Delta-G solvation = -77.339768 kcal Electronic energy + Delta-G solvation = -28960.707846 eV Core-core repulsion = 24943.637797 eV Total energy + Delta-G solvation = -4017.070049 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.15562 -40.89929 -40.01862 -38.69750 -36.61718 -36.54555 -35.83659 -32.87041 -32.15707 -31.81970 -30.66258 -28.22717 -27.22263 -26.89924 -24.76637 -24.35295 -23.75609 -22.72727 -21.97453 -20.17688 -19.18752 -18.60653 -18.27387 -17.94541 -17.65422 -17.40071 -17.08134 -16.55027 -16.29392 -16.09289 -15.90224 -15.12088 -15.08151 -14.90170 -14.73818 -14.56057 -14.50232 -14.31104 -13.86275 -13.58937 -13.56382 -13.33656 -13.16827 -12.94320 -12.79014 -12.73064 -12.65335 -12.42852 -12.23021 -12.15630 -12.01524 -11.91593 -11.39102 -11.31938 -11.00915 -10.58947 -10.27193 -9.88424 -9.69513 -9.02427 -8.13595 -6.22211 0.28811 0.46722 1.15973 1.43258 1.44019 1.52147 1.52443 1.84138 2.05405 2.24899 2.47201 2.91121 3.02541 3.16326 3.35692 3.53482 3.80259 4.01980 4.07347 4.21359 4.25120 4.30772 4.39740 4.43593 4.50866 4.55283 4.57702 4.59069 4.65553 4.72860 4.80557 4.90632 4.96363 5.02246 5.16424 5.39645 5.41281 5.46409 5.56201 5.58448 5.65637 5.77315 5.97030 6.06861 6.18582 6.23597 6.53558 6.72326 6.83524 7.38895 7.48293 8.91044 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.002911 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.112109 B = 9615.432598 C =10835.804527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.055 0.945 4 C -0.532 4.532 5 H 0.041 0.959 6 C 0.029 3.971 7 N -0.901 5.901 8 Si 0.946 3.054 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.516 3.484 13 O -0.586 6.586 14 N -0.619 5.619 15 C 0.091 3.909 16 C 0.102 3.898 17 C 0.042 3.958 18 H 0.128 0.872 19 C 0.069 3.931 20 N -0.563 5.563 21 C 0.160 3.840 22 C -0.182 4.182 23 C -0.099 4.099 24 C -0.144 4.144 25 C -0.090 4.090 26 C -0.152 4.152 27 C 0.637 3.363 28 O -0.546 6.546 29 O -0.323 6.323 30 H 0.078 0.922 31 H 0.016 0.984 32 H 0.068 0.932 33 H 0.266 0.734 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.139 0.861 43 H 0.149 0.851 44 H 0.158 0.842 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.219 14.643 14.518 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.009 3.991 3 H 0.072 0.928 4 C -0.570 4.570 5 H 0.059 0.941 6 C -0.171 4.171 7 N -0.540 5.540 8 Si 0.772 3.228 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.205 1.205 12 C 0.308 3.692 13 O -0.465 6.465 14 N -0.352 5.352 15 C -0.051 4.051 16 C -0.021 4.021 17 C -0.014 4.014 18 H 0.145 0.855 19 C -0.052 4.052 20 N -0.299 5.299 21 C 0.068 3.932 22 C -0.203 4.203 23 C -0.117 4.117 24 C -0.163 4.163 25 C -0.109 4.109 26 C -0.172 4.172 27 C 0.393 3.607 28 O -0.434 6.434 29 O -0.233 6.233 30 H 0.097 0.903 31 H 0.035 0.965 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.147 0.853 38 H 0.128 0.872 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.157 0.843 43 H 0.167 0.833 44 H 0.176 0.824 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.905 13.735 14.908 22.561 hybrid contribution 0.574 -1.178 -0.799 1.535 sum -9.331 12.557 14.109 21.066 Atomic orbital electron populations 1.21905 0.94802 0.98719 1.03505 1.18797 0.95502 0.96190 0.88563 0.92776 1.21232 1.31784 1.12671 0.91355 0.94102 1.25405 0.95224 0.95732 1.00773 1.69862 1.36681 1.23063 1.24411 0.85810 0.78652 0.78749 0.79582 1.20796 1.19737 1.20475 1.21928 0.76717 0.85144 0.85446 1.90518 1.45710 1.23334 1.86918 1.47908 1.54074 1.25969 1.07248 1.21581 0.97770 0.98793 0.86987 1.22244 0.88091 0.86198 1.05555 1.25082 0.99315 0.94831 0.82161 0.85491 1.23306 1.02407 0.99031 0.80483 1.45457 1.52038 1.20249 1.12160 1.17702 0.94563 0.89034 0.91888 1.21591 1.02516 1.02349 0.93817 1.21278 0.96181 0.93458 1.00783 1.21522 1.01307 0.98254 0.95187 1.21373 0.96055 0.98764 0.94661 1.21085 1.01684 0.93017 1.01456 1.18754 0.77389 0.79523 0.85009 1.90891 1.63016 1.75403 1.14086 1.87428 1.67711 1.45379 1.22746 0.90322 0.96464 0.91371 0.92436 0.93445 0.92588 0.89267 0.85283 0.87176 0.84989 0.84355 0.85376 0.84313 0.83323 0.82446 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 8.05 71.98 0.58 -4.60 16 2 C 0.03 1.38 1.80 -12.29 -0.02 1.36 16 3 H 0.05 2.41 7.10 -2.39 -0.02 2.39 16 4 C -0.53 -29.22 8.37 25.60 0.21 -29.01 16 5 H 0.04 2.46 6.81 -2.91 -0.02 2.44 16 6 C 0.03 1.51 5.27 84.65 0.45 1.95 16 7 N -0.90 -46.15 11.30 21.45 0.24 -45.90 16 8 Si 0.95 43.02 29.54 68.60 2.03 45.04 16 9 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 C 0.52 22.70 6.93 87.66 0.61 23.30 16 13 O -0.59 -31.12 15.09 -3.01 -0.05 -31.17 16 14 N -0.62 -20.37 2.87 -846.75 -2.43 -22.80 16 15 C 0.09 2.76 9.87 127.77 1.26 4.03 16 16 C 0.10 2.33 4.53 86.38 0.39 2.72 16 17 C 0.04 0.91 3.20 30.96 0.10 1.01 16 18 H 0.13 2.99 5.75 -2.38 -0.01 2.97 16 19 C 0.07 1.00 6.14 86.64 0.53 1.53 16 20 N -0.56 -12.03 3.16 -759.79 -2.40 -14.43 16 21 C 0.16 3.31 6.63 38.14 0.25 3.56 16 22 C -0.18 -4.21 9.31 22.39 0.21 -4.00 16 23 C -0.10 -1.68 10.04 22.25 0.22 -1.46 16 24 C -0.14 -1.83 10.04 22.29 0.22 -1.61 16 25 C -0.09 -1.05 10.04 22.25 0.22 -0.83 16 26 C -0.15 -2.17 9.49 22.39 0.21 -1.96 16 27 C 0.64 18.28 8.77 129.91 1.14 19.42 16 28 O -0.55 -19.18 14.74 19.66 0.29 -18.90 16 29 O -0.32 -9.08 9.78 -47.42 -0.46 -9.55 16 30 H 0.08 3.49 5.87 -2.39 -0.01 3.48 16 31 H 0.02 0.69 8.11 -2.39 -0.02 0.67 16 32 H 0.07 1.92 3.74 -2.39 -0.01 1.91 16 33 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 34 H 0.05 1.49 7.78 -2.39 -0.02 1.47 16 35 H 0.06 1.89 7.37 -2.39 -0.02 1.87 16 36 H 0.09 2.11 8.01 -2.38 -0.02 2.09 16 37 H 0.13 2.81 5.30 -2.39 -0.01 2.80 16 38 H 0.11 1.92 8.02 -2.39 -0.02 1.90 16 39 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.14 1.16 7.73 -2.39 -0.02 1.15 16 41 H 0.13 3.66 5.24 -2.91 -0.02 3.64 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 44 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 45 H 0.15 1.37 7.31 -2.91 -0.02 1.35 16 Total: -1.00 -75.00 361.03 4.84 -70.17 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.03 Total: 12.09 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 6.59 Total: 15.44 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -4.59 Total: -83.14 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -0.22 Total: -59.61 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -75.00 4.84 -70.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874591311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.171 kcal (2) G-P(sol) polarization free energy of solvation -75.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds