Wall clock time and date at job start Tue Mar 31 2020 17:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.78515 * 2 1 4 4 C 1.52782 * 109.56127 * 239.76876 * 2 1 3 5 5 N 1.46898 * 109.42492 * 186.61190 * 4 2 1 6 6 C 1.46901 * 110.99710 * 187.11073 * 5 4 2 7 7 C 1.50695 * 109.47115 * 45.70229 * 6 5 4 8 8 C 1.35513 * 120.04870 * 259.72004 * 7 6 5 9 9 C 1.39489 * 121.58362 * 179.67622 * 8 7 6 10 10 C 1.35510 * 121.58371 * 0.63027 * 9 8 7 11 11 C 1.41768 * 119.89820 * 359.68443 * 10 9 8 12 12 N 1.32333 * 131.00618 * 180.02562 * 11 10 9 13 13 S 1.55533 * 109.41948 * 179.97438 * 12 11 10 14 14 N 1.55537 * 100.20831 * 359.97438 * 13 12 11 15 15 C 1.32332 * 109.42340 * 0.02562 * 14 13 12 16 16 C 1.46898 * 111.26757 * 62.96493 * 5 4 2 17 17 C 1.53245 * 109.33945 * 296.89352 * 16 5 4 18 18 H 1.09000 * 109.78804 * 294.02667 * 17 16 5 19 19 C 1.53004 * 109.62729 * 173.54298 * 17 16 5 20 20 N 1.47078 * 108.51900 * 53.83242 * 17 16 5 21 21 C 1.36937 * 120.87643 * 128.81560 * 20 17 16 22 22 H 1.07999 * 119.99744 * 233.63605 * 21 20 17 23 23 C 1.38813 * 120.00207 * 53.64662 * 21 20 17 24 24 N 1.31615 * 119.99973 * 200.96958 * 23 21 20 25 25 Si 1.86799 * 119.99947 * 20.96491 * 23 21 20 26 26 H 1.48502 * 109.47001 * 264.79920 * 25 23 21 27 27 H 1.48499 * 109.47369 * 24.79854 * 25 23 21 28 28 H 1.48496 * 109.47094 * 144.80160 * 25 23 21 29 29 H 1.08996 * 109.47547 * 303.68961 * 1 2 3 30 30 H 1.09001 * 109.47069 * 63.68966 * 1 2 3 31 31 H 1.09002 * 109.47376 * 183.68531 * 1 2 3 32 32 H 1.09000 * 109.56245 * 66.55221 * 4 2 1 33 33 H 1.09005 * 109.35623 * 306.54375 * 4 2 1 34 34 H 1.09004 * 109.46440 * 165.69683 * 6 5 4 35 35 H 1.09001 * 109.47276 * 285.69756 * 6 5 4 36 36 H 1.07998 * 119.20623 * 0.02562 * 8 7 6 37 37 H 1.08002 * 119.21230 * 180.31489 * 9 8 7 38 38 H 1.07998 * 120.05340 * 179.66430 * 10 9 8 39 39 H 1.09000 * 109.48995 * 176.93661 * 16 5 4 40 40 H 1.08996 * 109.52127 * 56.86670 * 16 5 4 41 41 H 1.09003 * 109.46755 * 294.09141 * 19 17 16 42 42 H 1.09001 * 109.47248 * 54.08856 * 19 17 16 43 43 H 1.08999 * 109.47060 * 174.09045 * 19 17 16 44 44 H 0.97006 * 120.00175 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0415 -0.7248 -1.2439 5 7 3.5018 -0.8625 -1.1632 6 6 4.0495 -1.4024 -2.4147 7 6 3.4312 -0.6827 -3.5855 8 6 2.4183 -1.2582 -4.2777 9 6 1.8183 -0.6180 -5.3621 10 6 2.2291 0.6034 -5.7812 11 6 3.2884 1.2622 -5.1078 12 7 3.8571 2.4374 -5.3241 13 16 4.9833 2.6676 -4.2764 14 7 4.8757 1.3473 -3.4614 15 6 3.9119 0.5949 -3.9676 16 6 3.8964 -1.6901 -0.0155 17 6 3.4619 -0.9993 1.2816 18 1 4.0199 -0.0719 1.4106 19 6 3.7239 -1.9263 2.4703 20 7 2.0240 -0.7027 1.1939 21 6 1.1671 -1.0761 2.1947 22 1 0.2900 -1.6624 1.9638 23 6 1.4257 -0.7008 3.5058 24 7 0.8791 -1.3667 4.5009 25 14 2.5496 0.7491 3.8580 26 1 3.9290 0.2576 4.1049 27 1 2.5529 1.6677 2.6912 28 1 2.0604 1.4746 5.0578 29 1 -0.3634 0.5700 0.8550 30 1 -0.3633 0.4555 -0.9212 31 1 -0.3634 -1.0255 0.0661 32 1 1.7786 -0.1528 -2.1336 33 1 1.5854 -1.7134 -1.2991 34 1 5.1301 -1.2595 -2.4298 35 1 3.8228 -2.4665 -2.4814 36 1 2.0633 -2.2335 -3.9791 37 1 1.0103 -1.1098 -5.8833 38 1 1.7504 1.0741 -6.6272 39 1 4.9789 -1.8180 -0.0144 40 1 3.4149 -2.6653 -0.0870 41 1 3.0784 -2.8017 2.3975 42 1 4.7671 -2.2424 2.4615 43 1 3.5129 -1.3954 3.3985 44 1 1.0601 -1.1047 5.4172 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878774357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:38 Heat of formation + Delta-G solvation = 119.637209 kcal Electronic energy + Delta-G solvation = -27207.613747 eV Core-core repulsion = 23674.130884 eV Total energy + Delta-G solvation = -3533.482864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.09367 -38.75198 -36.76592 -35.18502 -33.71229 -32.88576 -31.81862 -30.56836 -28.08648 -27.60478 -26.40666 -25.90708 -24.20120 -22.69740 -21.82831 -20.68703 -20.31349 -19.25911 -19.18392 -17.62262 -16.49427 -16.31497 -15.96141 -15.37866 -15.26044 -14.87536 -14.69327 -14.36951 -13.87351 -13.40343 -13.20864 -12.66586 -12.63438 -12.43333 -12.21332 -12.00836 -11.98026 -11.89297 -11.70758 -11.65831 -11.37338 -11.12362 -11.00230 -10.88135 -10.77201 -10.55792 -10.41762 -10.13826 -10.08784 -9.90939 -9.64980 -9.39194 -8.82222 -8.44860 -8.36395 -7.83274 -6.39821 -5.98730 -3.54967 -0.21988 1.30314 1.37589 1.65898 1.71670 3.36359 3.37166 3.49768 3.62087 3.98621 4.37740 4.56418 4.69657 4.72049 4.88940 4.97046 4.99394 5.08916 5.28991 5.42057 5.57135 5.72710 5.78171 5.83157 5.88690 5.98975 6.06046 6.12668 6.14487 6.18270 6.19576 6.31937 6.37092 6.38998 6.47056 6.50629 6.56248 6.75223 6.77494 7.03602 7.09525 7.18972 7.38619 7.53113 7.60294 8.14838 8.56298 9.08121 9.73204 10.31444 11.14332 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.003812 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.492305 B = 7344.196282 C = 7729.655224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.170 3.830 3 H 0.028 0.972 4 C 0.047 3.953 5 N -0.526 5.526 6 C 0.097 3.903 7 C -0.014 4.014 8 C -0.102 4.102 9 C -0.084 4.084 10 C -0.077 4.077 11 C 0.080 3.920 12 N -0.603 5.603 13 S 0.777 5.223 14 N -0.565 5.565 15 C 0.095 3.905 16 C 0.051 3.949 17 C 0.171 3.829 18 H 0.030 0.970 19 C -0.142 4.142 20 N -0.598 5.598 21 C -0.267 4.267 22 H 0.070 0.930 23 C 0.057 3.943 24 N -0.896 5.896 25 Si 0.871 3.129 26 H -0.281 1.281 27 H -0.269 1.269 28 H -0.302 1.302 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.062 0.938 40 H 0.035 0.965 41 H 0.067 0.933 42 H 0.033 0.967 43 H 0.068 0.932 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.191 2.331 -20.444 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.064 3.936 3 H 0.046 0.954 4 C -0.082 4.082 5 N -0.250 5.250 6 C -0.030 4.030 7 C -0.021 4.021 8 C -0.127 4.127 9 C -0.109 4.109 10 C -0.101 4.101 11 C -0.080 4.080 12 N -0.453 5.453 13 S 0.824 5.176 14 N -0.415 5.415 15 C -0.065 4.065 16 C -0.078 4.078 17 C 0.065 3.935 18 H 0.047 0.953 19 C -0.200 4.200 20 N -0.324 5.324 21 C -0.396 4.396 22 H 0.088 0.912 23 C -0.145 4.145 24 N -0.536 5.536 25 Si 0.699 3.301 26 H -0.208 1.208 27 H -0.193 1.193 28 H -0.230 1.230 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.087 0.913 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.804 4.594 -19.885 21.851 hybrid contribution -0.802 -1.277 0.023 1.508 sum 7.002 3.318 -19.863 21.320 Atomic orbital electron populations 1.21687 0.95228 1.02010 0.99807 1.20528 0.93027 0.93808 0.86274 0.95392 1.22645 0.86657 0.99350 0.99541 1.62030 1.11645 1.50130 1.01147 1.21044 0.99735 0.95103 0.87155 1.18993 0.95982 0.90397 0.96769 1.20704 0.95365 1.00968 0.95681 1.20713 0.99435 0.94399 0.96324 1.20198 0.94866 0.94858 1.00226 1.21361 0.99863 0.89588 0.97177 1.72202 1.18523 1.22263 1.32357 1.78585 1.21134 1.15029 1.02808 1.72281 1.24873 1.11890 1.32488 1.21058 0.93703 0.97275 0.94421 1.22669 0.98900 0.94662 0.91583 1.20683 0.86131 0.95061 0.91644 0.95280 1.22009 0.98270 1.00806 0.98896 1.44470 1.02701 1.65792 1.19462 1.18409 1.06858 1.29120 0.85206 0.91246 1.25846 0.96089 0.96438 0.96128 1.69883 1.45691 1.39031 0.98969 0.87149 0.80563 0.85184 0.77174 1.20764 1.19323 1.23017 0.91831 0.94546 0.92495 0.91845 0.95059 0.89887 0.93898 0.84677 0.84481 0.84560 0.91922 0.94702 0.91407 0.94795 0.91332 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.19 37.16 0.30 -2.21 16 2 C 0.17 3.57 3.64 -67.73 -0.25 3.32 16 3 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 4 C 0.05 0.84 4.26 -3.94 -0.02 0.82 16 5 N -0.53 -9.15 4.77 -236.06 -1.13 -10.28 16 6 C 0.10 1.37 5.39 -4.98 -0.03 1.34 16 7 C -0.01 -0.18 3.72 -104.25 -0.39 -0.57 16 8 C -0.10 -1.06 8.45 -40.09 -0.34 -1.40 16 9 C -0.08 -0.74 9.89 -40.09 -0.40 -1.14 16 10 C -0.08 -0.79 10.09 -39.21 -0.40 -1.18 16 11 C 0.08 1.03 7.17 -83.16 -0.60 0.44 16 12 N -0.60 -7.73 11.44 25.62 0.29 -7.44 16 13 S 0.78 8.55 23.60 -107.50 -2.54 6.01 16 14 N -0.57 -8.12 11.39 25.63 0.29 -7.82 16 15 C 0.10 1.34 6.92 -83.16 -0.58 0.77 16 16 C 0.05 0.93 4.87 -3.70 -0.02 0.92 16 17 C 0.17 3.75 2.46 -67.49 -0.17 3.59 16 18 H 0.03 0.69 7.38 -51.93 -0.38 0.31 16 19 C -0.14 -3.14 7.85 37.16 0.29 -2.85 16 20 N -0.60 -14.19 2.26 -157.27 -0.36 -14.54 16 21 C -0.27 -7.19 7.28 -15.06 -0.11 -7.30 16 22 H 0.07 2.04 7.23 -52.49 -0.38 1.66 16 23 C 0.06 1.59 3.97 -17.43 -0.07 1.52 16 24 N -0.90 -26.44 13.97 55.49 0.78 -25.66 16 25 Si 0.87 22.46 24.63 -169.99 -4.19 18.27 16 26 H -0.28 -7.03 6.44 56.52 0.36 -6.67 16 27 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.30 -7.91 7.11 56.52 0.40 -7.50 16 29 H 0.06 1.34 7.83 -51.93 -0.41 0.94 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.13 7.38 -51.93 -0.38 0.75 16 32 H 0.06 1.05 5.94 -51.93 -0.31 0.75 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.04 0.55 7.89 -51.93 -0.41 0.14 16 36 H 0.14 1.19 7.98 -52.49 -0.42 0.77 16 37 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.57 7.73 -51.93 -0.40 1.17 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 1.69 3.30 -51.93 -0.17 1.52 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -31.97 350.90 -10.54 -42.51 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.24 Total: -2.40 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.75 Total: -3.93 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -0.12 Total: -65.75 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.19 Total: 18.27 kcal Atomic # 16 Polarization: 8.55 SS G_CDS: -2.54 Total: 6.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.97 -10.54 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878774357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.148 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds