Wall clock time and date at job start Tue Mar 31 2020 17:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.78515 * 2 1 4 4 C 1.52782 * 109.56127 * 239.76876 * 2 1 3 5 5 N 1.46898 * 109.42492 * 186.61190 * 4 2 1 6 6 C 1.46901 * 110.99710 * 187.11073 * 5 4 2 7 7 C 1.50695 * 109.47115 * 45.70229 * 6 5 4 8 8 C 1.35513 * 120.04870 * 259.72004 * 7 6 5 9 9 C 1.39489 * 121.58362 * 179.67622 * 8 7 6 10 10 C 1.35510 * 121.58371 * 0.63027 * 9 8 7 11 11 C 1.41768 * 119.89820 * 359.68443 * 10 9 8 12 12 N 1.32333 * 131.00618 * 180.02562 * 11 10 9 13 13 S 1.55533 * 109.41948 * 179.97438 * 12 11 10 14 14 N 1.55537 * 100.20831 * 359.97438 * 13 12 11 15 15 C 1.32332 * 109.42340 * 0.02562 * 14 13 12 16 16 C 1.46898 * 111.26757 * 62.96493 * 5 4 2 17 17 C 1.53245 * 109.33945 * 296.89352 * 16 5 4 18 18 H 1.09000 * 109.78804 * 294.02667 * 17 16 5 19 19 C 1.53004 * 109.62729 * 173.54298 * 17 16 5 20 20 N 1.47078 * 108.51900 * 53.83242 * 17 16 5 21 21 C 1.36937 * 120.87643 * 128.81560 * 20 17 16 22 22 H 1.07999 * 119.99744 * 233.63605 * 21 20 17 23 23 C 1.38813 * 120.00207 * 53.64662 * 21 20 17 24 24 N 1.31615 * 119.99973 * 200.96958 * 23 21 20 25 25 Si 1.86799 * 119.99947 * 20.96491 * 23 21 20 26 26 H 1.48502 * 109.47001 * 264.79920 * 25 23 21 27 27 H 1.48499 * 109.47369 * 24.79854 * 25 23 21 28 28 H 1.48496 * 109.47094 * 144.80160 * 25 23 21 29 29 H 1.08996 * 109.47547 * 303.68961 * 1 2 3 30 30 H 1.09001 * 109.47069 * 63.68966 * 1 2 3 31 31 H 1.09002 * 109.47376 * 183.68531 * 1 2 3 32 32 H 1.09000 * 109.56245 * 66.55221 * 4 2 1 33 33 H 1.09005 * 109.35623 * 306.54375 * 4 2 1 34 34 H 1.09004 * 109.46440 * 165.69683 * 6 5 4 35 35 H 1.09001 * 109.47276 * 285.69756 * 6 5 4 36 36 H 1.07998 * 119.20623 * 0.02562 * 8 7 6 37 37 H 1.08002 * 119.21230 * 180.31489 * 9 8 7 38 38 H 1.07998 * 120.05340 * 179.66430 * 10 9 8 39 39 H 1.09000 * 109.48995 * 176.93661 * 16 5 4 40 40 H 1.08996 * 109.52127 * 56.86670 * 16 5 4 41 41 H 1.09003 * 109.46755 * 294.09141 * 19 17 16 42 42 H 1.09001 * 109.47248 * 54.08856 * 19 17 16 43 43 H 1.08999 * 109.47060 * 174.09045 * 19 17 16 44 44 H 0.97006 * 120.00175 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0415 -0.7248 -1.2439 5 7 3.5018 -0.8625 -1.1632 6 6 4.0495 -1.4024 -2.4147 7 6 3.4312 -0.6827 -3.5855 8 6 2.4183 -1.2582 -4.2777 9 6 1.8183 -0.6180 -5.3621 10 6 2.2291 0.6034 -5.7812 11 6 3.2884 1.2622 -5.1078 12 7 3.8571 2.4374 -5.3241 13 16 4.9833 2.6676 -4.2764 14 7 4.8757 1.3473 -3.4614 15 6 3.9119 0.5949 -3.9676 16 6 3.8964 -1.6901 -0.0155 17 6 3.4619 -0.9993 1.2816 18 1 4.0199 -0.0719 1.4106 19 6 3.7239 -1.9263 2.4703 20 7 2.0240 -0.7027 1.1939 21 6 1.1671 -1.0761 2.1947 22 1 0.2900 -1.6624 1.9638 23 6 1.4257 -0.7008 3.5058 24 7 0.8791 -1.3667 4.5009 25 14 2.5496 0.7491 3.8580 26 1 3.9290 0.2576 4.1049 27 1 2.5529 1.6677 2.6912 28 1 2.0604 1.4746 5.0578 29 1 -0.3634 0.5700 0.8550 30 1 -0.3633 0.4555 -0.9212 31 1 -0.3634 -1.0255 0.0661 32 1 1.7786 -0.1528 -2.1336 33 1 1.5854 -1.7134 -1.2991 34 1 5.1301 -1.2595 -2.4298 35 1 3.8228 -2.4665 -2.4814 36 1 2.0633 -2.2335 -3.9791 37 1 1.0103 -1.1098 -5.8833 38 1 1.7504 1.0741 -6.6272 39 1 4.9789 -1.8180 -0.0144 40 1 3.4149 -2.6653 -0.0870 41 1 3.0784 -2.8017 2.3975 42 1 4.7671 -2.2424 2.4615 43 1 3.5129 -1.3954 3.3985 44 1 1.0601 -1.1047 5.4172 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878774357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:37 Heat of formation + Delta-G solvation = 97.667815 kcal Electronic energy + Delta-G solvation = -27208.566412 eV Core-core repulsion = 23674.130884 eV Total energy + Delta-G solvation = -3534.435528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.97957 -40.24298 -37.83564 -36.45489 -34.82689 -34.54969 -33.65729 -31.71937 -29.73246 -28.58850 -27.75680 -27.43071 -25.87239 -23.56966 -23.21715 -22.21174 -21.50029 -20.99580 -20.12967 -18.55978 -18.29385 -17.37897 -17.13933 -16.82343 -16.48587 -16.26109 -16.01475 -15.89943 -15.24141 -15.08323 -14.61005 -14.35056 -14.01160 -13.89240 -13.54897 -13.41412 -13.25904 -12.99785 -12.78825 -12.72422 -12.70464 -12.57372 -12.48455 -12.31421 -12.17444 -11.94155 -11.89255 -11.82602 -11.74894 -11.56856 -11.39299 -11.21191 -10.50887 -9.64837 -9.37118 -9.09162 -8.36398 -8.15671 -5.70143 -1.07425 0.46039 0.51996 0.78285 0.86463 1.28437 1.37021 1.50425 2.42533 2.52201 3.04825 3.10153 3.11122 3.35577 3.79150 3.96065 4.04697 4.16810 4.17682 4.21825 4.30614 4.40982 4.41747 4.54003 4.55266 4.57907 4.71118 4.77339 4.84085 4.84884 4.88466 4.89237 5.01501 5.07891 5.13569 5.29902 5.35177 5.40756 5.43943 5.47939 5.51377 5.60764 5.95285 6.01184 6.18961 6.25523 6.36695 7.11802 7.64392 8.25854 8.99787 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.003812 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.492305 B = 7344.196282 C = 7729.655224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.161 3.839 3 H 0.008 0.992 4 C 0.066 3.934 5 N -0.541 5.541 6 C 0.105 3.895 7 C -0.047 4.047 8 C -0.084 4.084 9 C -0.075 4.075 10 C -0.081 4.081 11 C 0.061 3.939 12 N -0.621 5.621 13 S 0.824 5.176 14 N -0.608 5.608 15 C 0.078 3.922 16 C 0.064 3.936 17 C 0.164 3.836 18 H 0.013 0.987 19 C -0.135 4.135 20 N -0.609 5.609 21 C -0.246 4.246 22 H 0.040 0.960 23 C 0.022 3.978 24 N -0.936 5.936 25 Si 0.917 3.083 26 H -0.269 1.269 27 H -0.280 1.280 28 H -0.307 1.307 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.157 0.843 37 H 0.177 0.823 38 H 0.157 0.843 39 H 0.084 0.916 40 H 0.034 0.966 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.040 0.960 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.444 1.910 -23.287 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.055 3.945 3 H 0.025 0.975 4 C -0.063 4.063 5 N -0.266 5.266 6 C -0.021 4.021 7 C -0.055 4.055 8 C -0.109 4.109 9 C -0.099 4.099 10 C -0.105 4.105 11 C -0.098 4.098 12 N -0.473 5.473 13 S 0.872 5.128 14 N -0.459 5.459 15 C -0.081 4.081 16 C -0.066 4.066 17 C 0.059 3.941 18 H 0.031 0.969 19 C -0.193 4.193 20 N -0.336 5.336 21 C -0.376 4.376 22 H 0.058 0.942 23 C -0.177 4.177 24 N -0.578 5.578 25 Si 0.746 3.254 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.236 1.236 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.174 0.826 37 H 0.194 0.806 38 H 0.174 0.826 39 H 0.102 0.898 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.080 4.174 -22.761 24.511 hybrid contribution -0.885 -1.110 0.778 1.619 sum 7.194 3.063 -21.984 23.333 Atomic orbital electron populations 1.21588 0.94247 1.01395 1.00580 1.20707 0.93995 0.92964 0.86796 0.97461 1.22355 0.87035 0.99026 0.97873 1.61926 1.11343 1.50813 1.02477 1.20957 0.99296 0.96045 0.85849 1.19014 0.97954 0.90770 0.97714 1.21073 0.93556 1.01356 0.94898 1.21117 0.99633 0.93671 0.95480 1.20599 0.94053 0.95339 1.00533 1.21740 1.00796 0.89739 0.97514 1.72146 1.19315 1.22648 1.33221 1.78245 1.19833 1.13355 1.01404 1.72154 1.26050 1.13442 1.34260 1.21324 0.93927 0.97860 0.94947 1.22423 1.00046 0.93970 0.90120 1.20748 0.84815 0.94712 0.93834 0.96906 1.21909 1.00075 0.99661 0.97640 1.44639 1.03165 1.66196 1.19605 1.18200 1.06099 1.27369 0.85892 0.94203 1.26188 0.97438 0.97921 0.96129 1.69958 1.47973 1.40610 0.99264 0.86411 0.80091 0.82779 0.76116 1.19523 1.20531 1.23553 0.94368 0.90916 0.93246 0.90262 0.94810 0.90499 0.92102 0.82591 0.80563 0.82581 0.89817 0.94729 0.93114 0.91346 0.94094 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.59 8.19 71.98 0.59 -4.00 16 2 C 0.16 6.67 3.64 44.81 0.16 6.83 16 3 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 4 C 0.07 2.20 4.26 86.23 0.37 2.57 16 5 N -0.54 -17.80 4.77 -900.74 -4.30 -22.10 16 6 C 0.11 2.71 5.39 85.56 0.46 3.17 16 7 C -0.05 -1.12 3.72 -19.63 -0.07 -1.19 16 8 C -0.08 -1.41 8.45 21.94 0.19 -1.22 16 9 C -0.07 -0.98 9.89 21.94 0.22 -0.77 16 10 C -0.08 -1.38 10.09 22.51 0.23 -1.16 16 11 C 0.06 1.46 7.17 41.98 0.30 1.76 16 12 N -0.62 -15.08 11.44 -72.85 -0.83 -15.91 16 13 S 0.82 17.40 23.60 -56.49 -1.33 16.07 16 14 N -0.61 -16.95 11.39 -72.83 -0.83 -17.78 16 15 C 0.08 2.08 6.92 41.97 0.29 2.37 16 16 C 0.06 2.21 4.87 86.39 0.42 2.63 16 17 C 0.16 7.11 2.46 44.96 0.11 7.22 16 18 H 0.01 0.61 7.38 -2.39 -0.02 0.60 16 19 C -0.14 -5.89 7.85 71.98 0.56 -5.32 16 20 N -0.61 -28.94 2.26 -651.48 -1.47 -30.41 16 21 C -0.25 -13.48 7.28 84.03 0.61 -12.87 16 22 H 0.04 2.43 7.23 -2.91 -0.02 2.41 16 23 C 0.02 1.24 3.97 84.86 0.34 1.58 16 24 N -0.94 -56.59 13.97 21.65 0.30 -56.29 16 25 Si 0.92 47.31 24.63 68.60 1.69 49.00 16 26 H -0.27 -13.24 6.44 99.48 0.64 -12.60 16 27 H -0.28 -14.80 7.11 99.48 0.71 -14.09 16 28 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 29 H 0.04 1.62 7.83 -2.39 -0.02 1.60 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 1.94 7.38 -2.39 -0.02 1.92 16 32 H 0.08 2.41 5.94 -2.39 -0.01 2.40 16 33 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.06 1.34 7.89 -2.39 -0.02 1.32 16 36 H 0.16 1.96 7.98 -2.91 -0.02 1.94 16 37 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 38 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.08 2.56 8.11 -2.39 -0.02 2.54 16 40 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.05 2.35 7.73 -2.39 -0.02 2.33 16 42 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.04 2.00 3.30 -2.39 -0.01 1.99 16 44 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -71.10 350.90 -1.06 -72.16 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 0.94 Total: 3.67 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 4.77 Total: 1.59 kcal Atomic # 7 Polarization: -135.36 SS G_CDS: -7.13 Total: -142.49 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.69 Total: 49.00 kcal Atomic # 16 Polarization: 17.40 SS G_CDS: -1.33 Total: 16.07 kcal Total: -71.10 -1.06 -72.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878774357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.827 kcal (2) G-P(sol) polarization free energy of solvation -71.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds