Wall clock time and date at job start Tue Mar 31 2020 17:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.62636 * 2 1 4 4 C 1.53239 * 109.63243 * 239.60540 * 2 1 3 5 5 N 1.46898 * 109.36055 * 294.10992 * 4 2 1 6 6 C 1.46901 * 111.00038 * 172.75604 * 5 4 2 7 7 C 1.50697 * 109.47099 * 170.00056 * 6 5 4 8 8 C 1.35504 * 120.04674 * 259.99835 * 7 6 5 9 9 C 1.39500 * 121.58007 * 179.97438 * 8 7 6 10 10 C 1.35501 * 121.58291 * 0.02562 * 9 8 7 11 11 C 1.41767 * 119.90192 * 0.02562 * 10 9 8 12 12 N 1.32324 * 131.00893 * 179.97438 * 11 10 9 13 13 S 1.55549 * 109.42301 * 179.40441 * 12 11 10 14 14 N 1.55545 * 100.20060 * 0.43112 * 13 12 11 15 15 C 1.32330 * 109.42043 * 359.62963 * 14 13 12 16 16 C 1.46892 * 111.27083 * 296.93581 * 5 4 2 17 17 C 1.53237 * 109.36668 * 63.06659 * 16 5 4 18 18 H 1.08999 * 109.78921 * 65.98326 * 17 16 5 19 19 C 1.52991 * 109.63427 * 186.47353 * 17 16 5 20 20 N 1.47080 * 109.62482 * 120.57455 * 2 1 3 21 21 C 1.36937 * 120.88523 * 248.54892 * 20 2 1 22 22 H 1.07999 * 119.99720 * 206.12489 * 21 20 2 23 23 C 1.38805 * 119.99934 * 26.11687 * 21 20 2 24 24 N 1.31616 * 120.00149 * 16.27594 * 23 21 20 25 25 Si 1.86799 * 120.00276 * 196.27675 * 23 21 20 26 26 H 1.48500 * 109.46755 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47487 * 119.99836 * 25 23 21 28 28 H 1.48500 * 109.47561 * 240.00340 * 25 23 21 29 29 H 1.08997 * 109.47269 * 180.38856 * 1 2 3 30 30 H 1.09000 * 109.47098 * 300.39777 * 1 2 3 31 31 H 1.09003 * 109.46458 * 60.39256 * 1 2 3 32 32 H 1.09004 * 109.49007 * 54.08076 * 4 2 1 33 33 H 1.08994 * 109.49232 * 174.13507 * 4 2 1 34 34 H 1.08997 * 109.46731 * 290.00198 * 6 5 4 35 35 H 1.08998 * 109.46522 * 49.99862 * 6 5 4 36 36 H 1.07996 * 119.21194 * 359.97438 * 8 7 6 37 37 H 1.08004 * 119.20843 * 180.02562 * 9 8 7 38 38 H 1.07995 * 120.05472 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.47132 * 303.10232 * 16 5 4 40 40 H 1.09005 * 109.51303 * 183.05004 * 16 5 4 41 41 H 1.08996 * 109.47993 * 180.37873 * 19 17 16 42 42 H 1.09001 * 109.47060 * 300.38440 * 19 17 16 43 43 H 1.09007 * 109.46892 * 60.37783 * 19 17 16 44 44 H 0.97004 * 120.00671 * 184.88758 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0449 -0.7302 -1.2449 5 7 1.6753 -2.1497 -1.1646 6 6 1.9989 -2.8496 -2.4150 7 6 1.8384 -4.3346 -2.2155 8 6 2.9263 -5.1105 -1.9909 9 6 2.8146 -6.4881 -1.8015 10 6 1.6132 -7.1138 -1.8338 11 6 0.4321 -6.3645 -2.0652 12 7 -0.8341 -6.7410 -2.1411 13 16 -1.7295 -5.4957 -2.3998 14 7 -0.6443 -4.3826 -2.4536 15 6 0.5485 -4.9212 -2.2577 16 6 2.3147 -2.8026 -0.0146 17 6 1.8109 -2.1574 1.2808 18 1 0.7483 -2.3646 1.4073 19 6 2.5895 -2.7197 2.4718 20 7 2.0240 -0.7047 1.1928 21 6 2.6649 -0.0263 2.1949 22 1 3.3722 -0.5407 2.8285 23 6 2.4055 1.3223 2.3962 24 7 1.3375 1.8742 1.8605 25 14 3.5724 2.3542 3.4273 26 1 4.6889 1.5034 3.9118 27 1 4.1169 3.4610 2.6004 28 1 2.8394 2.9186 4.5889 29 1 -0.3634 -1.0276 0.0070 30 1 -0.3633 0.5200 0.8864 31 1 -0.3632 0.5078 -0.8935 32 1 1.5993 -0.2882 -2.1362 33 1 3.1297 -0.6393 -1.2973 34 1 1.3257 -2.5140 -3.2038 35 1 3.0283 -2.6301 -2.6981 36 1 3.9033 -4.6515 -1.9578 37 1 3.7073 -7.0699 -1.6248 38 1 1.5554 -8.1818 -1.6844 39 1 3.3959 -2.6832 -0.0839 40 1 2.0652 -3.8637 -0.0132 41 1 2.2246 -2.2642 3.3923 42 1 2.4492 -3.7996 2.5203 43 1 3.6495 -2.4961 2.3511 44 1 1.1931 2.8301 1.9412 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878774358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:42 Heat of formation + Delta-G solvation = 117.764080 kcal Electronic energy + Delta-G solvation = -27242.264675 eV Core-core repulsion = 23708.700586 eV Total energy + Delta-G solvation = -3533.564089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.02674 -38.59426 -36.65075 -34.99521 -33.60891 -32.50523 -31.58688 -30.16487 -27.94380 -27.53194 -26.31613 -25.60152 -23.92081 -22.66091 -22.21146 -20.64534 -20.50246 -19.17831 -18.50773 -17.54183 -16.38089 -16.14037 -15.80173 -15.28101 -15.15658 -14.66043 -14.40217 -13.96390 -13.79457 -13.26447 -13.05981 -12.95116 -12.41778 -12.32951 -12.01663 -11.84856 -11.77458 -11.64191 -11.57275 -11.36610 -11.12246 -10.88736 -10.81777 -10.81758 -10.61654 -10.50797 -10.42105 -10.37986 -9.96055 -9.83752 -9.40215 -9.15475 -8.76047 -8.46588 -8.30123 -7.63784 -6.59193 -5.67871 -3.12428 -0.15442 1.36075 1.44402 1.72473 1.78317 3.40032 3.43070 3.48797 3.49884 4.05277 4.51308 4.57058 4.76891 4.78613 4.96414 5.05523 5.15078 5.36425 5.44197 5.52459 5.67118 5.85206 5.91242 5.93429 6.01417 6.13951 6.19019 6.19830 6.24922 6.28033 6.33837 6.40684 6.43713 6.48301 6.69889 6.83791 6.92329 7.00093 7.09957 7.18811 7.30513 7.60688 7.66816 7.79249 7.92895 8.02198 8.50955 9.30466 9.92902 10.50875 11.36926 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.003582 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.897783 B = 7815.607860 C = 8326.347332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.198 3.802 3 H 0.097 0.903 4 C 0.043 3.957 5 N -0.517 5.517 6 C 0.095 3.905 7 C -0.010 4.010 8 C -0.105 4.105 9 C -0.084 4.084 10 C -0.078 4.078 11 C 0.080 3.920 12 N -0.604 5.604 13 S 0.776 5.224 14 N -0.561 5.561 15 C 0.095 3.905 16 C 0.048 3.952 17 C 0.173 3.827 18 H 0.029 0.971 19 C -0.137 4.137 20 N -0.585 5.585 21 C -0.243 4.243 22 H 0.071 0.929 23 C -0.001 4.001 24 N -0.898 5.898 25 Si 0.895 3.105 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.019 0.981 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.082 0.918 35 H 0.040 0.960 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.027 0.973 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.037 0.963 43 H 0.052 0.948 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 -16.186 -10.641 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.092 3.908 3 H 0.114 0.886 4 C -0.086 4.086 5 N -0.241 5.241 6 C -0.033 4.033 7 C -0.018 4.018 8 C -0.130 4.130 9 C -0.108 4.108 10 C -0.103 4.103 11 C -0.080 4.080 12 N -0.455 5.455 13 S 0.823 5.177 14 N -0.411 5.411 15 C -0.065 4.065 16 C -0.081 4.081 17 C 0.066 3.934 18 H 0.047 0.953 19 C -0.195 4.195 20 N -0.308 5.308 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.198 4.198 24 N -0.543 5.543 25 Si 0.725 3.275 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.219 1.219 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.045 0.955 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.262 -15.877 -10.739 19.443 hybrid contribution 3.159 0.543 0.572 3.256 sum -0.103 -15.334 -10.167 18.398 Atomic orbital electron populations 1.21926 0.97977 0.99115 1.00178 1.20409 0.92596 0.95824 0.82006 0.88551 1.22881 0.97398 0.87268 1.01068 1.62061 1.58680 1.02598 1.00780 1.21077 0.99404 0.88115 0.94675 1.19029 0.88222 0.96126 0.98388 1.20685 0.98590 0.93664 1.00105 1.20701 0.97426 0.94498 0.98218 1.20174 0.88401 0.99545 1.02206 1.21356 0.90760 0.92607 1.03271 1.72199 1.09004 1.36752 1.27524 1.78595 1.18508 0.79874 1.40695 1.72299 1.06692 1.37056 1.25085 1.21062 0.92102 0.90474 1.02850 1.22712 0.95825 0.97282 0.92300 1.20435 0.96251 0.85856 0.90896 0.95340 1.21800 1.00540 0.97859 0.99311 1.44296 1.66914 1.01034 1.18546 1.19275 1.15747 0.92695 1.09531 0.91145 1.24948 0.96548 0.98730 0.99620 1.70065 1.24610 1.10431 1.49207 0.86339 0.80691 0.80588 0.79836 1.20518 1.21825 1.21947 0.94871 0.91083 0.96159 0.92178 0.95790 0.89977 0.94192 0.84782 0.84593 0.84643 0.95494 0.92186 0.91967 0.94404 0.92861 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.97 37.16 0.33 -2.78 16 2 C 0.20 4.67 2.35 -67.49 -0.16 4.51 16 3 H 0.10 2.56 6.06 -51.93 -0.31 2.25 16 4 C 0.04 0.84 4.97 -3.70 -0.02 0.82 16 5 N -0.52 -9.38 4.28 -235.77 -1.01 -10.39 16 6 C 0.09 1.42 5.39 -4.98 -0.03 1.39 16 7 C -0.01 -0.14 3.73 -104.26 -0.39 -0.53 16 8 C -0.11 -1.15 8.43 -40.09 -0.34 -1.49 16 9 C -0.08 -0.77 9.89 -40.09 -0.40 -1.17 16 10 C -0.08 -0.84 10.09 -39.21 -0.40 -1.23 16 11 C 0.08 1.07 7.17 -83.17 -0.60 0.47 16 12 N -0.60 -7.98 11.44 25.63 0.29 -7.68 16 13 S 0.78 8.89 23.60 -107.50 -2.54 6.35 16 14 N -0.56 -8.37 11.39 25.63 0.29 -8.08 16 15 C 0.09 1.39 6.91 -83.17 -0.58 0.81 16 16 C 0.05 0.88 4.28 -3.71 -0.02 0.87 16 17 C 0.17 3.69 3.25 -67.49 -0.22 3.47 16 18 H 0.03 0.68 7.61 -51.93 -0.40 0.28 16 19 C -0.14 -2.63 7.93 37.15 0.29 -2.33 16 20 N -0.58 -14.32 2.74 -157.01 -0.43 -14.75 16 21 C -0.24 -6.45 8.75 -15.06 -0.13 -6.58 16 22 H 0.07 1.84 6.14 -52.49 -0.32 1.52 16 23 C 0.00 -0.02 4.96 -17.43 -0.09 -0.10 16 24 N -0.90 -25.27 9.71 55.49 0.54 -24.73 16 25 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H 0.03 0.77 7.07 -51.93 -0.37 0.40 16 30 H 0.07 1.88 6.92 -51.93 -0.36 1.52 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 1.11 8.11 -51.93 -0.42 0.69 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.04 0.55 7.89 -51.93 -0.41 0.14 16 36 H 0.13 1.25 7.98 -52.49 -0.42 0.83 16 37 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 1.03 5.93 -51.93 -0.31 0.72 16 41 H 0.06 1.27 7.59 -51.93 -0.39 0.88 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 1.02 7.52 -51.92 -0.39 0.63 16 44 H 0.25 6.88 8.32 -40.82 -0.34 6.54 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -30.80 355.10 -11.44 -42.25 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.20 Total: -0.92 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -2.72 Total: -3.87 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: -0.31 Total: -65.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Atomic # 16 Polarization: 8.89 SS G_CDS: -2.54 Total: 6.35 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.80 -11.44 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878774358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.012 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds