Wall clock time and date at job start Tue Mar 31 2020 17:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.62636 * 2 1 4 4 C 1.53239 * 109.63243 * 239.60540 * 2 1 3 5 5 N 1.46898 * 109.36055 * 294.10992 * 4 2 1 6 6 C 1.46901 * 111.00038 * 172.75604 * 5 4 2 7 7 C 1.50697 * 109.47099 * 170.00056 * 6 5 4 8 8 C 1.35504 * 120.04674 * 259.99835 * 7 6 5 9 9 C 1.39500 * 121.58007 * 179.97438 * 8 7 6 10 10 C 1.35501 * 121.58291 * 0.02562 * 9 8 7 11 11 C 1.41767 * 119.90192 * 0.02562 * 10 9 8 12 12 N 1.32324 * 131.00893 * 179.97438 * 11 10 9 13 13 S 1.55549 * 109.42301 * 179.40441 * 12 11 10 14 14 N 1.55545 * 100.20060 * 0.43112 * 13 12 11 15 15 C 1.32330 * 109.42043 * 359.62963 * 14 13 12 16 16 C 1.46892 * 111.27083 * 296.93581 * 5 4 2 17 17 C 1.53237 * 109.36668 * 63.06659 * 16 5 4 18 18 H 1.08999 * 109.78921 * 65.98326 * 17 16 5 19 19 C 1.52991 * 109.63427 * 186.47353 * 17 16 5 20 20 N 1.47080 * 109.62482 * 120.57455 * 2 1 3 21 21 C 1.36937 * 120.88523 * 248.54892 * 20 2 1 22 22 H 1.07999 * 119.99720 * 206.12489 * 21 20 2 23 23 C 1.38805 * 119.99934 * 26.11687 * 21 20 2 24 24 N 1.31616 * 120.00149 * 16.27594 * 23 21 20 25 25 Si 1.86799 * 120.00276 * 196.27675 * 23 21 20 26 26 H 1.48500 * 109.46755 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47487 * 119.99836 * 25 23 21 28 28 H 1.48500 * 109.47561 * 240.00340 * 25 23 21 29 29 H 1.08997 * 109.47269 * 180.38856 * 1 2 3 30 30 H 1.09000 * 109.47098 * 300.39777 * 1 2 3 31 31 H 1.09003 * 109.46458 * 60.39256 * 1 2 3 32 32 H 1.09004 * 109.49007 * 54.08076 * 4 2 1 33 33 H 1.08994 * 109.49232 * 174.13507 * 4 2 1 34 34 H 1.08997 * 109.46731 * 290.00198 * 6 5 4 35 35 H 1.08998 * 109.46522 * 49.99862 * 6 5 4 36 36 H 1.07996 * 119.21194 * 359.97438 * 8 7 6 37 37 H 1.08004 * 119.20843 * 180.02562 * 9 8 7 38 38 H 1.07995 * 120.05472 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.47132 * 303.10232 * 16 5 4 40 40 H 1.09005 * 109.51303 * 183.05004 * 16 5 4 41 41 H 1.08996 * 109.47993 * 180.37873 * 19 17 16 42 42 H 1.09001 * 109.47060 * 300.38440 * 19 17 16 43 43 H 1.09007 * 109.46892 * 60.37783 * 19 17 16 44 44 H 0.97004 * 120.00671 * 184.88758 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0449 -0.7302 -1.2449 5 7 1.6753 -2.1497 -1.1646 6 6 1.9989 -2.8496 -2.4150 7 6 1.8384 -4.3346 -2.2155 8 6 2.9263 -5.1105 -1.9909 9 6 2.8146 -6.4881 -1.8015 10 6 1.6132 -7.1138 -1.8338 11 6 0.4321 -6.3645 -2.0652 12 7 -0.8341 -6.7410 -2.1411 13 16 -1.7295 -5.4957 -2.3998 14 7 -0.6443 -4.3826 -2.4536 15 6 0.5485 -4.9212 -2.2577 16 6 2.3147 -2.8026 -0.0146 17 6 1.8109 -2.1574 1.2808 18 1 0.7483 -2.3646 1.4073 19 6 2.5895 -2.7197 2.4718 20 7 2.0240 -0.7047 1.1928 21 6 2.6649 -0.0263 2.1949 22 1 3.3722 -0.5407 2.8285 23 6 2.4055 1.3223 2.3962 24 7 1.3375 1.8742 1.8605 25 14 3.5724 2.3542 3.4273 26 1 4.6889 1.5034 3.9118 27 1 4.1169 3.4610 2.6004 28 1 2.8394 2.9186 4.5889 29 1 -0.3634 -1.0276 0.0070 30 1 -0.3633 0.5200 0.8864 31 1 -0.3632 0.5078 -0.8935 32 1 1.5993 -0.2882 -2.1362 33 1 3.1297 -0.6393 -1.2973 34 1 1.3257 -2.5140 -3.2038 35 1 3.0283 -2.6301 -2.6981 36 1 3.9033 -4.6515 -1.9578 37 1 3.7073 -7.0699 -1.6248 38 1 1.5554 -8.1818 -1.6844 39 1 3.3959 -2.6832 -0.0839 40 1 2.0652 -3.8637 -0.0132 41 1 2.2246 -2.2642 3.3923 42 1 2.4492 -3.7996 2.5203 43 1 3.6495 -2.4961 2.3511 44 1 1.1931 2.8301 1.9412 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878774358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:41 Heat of formation + Delta-G solvation = 98.539257 kcal Electronic energy + Delta-G solvation = -27243.098326 eV Core-core repulsion = 23708.700586 eV Total energy + Delta-G solvation = -3534.397740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.95767 -40.12653 -37.73031 -36.31356 -34.75776 -34.25225 -33.23017 -31.43408 -29.67268 -28.55098 -27.75194 -27.06937 -25.78073 -23.77917 -23.43543 -22.34764 -21.53217 -20.31939 -20.12049 -18.45809 -18.00049 -17.30025 -17.03271 -16.79326 -16.19907 -16.01633 -15.82283 -15.66385 -15.37948 -15.00812 -14.54929 -14.09400 -13.72163 -13.50942 -13.37746 -13.31326 -12.99554 -12.82638 -12.79502 -12.75896 -12.63546 -12.52740 -12.32115 -12.22694 -12.18863 -12.16513 -11.87560 -11.79336 -11.61909 -11.46648 -11.21207 -10.97224 -10.43584 -9.63066 -9.31719 -9.02160 -8.54897 -7.72115 -5.18944 -1.05190 0.47604 0.54577 0.80541 0.88557 1.48077 1.51223 1.59678 2.54777 2.57774 3.12313 3.19639 3.39615 3.62800 3.82017 3.99268 4.06374 4.21938 4.25979 4.33515 4.35763 4.49218 4.51812 4.61177 4.65031 4.74152 4.78796 4.86116 4.89274 4.97670 5.03408 5.09396 5.09628 5.24931 5.31964 5.37038 5.41359 5.45184 5.50240 5.54680 5.72443 5.79282 5.96992 5.99642 6.28625 6.35023 6.50262 7.27090 7.97371 8.51224 9.30227 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.003582 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.897783 B = 7815.607860 C = 8326.347332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.196 3.804 3 H 0.063 0.937 4 C 0.057 3.943 5 N -0.530 5.530 6 C 0.103 3.897 7 C -0.045 4.045 8 C -0.085 4.085 9 C -0.074 4.074 10 C -0.081 4.081 11 C 0.061 3.939 12 N -0.621 5.621 13 S 0.822 5.178 14 N -0.607 5.607 15 C 0.078 3.922 16 C 0.066 3.934 17 C 0.165 3.835 18 H 0.001 0.999 19 C -0.127 4.127 20 N -0.598 5.598 21 C -0.245 4.245 22 H 0.075 0.925 23 C -0.052 4.052 24 N -0.925 5.925 25 Si 0.955 3.045 26 H -0.269 1.269 27 H -0.294 1.294 28 H -0.300 1.300 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.156 0.844 37 H 0.178 0.822 38 H 0.157 0.843 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 -18.772 -11.161 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.081 0.919 4 C -0.072 4.072 5 N -0.255 5.255 6 C -0.024 4.024 7 C -0.052 4.052 8 C -0.110 4.110 9 C -0.098 4.098 10 C -0.105 4.105 11 C -0.097 4.097 12 N -0.472 5.472 13 S 0.870 5.130 14 N -0.458 5.458 15 C -0.081 4.081 16 C -0.063 4.063 17 C 0.059 3.941 18 H 0.019 0.981 19 C -0.185 4.185 20 N -0.321 5.321 21 C -0.376 4.376 22 H 0.092 0.908 23 C -0.247 4.247 24 N -0.572 5.572 25 Si 0.785 3.215 26 H -0.193 1.193 27 H -0.222 1.222 28 H -0.228 1.228 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.173 0.827 37 H 0.195 0.805 38 H 0.175 0.825 39 H 0.049 0.951 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.210 -18.497 -11.268 21.693 hybrid contribution 2.449 1.234 0.713 2.834 sum 1.239 -17.263 -10.555 20.272 Atomic orbital electron populations 1.21693 0.98365 0.98202 0.98969 1.20289 0.92168 0.94825 0.83761 0.91937 1.22554 0.97066 0.88388 0.99182 1.61921 1.59264 1.01823 1.02457 1.20967 0.99971 0.89008 0.92447 1.19009 0.88893 0.95446 1.01861 1.21058 0.98547 0.94389 0.97015 1.21111 0.98374 0.93896 0.96443 1.20593 0.87895 1.00612 1.01439 1.21738 0.91538 0.92547 1.03921 1.72151 1.09441 1.37627 1.28026 1.78256 1.17040 0.78524 1.39205 1.72169 1.07732 1.39049 1.26841 1.21336 0.92331 0.91228 1.03219 1.22449 0.95668 0.97598 0.90570 1.20624 0.95251 0.84446 0.93818 0.98130 1.21694 0.99940 0.99664 0.97209 1.44525 1.66801 1.02393 1.18409 1.19571 1.15440 0.92983 1.09568 0.90776 1.25618 0.97919 0.99886 1.01245 1.70231 1.26024 1.10002 1.50911 0.85391 0.79108 0.79008 0.78018 1.19303 1.22164 1.22777 0.95313 0.94631 0.94931 0.91058 0.95901 0.90958 0.92492 0.82669 0.80490 0.82515 0.95058 0.90545 0.94038 0.91089 0.92683 0.94738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.48 8.97 71.98 0.65 -4.83 16 2 C 0.20 9.44 2.35 44.96 0.11 9.54 16 3 H 0.06 3.44 6.06 -2.39 -0.01 3.43 16 4 C 0.06 2.23 4.97 86.38 0.43 2.66 16 5 N -0.53 -18.66 4.28 -899.85 -3.85 -22.51 16 6 C 0.10 2.90 5.39 85.56 0.46 3.36 16 7 C -0.04 -1.13 3.73 -19.63 -0.07 -1.20 16 8 C -0.08 -1.52 8.43 21.94 0.18 -1.33 16 9 C -0.07 -1.02 9.89 21.94 0.22 -0.80 16 10 C -0.08 -1.44 10.09 22.51 0.23 -1.21 16 11 C 0.06 1.52 7.17 41.98 0.30 1.83 16 12 N -0.62 -15.60 11.44 -72.82 -0.83 -16.43 16 13 S 0.82 18.40 23.60 -56.49 -1.33 17.07 16 14 N -0.61 -17.91 11.39 -72.83 -0.83 -18.74 16 15 C 0.08 2.17 6.91 41.97 0.29 2.46 16 16 C 0.07 2.30 4.28 86.38 0.37 2.67 16 17 C 0.16 6.96 3.25 44.96 0.15 7.11 16 18 H 0.00 0.05 7.61 -2.39 -0.02 0.03 16 19 C -0.13 -4.68 7.93 71.98 0.57 -4.11 16 20 N -0.60 -29.58 2.74 -650.65 -1.78 -31.36 16 21 C -0.25 -13.13 8.75 84.03 0.74 -12.40 16 22 H 0.07 3.85 6.14 -2.91 -0.02 3.83 16 23 C -0.05 -2.85 4.96 84.86 0.42 -2.43 16 24 N -0.92 -53.83 9.71 21.65 0.21 -53.62 16 25 Si 0.95 44.88 29.59 68.60 2.03 46.90 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 28 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 29 H 0.03 1.37 7.07 -2.39 -0.02 1.35 16 30 H 0.03 1.94 6.92 -2.39 -0.02 1.93 16 31 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 2.59 8.11 -2.38 -0.02 2.57 16 33 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.06 1.40 7.89 -2.39 -0.02 1.38 16 36 H 0.16 2.11 7.98 -2.91 -0.02 2.09 16 37 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 2.42 5.93 -2.38 -0.01 2.40 16 41 H 0.04 1.67 7.59 -2.39 -0.02 1.65 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.05 1.99 7.52 -2.38 -0.02 1.98 16 44 H 0.24 13.90 8.32 -92.71 -0.77 13.13 16 Total: -1.00 -68.78 355.10 -0.34 -69.13 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.01 Total: 8.24 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 5.03 Total: 1.32 kcal Atomic # 7 Polarization: -135.58 SS G_CDS: -7.08 Total: -142.66 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 18.40 SS G_CDS: -1.33 Total: 17.07 kcal Total: -68.78 -0.34 -69.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878774358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.666 kcal (2) G-P(sol) polarization free energy of solvation -68.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds