Wall clock time and date at job start Tue Mar 31 2020 17:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.78417 * 2 1 4 4 C 1.53427 * 109.84190 * 239.16386 * 2 1 3 5 5 C 1.52857 * 108.84677 * 177.19949 * 4 2 1 6 6 H 1.08995 * 109.13578 * 291.13854 * 5 4 2 7 7 C 1.50696 * 109.30531 * 171.64787 * 5 4 2 8 8 O 1.20833 * 119.99595 * 358.96940 * 7 5 4 9 9 O 1.34224 * 120.00302 * 178.96412 * 7 5 4 10 10 C 1.45206 * 117.00077 * 180.02562 * 9 7 5 11 11 C 1.50699 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47324 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00339 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99769 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46692 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46740 * 119.99592 * 19 17 15 22 22 H 1.48497 * 109.47025 * 239.99950 * 19 17 15 23 23 C 1.50601 * 110.48277 * 51.34169 * 5 4 2 24 24 C 1.38500 * 118.93402 * 159.37143 * 23 5 4 25 25 C 1.38122 * 120.30964 * 179.82629 * 24 23 5 26 26 C 1.38311 * 120.15853 * 0.02562 * 25 24 23 27 27 C 1.38021 * 119.90995 * 0.04553 * 26 25 24 28 28 C 1.38601 * 121.50064 * 339.34076 * 23 5 4 29 29 N 1.39916 * 120.84300 * 0.48181 * 28 23 5 30 30 H 1.08992 * 109.47029 * 299.20026 * 1 2 3 31 31 H 1.08997 * 109.46980 * 59.20731 * 1 2 3 32 32 H 1.08997 * 109.46828 * 179.19901 * 1 2 3 33 33 H 1.09004 * 109.58133 * 57.39070 * 4 2 1 34 34 H 1.09005 * 109.57837 * 297.00857 * 4 2 1 35 35 H 1.09000 * 109.47070 * 300.00162 * 10 9 7 36 36 H 1.09001 * 109.46626 * 60.00180 * 10 9 7 37 37 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 38 38 H 1.09004 * 109.46923 * 300.00119 * 14 13 11 39 39 H 1.09004 * 109.47042 * 59.99705 * 14 13 11 40 40 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 41 41 H 1.08003 * 119.84477 * 359.84743 * 24 23 5 42 42 H 1.07998 * 119.92051 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.04352 * 180.02562 * 26 25 24 44 44 H 1.08007 * 119.98067 * 180.02562 * 27 26 25 45 45 H 0.97003 * 120.53963 * 166.49970 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0508 -0.7398 -1.2392 5 6 3.5775 -0.6658 -1.2531 6 1 3.8837 0.3624 -1.4460 7 6 4.1096 -1.5572 -2.3454 8 8 3.3458 -2.1994 -3.0268 9 8 5.4318 -1.6377 -2.5616 10 6 5.8728 -2.5158 -3.6308 11 6 7.3764 -2.4779 -3.7240 12 8 8.0136 -1.7794 -2.9645 13 7 8.0129 -3.2196 -4.6520 14 6 9.4747 -3.1833 -4.7423 15 6 9.9323 -4.0944 -5.8519 16 1 9.2069 -4.6458 -6.4317 17 6 11.2772 -4.2250 -6.1264 18 7 12.1606 -3.5539 -5.4201 19 14 11.8444 -5.3550 -7.5015 20 1 10.6633 -5.9908 -8.1386 21 1 12.5894 -4.5657 -8.5151 22 1 12.7315 -6.4070 -6.9433 23 6 4.1389 -1.1121 0.0712 24 6 5.4584 -1.5284 0.1335 25 6 6.0034 -1.9403 1.3340 26 6 5.2335 -1.9400 2.4831 27 6 3.9173 -1.5281 2.4296 28 6 3.3661 -1.1140 1.2217 29 7 2.0276 -0.7078 1.1875 30 1 -0.3633 0.5013 0.8970 31 1 -0.3633 0.5261 -0.8828 32 1 -0.3633 -1.0276 -0.0144 33 1 1.6542 -0.2694 -2.1390 34 1 1.7361 -1.7827 -1.2011 35 1 5.5476 -3.5349 -3.4214 36 1 5.4413 -2.1835 -4.5750 37 1 7.5032 -3.7780 -5.2597 38 1 9.8006 -2.1642 -4.9507 39 1 9.9054 -3.5165 -3.7980 40 1 13.1067 -3.6454 -5.6134 41 1 6.0641 -1.5307 -0.7607 42 1 7.0331 -2.2632 1.3755 43 1 5.6617 -2.2620 3.4209 44 1 3.3152 -1.5271 3.3262 45 1 1.4379 -0.8902 1.9357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884636891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:42 Heat of formation + Delta-G solvation = -99.306764 kcal Electronic energy + Delta-G solvation = -27960.240034 eV Core-core repulsion = 23942.217425 eV Total energy + Delta-G solvation = -4018.022609 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.20249 -39.79099 -38.67936 -37.16866 -36.28921 -34.25198 -33.84527 -32.41270 -32.05231 -29.74587 -29.26619 -27.73635 -26.84115 -25.15295 -22.94232 -22.60504 -22.32386 -21.12642 -19.94970 -19.73671 -17.97191 -17.63243 -17.36500 -16.72676 -16.44328 -16.28663 -15.80293 -15.42787 -15.11028 -14.74304 -14.65306 -14.24959 -14.07753 -14.01828 -13.59629 -13.24908 -13.08216 -12.82472 -12.77154 -12.58826 -12.47786 -12.25441 -12.00811 -11.79663 -11.76873 -11.47649 -11.14840 -10.99325 -10.95807 -10.91397 -10.62821 -10.58676 -10.34981 -10.15087 -9.42741 -9.18380 -8.80757 -8.79169 -7.99240 -7.56312 -6.20178 -4.27440 1.28303 1.55979 2.10710 2.39546 3.13108 3.17346 3.22110 3.29356 3.32349 3.76919 3.97615 4.20818 4.32159 4.39876 4.48778 4.64610 4.83397 4.90336 4.94830 5.01095 5.16050 5.17540 5.20239 5.22047 5.24349 5.34019 5.37898 5.43390 5.46177 5.57708 5.62110 5.75390 5.88531 6.06785 6.21922 6.32264 6.49411 6.68836 6.77987 7.17225 7.22146 7.30339 7.45434 7.50680 7.58189 7.66208 7.91482 8.49498 8.70678 8.95772 9.39006 10.89967 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021389 B = 0.002310 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.761948 B =12116.050087 C =13113.671807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.070 0.930 4 C -0.118 4.118 5 C -0.025 4.025 6 H 0.115 0.885 7 C 0.473 3.527 8 O -0.507 6.507 9 O -0.324 6.324 10 C 0.044 3.956 11 C 0.500 3.500 12 O -0.533 6.533 13 N -0.707 5.707 14 C 0.251 3.749 15 C -0.544 4.544 16 H 0.065 0.935 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.164 4.164 24 C -0.069 4.069 25 C -0.169 4.169 26 C -0.072 4.072 27 C -0.197 4.197 28 C 0.226 3.774 29 N -0.750 5.750 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.393 0.607 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.266 0.734 41 H 0.152 0.848 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.611 6.393 13.247 27.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.088 0.912 4 C -0.157 4.157 5 C -0.044 4.044 6 H 0.133 0.867 7 C 0.315 3.685 8 O -0.395 6.395 9 O -0.239 6.239 10 C -0.033 4.033 11 C 0.283 3.717 12 O -0.411 6.411 13 N -0.357 5.357 14 C 0.131 3.869 15 C -0.583 4.583 16 H 0.083 0.917 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.169 4.169 24 C -0.087 4.087 25 C -0.188 4.188 26 C -0.091 4.091 27 C -0.220 4.220 28 C 0.124 3.876 29 N -0.383 5.383 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.226 0.774 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.169 0.831 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -23.170 6.818 13.410 27.626 hybrid contribution -0.013 -1.073 -0.877 1.386 sum -23.184 5.745 12.533 26.974 Atomic orbital electron populations 1.21984 0.93589 1.03017 1.02937 1.21072 0.94330 0.95278 0.84693 0.91189 1.21880 0.92020 1.03180 0.98579 1.19752 0.96011 0.99234 0.89412 0.86733 1.23532 0.80671 0.80748 0.83517 1.90656 1.58277 1.43013 1.47528 1.86576 1.24675 1.61725 1.50933 1.22915 0.94844 0.95108 0.90480 1.19873 0.87811 0.81666 0.82373 1.90709 1.67607 1.40730 1.42026 1.46367 1.10918 1.44590 1.33793 1.19178 0.72225 0.97893 0.97604 1.21242 0.92546 1.27187 1.17298 0.91736 1.24955 0.96410 0.95927 0.96732 1.69980 1.01905 1.40776 1.39497 0.86340 0.78795 0.80251 0.81409 1.19614 1.20768 1.20766 1.18762 0.95401 1.11041 0.91711 1.21715 0.93558 0.93705 0.99727 1.20995 1.00601 1.04658 0.92591 1.20967 0.93262 0.96581 0.98255 1.20587 0.96526 1.09119 0.95733 1.17430 0.84222 0.93320 0.92647 1.44859 1.08157 1.64952 1.20359 0.91865 0.90705 0.91726 0.89608 0.89797 0.88526 0.88490 0.77447 0.95245 0.95235 0.92425 0.83073 0.85910 0.86152 0.86327 0.76439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 9.41 37.16 0.35 -0.39 16 2 C 0.15 1.05 3.53 -67.48 -0.24 0.81 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.12 -1.05 4.11 -26.58 -0.11 -1.16 16 5 C -0.03 -0.28 2.77 -93.05 -0.26 -0.54 16 6 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 7 C 0.47 6.54 7.01 36.00 0.25 6.79 16 8 O -0.51 -7.71 15.58 -18.76 -0.29 -8.00 16 9 O -0.32 -5.02 6.79 -45.89 -0.31 -5.33 16 10 C 0.04 0.66 5.94 36.01 0.21 0.88 16 11 C 0.50 9.84 7.91 -10.99 -0.09 9.75 16 12 O -0.53 -12.65 16.50 -14.11 -0.23 -12.89 16 13 N -0.71 -14.47 5.55 -61.47 -0.34 -14.81 16 14 C 0.25 6.52 5.43 -5.20 -0.03 6.49 16 15 C -0.54 -14.52 9.28 -34.44 -0.32 -14.84 16 16 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.88 -25.74 13.29 55.43 0.74 -25.01 16 19 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.16 -2.02 5.47 -104.44 -0.57 -2.59 16 24 C -0.07 -0.96 9.04 -39.53 -0.36 -1.32 16 25 C -0.17 -2.16 10.04 -39.60 -0.40 -2.56 16 26 C -0.07 -0.78 10.05 -39.63 -0.40 -1.17 16 27 C -0.20 -1.99 9.88 -39.35 -0.39 -2.38 16 28 C 0.23 2.42 6.47 -83.72 -0.54 1.87 16 29 N -0.75 -5.94 5.59 -51.65 -0.29 -6.23 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.88 7.81 -51.93 -0.41 0.48 16 35 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 36 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 37 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.15 2.40 5.14 -52.48 -0.27 2.13 16 42 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 44 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 45 H 0.40 2.39 8.60 -40.82 -0.35 2.04 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -33.30 377.30 -9.44 -42.73 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.40 Total: 6.95 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -2.98 Total: 1.28 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.11 Total: -46.05 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.84 Total: -26.22 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.30 -9.44 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884636891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.573 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds