Wall clock time and date at job start Tue Mar 31 2020 18:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35905 * 117.00170 * 2 1 4 4 C 1.38727 * 120.05687 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.94171 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05697 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94307 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47264 * 90.00563 * 7 6 5 9 9 C 1.34777 * 120.00199 * 180.02562 * 8 7 6 10 10 O 1.21533 * 119.99911 * 359.97438 * 9 8 7 11 11 C 1.47650 * 119.99837 * 180.02562 * 9 8 7 12 12 C 1.34207 * 119.99770 * 180.02562 * 11 9 8 13 13 C 1.47644 * 119.99740 * 180.27332 * 12 11 9 14 14 O 1.21533 * 120.00222 * 359.71857 * 13 12 11 15 15 N 1.34783 * 119.99883 * 179.71864 * 13 12 11 16 16 C 1.46498 * 119.99903 * 179.97438 * 15 13 12 17 17 H 1.08995 * 109.47033 * 35.00450 * 16 15 13 18 18 C 1.52997 * 109.47426 * 275.00350 * 16 15 13 19 19 C 1.50701 * 109.46948 * 155.00118 * 16 15 13 20 20 H 1.08001 * 119.99644 * 0.02562 * 19 16 15 21 21 C 1.37875 * 120.00190 * 179.97438 * 19 16 15 22 22 N 1.31515 * 119.99669 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00189 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.46850 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.46958 * 120.00231 * 23 21 19 26 26 H 1.48503 * 109.46944 * 240.00418 * 23 21 19 27 27 C 1.38270 * 120.11092 * 0.25947 * 6 5 4 28 28 C 1.38146 * 120.05255 * 359.44732 * 27 6 5 29 29 H 1.09000 * 109.47502 * 299.99805 * 1 2 3 30 30 H 1.09005 * 109.47205 * 59.99821 * 1 2 3 31 31 H 1.09004 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.03310 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.97480 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.47477 * 330.00244 * 7 6 5 35 35 H 1.09005 * 109.46995 * 209.99865 * 7 6 5 36 36 H 0.97000 * 119.99478 * 359.97438 * 8 7 6 37 37 H 1.08001 * 119.99920 * 359.97438 * 11 9 8 38 38 H 1.08002 * 119.99779 * 359.97438 * 12 11 9 39 39 H 0.97000 * 119.99715 * 0.02562 * 15 13 12 40 40 H 1.08994 * 109.47214 * 180.02562 * 18 16 15 41 41 H 1.09004 * 109.46812 * 300.00029 * 18 16 15 42 42 H 1.09004 * 109.47023 * 59.99864 * 18 16 15 43 43 H 0.97004 * 119.99970 * 179.97438 * 22 21 19 44 44 H 1.08002 * 119.96644 * 179.70367 * 27 6 5 45 45 H 1.08000 * 120.02527 * 180.25333 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 7 4.2081 5.4547 -1.3780 9 6 4.8102 6.6353 -1.6233 10 8 5.1685 7.3383 -0.6989 11 6 5.0335 7.0751 -3.0150 12 6 5.6335 8.2504 -3.2592 13 6 5.8513 8.6929 -4.6508 14 8 5.4919 7.9905 -5.5752 15 7 6.4488 9.8759 -4.8961 16 6 6.6655 10.3148 -6.2769 17 1 5.8342 9.9822 -6.8985 18 6 7.9695 9.7132 -6.8047 19 6 6.7532 11.8187 -6.3181 20 1 6.6576 12.3903 -5.4068 21 6 6.9566 12.4647 -7.5190 22 7 7.0735 11.7685 -8.6287 23 14 7.0660 14.3288 -7.5700 24 1 6.9032 14.8719 -6.1975 25 1 8.3895 14.7324 -8.1090 26 1 5.9914 14.8640 -8.4442 27 6 1.9210 3.6048 0.0070 28 6 1.2915 2.3751 0.0004 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0209 0.3800 0.0005 33 1 5.1345 2.5752 0.0011 34 1 4.9438 4.9380 0.5168 35 1 3.3578 5.7460 0.5169 36 1 3.9224 4.8934 -2.1158 37 1 4.7147 6.4505 -3.8364 38 1 5.9527 8.8747 -2.4377 39 1 6.7360 10.4364 -4.1583 40 1 8.1309 10.0400 -7.8318 41 1 8.8008 10.0458 -6.1830 42 1 7.9060 8.6254 -6.7748 43 1 7.2162 12.2231 -9.4737 44 1 1.3342 4.5115 0.0123 45 1 0.2129 2.3201 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900433393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:31 Heat of formation + Delta-G solvation = -71.779372 kcal Electronic energy + Delta-G solvation = -26031.836995 eV Core-core repulsion = 22015.008063 eV Total energy + Delta-G solvation = -4016.828932 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.69429 -39.82686 -38.86191 -38.10209 -34.99434 -34.88210 -32.80560 -32.35976 -31.62282 -31.08752 -29.02802 -28.14535 -26.30996 -25.28045 -24.04469 -23.13059 -21.70026 -21.22579 -20.00206 -19.27310 -18.65472 -17.81747 -17.05054 -16.78110 -16.28707 -16.16267 -15.77420 -15.28641 -15.27684 -15.19109 -14.61886 -14.30332 -14.25853 -14.05675 -13.94039 -13.83827 -13.16861 -13.03845 -12.80402 -12.46249 -12.43635 -12.09863 -11.94060 -11.74611 -11.57219 -11.29111 -11.11039 -10.99083 -10.78602 -10.32916 -10.25478 -10.17880 -9.69244 -9.48709 -9.27583 -9.25877 -9.06065 -8.64943 -8.57741 -7.97189 -6.14046 -4.23326 0.81966 0.87862 0.97040 2.76572 2.90853 3.04182 3.23704 3.31553 3.34548 3.41859 3.88209 4.06875 4.26695 4.30201 4.36800 4.40042 4.57500 4.64119 4.83617 4.86024 4.88151 4.96410 5.11702 5.18101 5.18779 5.27737 5.40119 5.51185 5.56387 5.75121 5.85013 6.06538 6.13507 6.14071 6.25814 6.31272 6.80500 6.87617 6.93832 7.11679 7.30204 7.38442 7.52595 7.67418 7.88347 8.04634 8.12065 8.59005 8.74113 9.02453 9.44071 10.92053 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028090 B = 0.001540 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.571093 B =18177.193014 C =18457.572318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.134 3.866 4 C -0.154 4.154 5 C -0.059 4.059 6 C -0.147 4.147 7 C 0.166 3.834 8 N -0.723 5.723 9 C 0.548 3.452 10 O -0.539 6.539 11 C -0.156 4.156 12 C -0.097 4.097 13 C 0.523 3.477 14 O -0.550 6.550 15 N -0.695 5.695 16 C 0.261 3.739 17 H 0.051 0.949 18 C -0.147 4.147 19 C -0.534 4.534 20 H 0.063 0.937 21 C 0.066 3.934 22 N -0.883 5.883 23 Si 0.903 3.097 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.058 4.058 28 C -0.210 4.210 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.405 0.595 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.393 0.607 40 H 0.091 0.909 41 H 0.028 0.972 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.128 0.872 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.162 -21.528 19.222 30.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.088 3.912 4 C -0.172 4.172 5 C -0.077 4.077 6 C -0.148 4.148 7 C 0.043 3.957 8 N -0.375 5.375 9 C 0.336 3.664 10 O -0.417 6.417 11 C -0.178 4.178 12 C -0.120 4.120 13 C 0.308 3.692 14 O -0.430 6.430 15 N -0.342 5.342 16 C 0.160 3.840 17 H 0.069 0.931 18 C -0.206 4.206 19 C -0.573 4.573 20 H 0.081 0.919 21 C -0.137 4.137 22 N -0.521 5.521 23 Si 0.730 3.270 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.077 4.077 28 C -0.229 4.229 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.240 0.760 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.225 0.775 40 H 0.110 0.890 41 H 0.047 0.953 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.146 0.854 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.038 -21.651 19.006 30.852 hybrid contribution -0.243 1.065 -0.080 1.095 sum -11.281 -20.586 18.927 30.154 Atomic orbital electron populations 1.23094 0.78105 1.04153 1.01533 1.86084 1.21638 1.26932 1.88443 1.19129 0.92459 0.84229 0.95370 1.20458 0.91379 0.98791 1.06586 1.20950 1.00128 0.90811 0.95846 1.19786 0.93730 0.94717 1.06520 1.20115 1.00322 0.91777 0.83491 1.45979 1.61646 1.21195 1.08704 1.18710 0.77304 0.80805 0.89563 1.90776 1.50706 1.54169 1.46073 1.23080 1.01054 0.98377 0.95312 1.23678 0.94548 0.96154 0.97588 1.18524 0.79613 0.82820 0.88264 1.90735 1.52001 1.54625 1.45660 1.46521 1.57261 1.18432 1.11956 1.18834 0.95040 0.93845 0.76310 0.93119 1.22080 0.98018 0.96454 1.04038 1.21255 1.51318 0.90442 0.94253 0.91879 1.24889 0.94630 0.98853 0.95333 1.69912 1.48347 1.35349 0.98478 0.86372 0.77708 0.84706 0.78201 1.19684 1.20855 1.20874 1.20920 0.93816 0.97322 0.95609 1.21257 1.00243 0.92228 1.09178 0.92518 0.92430 0.88094 0.84919 0.84905 0.90465 0.90544 0.76037 0.84053 0.84422 0.77455 0.89015 0.95328 0.96561 0.92596 0.85367 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.43 10.50 -19.44 -0.20 -2.63 16 3 C 0.13 1.05 6.69 -39.22 -0.26 0.79 16 4 C -0.15 -1.14 9.99 -39.43 -0.39 -1.54 16 5 C -0.06 -0.41 9.69 -39.60 -0.38 -0.80 16 6 C -0.15 -1.07 5.25 -104.60 -0.55 -1.62 16 7 C 0.17 1.38 5.80 -5.19 -0.03 1.35 16 8 N -0.72 -6.83 5.55 -62.50 -0.35 -7.17 16 9 C 0.55 7.06 7.79 -12.42 -0.10 6.96 16 10 O -0.54 -8.61 16.25 5.34 0.09 -8.53 16 11 C -0.16 -2.13 9.60 -37.16 -0.36 -2.49 16 12 C -0.10 -1.51 9.60 -37.16 -0.36 -1.86 16 13 C 0.52 10.44 7.75 -12.42 -0.10 10.34 16 14 O -0.55 -12.88 15.91 5.34 0.08 -12.80 16 15 N -0.69 -14.52 5.07 -55.95 -0.28 -14.81 16 16 C 0.26 6.64 2.56 -69.08 -0.18 6.46 16 17 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 18 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 19 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 21 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -24.77 11.32 55.43 0.63 -24.14 16 23 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C -0.06 -0.40 9.69 -39.60 -0.38 -0.79 16 28 C -0.21 -1.44 9.04 -39.43 -0.36 -1.79 16 29 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 30 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 31 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 35 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.40 3.09 8.45 -40.82 -0.34 2.75 16 37 H 0.14 1.84 7.53 -52.49 -0.39 1.45 16 38 H 0.14 1.95 7.53 -52.49 -0.39 1.55 16 39 H 0.39 7.10 8.53 -40.82 -0.35 6.75 16 40 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.13 0.64 6.30 -52.49 -0.33 0.31 16 LS Contribution 390.09 15.07 5.88 5.88 Total: -1.00 -33.40 390.09 -7.91 -41.32 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.24 Total: 7.23 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.50 Total: 0.06 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.00 Total: -46.12 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.03 Total: -23.95 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.40 -7.91 -41.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900433393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.463 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds