Wall clock time and date at job start Tue Mar 31 2020 18:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35905 * 117.00170 * 2 1 4 4 C 1.38727 * 120.05687 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.94171 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05697 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94307 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47264 * 90.00563 * 7 6 5 9 9 C 1.34777 * 120.00199 * 180.02562 * 8 7 6 10 10 O 1.21533 * 119.99911 * 359.97438 * 9 8 7 11 11 C 1.47650 * 119.99837 * 180.02562 * 9 8 7 12 12 C 1.34207 * 119.99770 * 180.02562 * 11 9 8 13 13 C 1.47644 * 119.99740 * 180.27332 * 12 11 9 14 14 O 1.21533 * 120.00222 * 359.71857 * 13 12 11 15 15 N 1.34783 * 119.99883 * 179.71864 * 13 12 11 16 16 C 1.46498 * 119.99903 * 179.97438 * 15 13 12 17 17 H 1.08995 * 109.47033 * 35.00450 * 16 15 13 18 18 C 1.52997 * 109.47426 * 275.00350 * 16 15 13 19 19 C 1.50701 * 109.46948 * 155.00118 * 16 15 13 20 20 H 1.08001 * 119.99644 * 0.02562 * 19 16 15 21 21 C 1.37875 * 120.00190 * 179.97438 * 19 16 15 22 22 N 1.31515 * 119.99669 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00189 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.46850 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.46958 * 120.00231 * 23 21 19 26 26 H 1.48503 * 109.46944 * 240.00418 * 23 21 19 27 27 C 1.38270 * 120.11092 * 0.25947 * 6 5 4 28 28 C 1.38146 * 120.05255 * 359.44732 * 27 6 5 29 29 H 1.09000 * 109.47502 * 299.99805 * 1 2 3 30 30 H 1.09005 * 109.47205 * 59.99821 * 1 2 3 31 31 H 1.09004 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.03310 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.97480 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.47477 * 330.00244 * 7 6 5 35 35 H 1.09005 * 109.46995 * 209.99865 * 7 6 5 36 36 H 0.97000 * 119.99478 * 359.97438 * 8 7 6 37 37 H 1.08001 * 119.99920 * 359.97438 * 11 9 8 38 38 H 1.08002 * 119.99779 * 359.97438 * 12 11 9 39 39 H 0.97000 * 119.99715 * 0.02562 * 15 13 12 40 40 H 1.08994 * 109.47214 * 180.02562 * 18 16 15 41 41 H 1.09004 * 109.46812 * 300.00029 * 18 16 15 42 42 H 1.09004 * 109.47023 * 59.99864 * 18 16 15 43 43 H 0.97004 * 119.99970 * 179.97438 * 22 21 19 44 44 H 1.08002 * 119.96644 * 179.70367 * 27 6 5 45 45 H 1.08000 * 120.02527 * 180.25333 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 7 4.2081 5.4547 -1.3780 9 6 4.8102 6.6353 -1.6233 10 8 5.1685 7.3383 -0.6989 11 6 5.0335 7.0751 -3.0150 12 6 5.6335 8.2504 -3.2592 13 6 5.8513 8.6929 -4.6508 14 8 5.4919 7.9905 -5.5752 15 7 6.4488 9.8759 -4.8961 16 6 6.6655 10.3148 -6.2769 17 1 5.8342 9.9822 -6.8985 18 6 7.9695 9.7132 -6.8047 19 6 6.7532 11.8187 -6.3181 20 1 6.6576 12.3903 -5.4068 21 6 6.9566 12.4647 -7.5190 22 7 7.0735 11.7685 -8.6287 23 14 7.0660 14.3288 -7.5700 24 1 6.9032 14.8719 -6.1975 25 1 8.3895 14.7324 -8.1090 26 1 5.9914 14.8640 -8.4442 27 6 1.9210 3.6048 0.0070 28 6 1.2915 2.3751 0.0004 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0209 0.3800 0.0005 33 1 5.1345 2.5752 0.0011 34 1 4.9438 4.9380 0.5168 35 1 3.3578 5.7460 0.5169 36 1 3.9224 4.8934 -2.1158 37 1 4.7147 6.4505 -3.8364 38 1 5.9527 8.8747 -2.4377 39 1 6.7360 10.4364 -4.1583 40 1 8.1309 10.0400 -7.8318 41 1 8.8008 10.0458 -6.1830 42 1 7.9060 8.6254 -6.7748 43 1 7.2162 12.2231 -9.4737 44 1 1.3342 4.5115 0.0123 45 1 0.2129 2.3201 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900433393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:30 Heat of formation + Delta-G solvation = -94.812461 kcal Electronic energy + Delta-G solvation = -26032.835785 eV Core-core repulsion = 22015.008063 eV Total energy + Delta-G solvation = -4017.827721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29045 -40.88736 -40.36766 -38.69238 -36.81730 -35.78390 -34.38101 -33.99141 -32.15474 -31.77564 -30.86600 -28.60007 -27.36349 -27.07600 -25.23834 -23.64628 -22.90421 -22.15118 -21.49838 -20.71019 -19.14709 -19.14275 -18.47422 -17.46636 -17.30910 -17.21594 -16.93605 -16.64988 -16.19651 -16.04025 -15.98397 -15.72158 -15.30334 -14.91385 -14.77695 -14.66411 -14.45206 -14.42024 -13.73167 -13.56744 -13.51159 -13.32862 -12.99476 -12.89484 -12.82914 -12.74291 -12.51998 -12.28291 -12.12179 -12.02544 -11.76392 -11.29591 -11.10953 -10.93759 -10.92376 -10.60569 -10.16630 -9.99234 -9.79011 -9.19623 -8.17911 -6.35112 -0.25840 0.26157 0.36042 1.45178 1.46440 1.58429 1.84435 1.99108 2.35499 2.37743 2.45557 2.62532 2.87647 3.13006 3.65269 3.72923 3.80206 3.93186 4.05922 4.11323 4.18961 4.36716 4.38510 4.39814 4.58591 4.69059 4.74318 4.75070 4.76080 4.89387 4.93342 5.06112 5.07164 5.11152 5.22700 5.31367 5.34292 5.42049 5.58258 5.59236 5.68130 5.75727 5.88741 6.08736 6.39834 6.43387 6.71752 6.87679 7.08157 7.29699 7.45575 8.88696 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028090 B = 0.001540 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.571093 B =18177.193014 C =18457.572318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.122 3.878 4 C -0.167 4.167 5 C -0.060 4.060 6 C -0.151 4.151 7 C 0.168 3.832 8 N -0.704 5.704 9 C 0.551 3.449 10 O -0.569 6.569 11 C -0.126 4.126 12 C -0.110 4.110 13 C 0.524 3.476 14 O -0.591 6.591 15 N -0.693 5.693 16 C 0.266 3.734 17 H 0.005 0.995 18 C -0.134 4.134 19 C -0.548 4.548 20 H 0.074 0.926 21 C 0.016 3.984 22 N -0.916 5.916 23 Si 0.973 3.027 24 H -0.261 1.261 25 H -0.278 1.278 26 H -0.283 1.283 27 C -0.061 4.061 28 C -0.214 4.214 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.416 0.584 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.408 0.592 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.015 0.985 43 H 0.266 0.734 44 H 0.140 0.860 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.786 -21.550 20.920 32.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.076 3.924 4 C -0.185 4.185 5 C -0.078 4.078 6 C -0.152 4.152 7 C 0.046 3.954 8 N -0.356 5.356 9 C 0.339 3.661 10 O -0.449 6.449 11 C -0.149 4.149 12 C -0.133 4.133 13 C 0.312 3.688 14 O -0.474 6.474 15 N -0.341 5.341 16 C 0.163 3.837 17 H 0.022 0.978 18 C -0.193 4.193 19 C -0.586 4.586 20 H 0.092 0.908 21 C -0.185 4.185 22 N -0.555 5.555 23 Si 0.797 3.203 24 H -0.185 1.185 25 H -0.204 1.204 26 H -0.209 1.209 27 C -0.080 4.080 28 C -0.232 4.232 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.156 0.844 33 H 0.162 0.838 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.252 0.748 37 H 0.167 0.833 38 H 0.173 0.827 39 H 0.243 0.757 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.034 0.966 43 H 0.075 0.925 44 H 0.158 0.842 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.680 -21.706 20.743 32.215 hybrid contribution -0.155 0.885 -0.571 1.065 sum -11.835 -20.821 20.171 31.312 Atomic orbital electron populations 1.23343 0.76440 1.05559 1.02306 1.86059 1.23484 1.27069 1.88434 1.19357 0.92842 0.84717 0.95475 1.20646 0.91676 0.99271 1.06944 1.21094 1.00786 0.90572 0.95363 1.19698 0.93940 0.94129 1.07390 1.20160 1.00509 0.92310 0.82448 1.45916 1.59784 1.19969 1.09909 1.18499 0.77581 0.81494 0.88560 1.90774 1.52239 1.55306 1.46603 1.23266 0.98135 0.97253 0.96246 1.23328 0.97330 0.97652 0.94980 1.19103 0.78133 0.81807 0.89738 1.90710 1.53525 1.55623 1.47496 1.46260 1.57871 1.19283 1.10706 1.18454 0.93420 0.93779 0.78025 0.97755 1.21905 0.98301 0.96254 1.02870 1.21573 1.51200 0.90998 0.94827 0.90836 1.25780 0.94146 1.03607 0.94929 1.70052 1.49043 1.37289 0.99083 0.85284 0.77569 0.78850 0.78550 1.18487 1.20409 1.20925 1.21107 0.93815 0.97900 0.95137 1.21462 1.01195 0.91837 1.08733 0.91575 0.91760 0.86520 0.84378 0.83774 0.90426 0.90491 0.74762 0.83310 0.82705 0.75667 0.91298 0.94033 0.96605 0.92492 0.84176 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.34 -4.81 10.50 -92.48 -0.97 -5.78 16 3 C 0.12 1.77 6.69 22.50 0.15 1.92 16 4 C -0.17 -2.32 9.99 22.37 0.22 -2.10 16 5 C -0.06 -0.75 9.69 22.25 0.22 -0.53 16 6 C -0.15 -1.94 5.25 -19.85 -0.10 -2.04 16 7 C 0.17 2.48 5.80 85.63 0.50 2.98 16 8 N -0.70 -11.78 5.55 -469.94 -2.61 -14.39 16 9 C 0.55 13.11 7.79 86.73 0.68 13.79 16 10 O -0.57 -17.17 16.25 -3.82 -0.06 -17.24 16 11 C -0.13 -3.25 9.60 23.84 0.23 -3.02 16 12 C -0.11 -3.31 9.60 23.84 0.23 -3.08 16 13 C 0.52 20.97 7.75 86.73 0.67 21.64 16 14 O -0.59 -28.16 15.91 -3.82 -0.06 -28.22 16 15 N -0.69 -29.02 5.07 -449.22 -2.28 -31.29 16 16 C 0.27 13.82 2.56 44.24 0.11 13.93 16 17 H 0.00 0.28 7.58 -2.39 -0.02 0.26 16 18 C -0.13 -6.80 9.26 71.98 0.67 -6.13 16 19 C -0.55 -28.98 8.73 25.60 0.22 -28.76 16 20 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 21 C 0.02 0.83 5.30 84.65 0.45 1.28 16 22 N -0.92 -52.24 11.32 21.45 0.24 -52.00 16 23 Si 0.97 41.95 29.54 68.60 2.03 43.98 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 25 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 27 C -0.06 -0.73 9.69 22.26 0.22 -0.51 16 28 C -0.21 -2.56 9.04 22.37 0.20 -2.36 16 29 H 0.07 0.30 7.66 -2.39 -0.02 0.28 16 30 H 0.06 0.33 7.66 -2.38 -0.02 0.31 16 31 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 35 H 0.08 1.18 8.08 -2.38 -0.02 1.16 16 36 H 0.42 5.36 8.45 -92.71 -0.78 4.58 16 37 H 0.15 3.64 7.53 -2.91 -0.02 3.61 16 38 H 0.16 4.12 7.53 -2.91 -0.02 4.10 16 39 H 0.41 14.43 8.53 -92.71 -0.79 13.64 16 40 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 41 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.01 0.74 8.14 -2.39 -0.02 0.73 16 43 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 45 H 0.15 1.15 6.30 -2.91 -0.02 1.13 16 Total: -1.00 -72.32 390.09 1.52 -70.80 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -0.54 Total: 25.91 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 5.77 Total: 8.23 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -4.64 Total: -97.68 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -1.09 Total: -51.24 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -72.32 1.52 -70.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900433393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.012 kcal (2) G-P(sol) polarization free energy of solvation -72.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds