Wall clock time and date at job start Tue Mar 31 2020 18:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99775 * 2 1 4 4 C 1.38737 * 120.05198 * 179.97438 * 3 2 1 5 5 C 1.38141 * 119.94062 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05718 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94660 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.46829 * 90.00212 * 7 6 5 9 9 C 1.34782 * 119.99662 * 180.02562 * 8 7 6 10 10 O 1.21538 * 119.99995 * 359.97438 * 9 8 7 11 11 C 1.47649 * 119.99745 * 180.02562 * 9 8 7 12 12 C 1.34210 * 119.99797 * 180.02562 * 11 9 8 13 13 C 1.47639 * 119.99920 * 179.97438 * 12 11 9 14 14 O 1.21538 * 120.00136 * 359.97438 * 13 12 11 15 15 N 1.34784 * 120.00281 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00075 * 180.02562 * 15 13 12 17 17 H 1.08996 * 109.47049 * 324.99133 * 16 15 13 18 18 C 1.52997 * 109.47188 * 85.00024 * 16 15 13 19 19 C 1.50706 * 109.46582 * 204.99875 * 16 15 13 20 20 H 1.07999 * 120.00196 * 359.97438 * 19 16 15 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47474 * 90.00322 * 23 21 19 25 25 H 1.48510 * 109.47116 * 210.00055 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99887 * 23 21 19 27 27 C 1.38269 * 120.11192 * 0.25103 * 6 5 4 28 28 C 1.38146 * 120.05386 * 359.45061 * 27 6 5 29 29 H 1.08996 * 109.46955 * 60.00548 * 1 2 3 30 30 H 1.09008 * 109.46735 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47423 * 299.99774 * 1 2 3 32 32 H 1.08001 * 120.03243 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.97213 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.46857 * 329.99927 * 7 6 5 35 35 H 1.08993 * 109.46912 * 210.00026 * 7 6 5 36 36 H 0.97002 * 120.00363 * 0.02562 * 8 7 6 37 37 H 1.07995 * 120.00297 * 359.97438 * 11 9 8 38 38 H 1.07999 * 119.99446 * 359.97438 * 12 11 9 39 39 H 0.96996 * 119.99132 * 359.97438 * 15 13 12 40 40 H 1.09002 * 109.47153 * 299.99573 * 18 16 15 41 41 H 1.09001 * 109.46832 * 179.97438 * 18 16 15 42 42 H 1.09004 * 109.47261 * 59.99745 * 18 16 15 43 43 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 44 44 H 1.07996 * 119.97523 * 179.70520 * 27 6 5 45 45 H 1.07997 * 120.03108 * 180.24924 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5169 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0028 8 7 4.2080 5.4547 -1.3781 9 6 4.8101 6.6353 -1.6233 10 8 5.1683 7.3384 -0.6989 11 6 5.0334 7.0750 -3.0150 12 6 5.6334 8.2505 -3.2592 13 6 5.8572 8.6899 -4.6508 14 8 5.4986 7.9871 -5.5752 15 7 6.4593 9.8706 -4.8961 16 6 6.6809 10.3069 -6.2770 17 1 6.9004 9.4405 -6.9009 18 6 5.4241 11.0062 -6.7988 19 6 7.8435 11.2648 -6.3206 20 1 8.3649 11.5230 -5.4107 21 6 8.2416 11.8114 -7.5222 22 7 7.6064 11.4973 -8.6301 23 14 9.6832 12.9981 -7.5764 24 1 10.9417 12.2390 -7.7889 25 1 9.4910 13.9599 -8.6915 26 1 9.7629 13.7391 -6.2919 27 6 1.9210 3.6048 0.0068 28 6 1.2914 2.3751 0.0001 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0209 0.3800 0.0005 33 1 5.1345 2.5751 0.0011 34 1 4.9437 4.9380 0.5169 35 1 3.3577 5.7459 0.5169 36 1 3.9218 4.8937 -2.1158 37 1 4.7147 6.4505 -3.8364 38 1 5.9524 8.8748 -2.4377 39 1 6.7452 10.4316 -4.1584 40 1 4.5832 10.3134 -6.7672 41 1 5.5892 11.3312 -7.8260 42 1 5.2047 11.8726 -6.1747 43 1 7.8862 11.8822 -9.4753 44 1 1.3341 4.5113 0.0121 45 1 0.2129 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900433394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:35 Heat of formation + Delta-G solvation = -71.750477 kcal Electronic energy + Delta-G solvation = -26031.586614 eV Core-core repulsion = 22014.758935 eV Total energy + Delta-G solvation = -4016.827679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.69423 -39.82609 -38.86110 -38.10200 -34.99361 -34.88111 -32.80525 -32.35851 -31.62317 -31.08702 -29.02794 -28.14607 -26.31027 -25.27865 -24.04477 -23.13022 -21.70041 -21.22541 -20.00145 -19.27290 -18.65503 -17.81744 -17.04944 -16.78180 -16.28712 -16.16255 -15.77130 -15.28669 -15.27306 -15.19531 -14.60923 -14.32139 -14.24961 -14.05957 -13.92838 -13.84723 -13.16837 -13.03935 -12.80424 -12.45412 -12.44128 -12.09736 -11.94047 -11.74183 -11.57293 -11.29144 -11.09984 -10.99860 -10.79190 -10.33349 -10.24878 -10.17879 -9.69222 -9.48724 -9.27587 -9.25818 -9.07307 -8.64922 -8.56903 -7.97217 -6.13737 -4.23116 0.81969 0.87855 0.97009 2.76559 2.90852 3.04154 3.24949 3.31552 3.33648 3.41833 3.88221 4.06858 4.26585 4.30239 4.36983 4.39987 4.57383 4.64018 4.83608 4.86029 4.88121 4.96284 5.11807 5.18150 5.18987 5.27731 5.40133 5.51206 5.56405 5.75152 5.84932 6.06529 6.13508 6.14083 6.25846 6.31288 6.80439 6.87603 6.93683 7.11606 7.30180 7.38458 7.52553 7.67421 7.88317 8.04614 8.12097 8.59043 8.74082 9.02463 9.44217 10.92328 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029014 B = 0.001541 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.824509 B =18166.721135 C =18539.797521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.134 3.866 4 C -0.153 4.153 5 C -0.059 4.059 6 C -0.147 4.147 7 C 0.166 3.834 8 N -0.723 5.723 9 C 0.548 3.452 10 O -0.539 6.539 11 C -0.155 4.155 12 C -0.097 4.097 13 C 0.523 3.477 14 O -0.550 6.550 15 N -0.695 5.695 16 C 0.262 3.738 17 H 0.051 0.949 18 C -0.147 4.147 19 C -0.535 4.535 20 H 0.063 0.937 21 C 0.067 3.933 22 N -0.883 5.883 23 Si 0.903 3.097 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.058 4.058 28 C -0.210 4.210 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.405 0.595 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.393 0.607 40 H 0.015 0.985 41 H 0.091 0.909 42 H 0.028 0.972 43 H 0.265 0.735 44 H 0.128 0.872 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.615 -20.277 19.213 31.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.088 3.912 4 C -0.172 4.172 5 C -0.077 4.077 6 C -0.148 4.148 7 C 0.043 3.957 8 N -0.375 5.375 9 C 0.336 3.664 10 O -0.417 6.417 11 C -0.178 4.178 12 C -0.120 4.120 13 C 0.308 3.692 14 O -0.430 6.430 15 N -0.342 5.342 16 C 0.160 3.840 17 H 0.069 0.931 18 C -0.206 4.206 19 C -0.573 4.573 20 H 0.081 0.919 21 C -0.137 4.137 22 N -0.521 5.521 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.077 4.077 28 C -0.229 4.229 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.240 0.760 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.225 0.775 40 H 0.034 0.966 41 H 0.110 0.890 42 H 0.047 0.953 43 H 0.075 0.925 44 H 0.146 0.854 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.517 -20.385 18.993 30.968 hybrid contribution 0.411 0.731 -0.070 0.842 sum -13.106 -19.654 18.923 30.268 Atomic orbital electron populations 1.23094 0.78110 1.04153 1.01527 1.86085 1.21635 1.26930 1.88442 1.19132 0.92460 0.84228 0.95370 1.20461 0.91378 0.98796 1.06568 1.20953 1.00140 0.90811 0.95824 1.19787 0.93728 0.94719 1.06519 1.20113 1.00329 0.91771 0.83491 1.45979 1.61632 1.21210 1.08702 1.18712 0.77296 0.80812 0.89563 1.90777 1.50695 1.54181 1.46072 1.23079 1.01103 0.98329 0.95312 1.23677 0.94490 0.96211 0.97587 1.18525 0.79757 0.82679 0.88266 1.90736 1.51807 1.54823 1.45658 1.46520 1.56922 1.18768 1.11957 1.18829 0.93592 0.95256 0.76315 0.93119 1.22081 0.96376 0.98094 1.04034 1.21218 1.14633 1.27213 0.94285 0.91932 1.24886 0.96936 0.96517 0.95332 1.69899 1.40058 1.43581 0.98548 0.86427 0.82227 0.80527 0.77795 1.20537 1.21063 1.19801 1.20916 0.93812 0.97314 0.95633 1.21256 1.00235 0.92229 1.09195 0.92426 0.88096 0.92526 0.84913 0.84896 0.90457 0.90552 0.76035 0.84053 0.84423 0.77457 0.96570 0.89018 0.95329 0.92539 0.85378 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.43 10.50 -19.44 -0.20 -2.63 16 3 C 0.13 1.05 6.69 -39.21 -0.26 0.79 16 4 C -0.15 -1.15 9.99 -39.43 -0.39 -1.54 16 5 C -0.06 -0.41 9.69 -39.61 -0.38 -0.80 16 6 C -0.15 -1.07 5.25 -104.60 -0.55 -1.62 16 7 C 0.17 1.39 5.80 -5.19 -0.03 1.35 16 8 N -0.72 -6.83 5.55 -62.50 -0.35 -7.17 16 9 C 0.55 7.06 7.79 -12.42 -0.10 6.96 16 10 O -0.54 -8.61 16.25 5.33 0.09 -8.53 16 11 C -0.16 -2.13 9.60 -37.16 -0.36 -2.49 16 12 C -0.10 -1.51 9.60 -37.17 -0.36 -1.86 16 13 C 0.52 10.44 7.75 -12.42 -0.10 10.34 16 14 O -0.55 -12.88 15.91 5.33 0.08 -12.80 16 15 N -0.69 -14.53 5.07 -55.95 -0.28 -14.81 16 16 C 0.26 6.65 2.56 -69.08 -0.18 6.47 16 17 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 18 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 19 C -0.54 -14.16 8.73 -34.44 -0.30 -14.46 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 21 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 22 N -0.88 -24.77 11.32 55.43 0.63 -24.14 16 23 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.06 -0.40 9.69 -39.60 -0.38 -0.78 16 28 C -0.21 -1.43 9.04 -39.43 -0.36 -1.79 16 29 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 30 H 0.10 0.23 8.14 -51.92 -0.42 -0.19 16 31 H 0.06 0.17 7.66 -51.93 -0.40 -0.22 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.40 3.09 8.45 -40.82 -0.34 2.75 16 37 H 0.14 1.84 7.53 -52.49 -0.39 1.45 16 38 H 0.14 1.95 7.53 -52.49 -0.39 1.55 16 39 H 0.39 7.10 8.53 -40.82 -0.35 6.75 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 45 H 0.13 0.64 6.30 -52.49 -0.33 0.30 16 LS Contribution 390.10 15.07 5.88 5.88 Total: -1.00 -33.38 390.10 -7.91 -41.29 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.24 Total: 7.25 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.50 Total: 0.06 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.00 Total: -46.12 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.03 Total: -23.96 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.38 -7.91 -41.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900433394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.456 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds