Wall clock time and date at job start Tue Mar 31 2020 18:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99775 * 2 1 4 4 C 1.38737 * 120.05198 * 179.97438 * 3 2 1 5 5 C 1.38141 * 119.94062 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05718 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94660 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.46829 * 90.00212 * 7 6 5 9 9 C 1.34782 * 119.99662 * 180.02562 * 8 7 6 10 10 O 1.21538 * 119.99995 * 359.97438 * 9 8 7 11 11 C 1.47649 * 119.99745 * 180.02562 * 9 8 7 12 12 C 1.34210 * 119.99797 * 180.02562 * 11 9 8 13 13 C 1.47639 * 119.99920 * 179.97438 * 12 11 9 14 14 O 1.21538 * 120.00136 * 359.97438 * 13 12 11 15 15 N 1.34784 * 120.00281 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00075 * 180.02562 * 15 13 12 17 17 H 1.08996 * 109.47049 * 324.99133 * 16 15 13 18 18 C 1.52997 * 109.47188 * 85.00024 * 16 15 13 19 19 C 1.50706 * 109.46582 * 204.99875 * 16 15 13 20 20 H 1.07999 * 120.00196 * 359.97438 * 19 16 15 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47474 * 90.00322 * 23 21 19 25 25 H 1.48510 * 109.47116 * 210.00055 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99887 * 23 21 19 27 27 C 1.38269 * 120.11192 * 0.25103 * 6 5 4 28 28 C 1.38146 * 120.05386 * 359.45061 * 27 6 5 29 29 H 1.08996 * 109.46955 * 60.00548 * 1 2 3 30 30 H 1.09008 * 109.46735 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47423 * 299.99774 * 1 2 3 32 32 H 1.08001 * 120.03243 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.97213 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.46857 * 329.99927 * 7 6 5 35 35 H 1.08993 * 109.46912 * 210.00026 * 7 6 5 36 36 H 0.97002 * 120.00363 * 0.02562 * 8 7 6 37 37 H 1.07995 * 120.00297 * 359.97438 * 11 9 8 38 38 H 1.07999 * 119.99446 * 359.97438 * 12 11 9 39 39 H 0.96996 * 119.99132 * 359.97438 * 15 13 12 40 40 H 1.09002 * 109.47153 * 299.99573 * 18 16 15 41 41 H 1.09001 * 109.46832 * 179.97438 * 18 16 15 42 42 H 1.09004 * 109.47261 * 59.99745 * 18 16 15 43 43 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 44 44 H 1.07996 * 119.97523 * 179.70520 * 27 6 5 45 45 H 1.07997 * 120.03108 * 180.24924 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5169 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0028 8 7 4.2080 5.4547 -1.3781 9 6 4.8101 6.6353 -1.6233 10 8 5.1683 7.3384 -0.6989 11 6 5.0334 7.0750 -3.0150 12 6 5.6334 8.2505 -3.2592 13 6 5.8572 8.6899 -4.6508 14 8 5.4986 7.9871 -5.5752 15 7 6.4593 9.8706 -4.8961 16 6 6.6809 10.3069 -6.2770 17 1 6.9004 9.4405 -6.9009 18 6 5.4241 11.0062 -6.7988 19 6 7.8435 11.2648 -6.3206 20 1 8.3649 11.5230 -5.4107 21 6 8.2416 11.8114 -7.5222 22 7 7.6064 11.4973 -8.6301 23 14 9.6832 12.9981 -7.5764 24 1 10.9417 12.2390 -7.7889 25 1 9.4910 13.9599 -8.6915 26 1 9.7629 13.7391 -6.2919 27 6 1.9210 3.6048 0.0068 28 6 1.2914 2.3751 0.0001 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0209 0.3800 0.0005 33 1 5.1345 2.5751 0.0011 34 1 4.9437 4.9380 0.5169 35 1 3.3577 5.7459 0.5169 36 1 3.9218 4.8937 -2.1158 37 1 4.7147 6.4505 -3.8364 38 1 5.9524 8.8748 -2.4377 39 1 6.7452 10.4316 -4.1584 40 1 4.5832 10.3134 -6.7672 41 1 5.5892 11.3312 -7.8260 42 1 5.2047 11.8726 -6.1747 43 1 7.8862 11.8822 -9.4753 44 1 1.3341 4.5113 0.0121 45 1 0.2129 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900433394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:34 Heat of formation + Delta-G solvation = -94.768263 kcal Electronic energy + Delta-G solvation = -26032.584740 eV Core-core repulsion = 22014.758935 eV Total energy + Delta-G solvation = -4017.825805 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.29000 -40.88671 -40.36675 -38.69222 -36.81567 -35.78356 -34.38003 -33.99112 -32.15494 -31.77510 -30.86540 -28.59971 -27.36111 -27.07553 -25.23819 -23.64603 -22.90329 -22.15143 -21.49797 -20.70999 -19.14689 -19.14235 -18.47243 -17.46345 -17.31282 -17.21188 -16.93295 -16.64955 -16.20252 -16.02902 -15.99526 -15.71784 -15.29793 -14.93828 -14.74481 -14.67761 -14.45616 -14.41129 -13.72725 -13.56593 -13.51173 -13.32874 -12.98475 -12.89525 -12.82918 -12.75566 -12.51963 -12.26657 -12.13065 -12.02514 -11.76373 -11.29571 -11.12565 -10.93858 -10.92162 -10.59520 -10.16624 -9.99260 -9.79024 -9.19586 -8.17630 -6.34933 -0.25874 0.26146 0.36054 1.46445 1.46490 1.57428 1.84412 1.99097 2.35552 2.37864 2.45533 2.62608 2.87654 3.13212 3.65253 3.72928 3.80232 3.93215 4.05954 4.11331 4.18963 4.36766 4.38622 4.39840 4.58550 4.69064 4.74376 4.75100 4.76109 4.89375 4.93345 5.06130 5.07182 5.11169 5.22692 5.31366 5.34265 5.42075 5.58158 5.59236 5.68207 5.75737 5.88831 6.08762 6.39877 6.43377 6.71631 6.87724 7.08140 7.29768 7.45651 8.88758 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029014 B = 0.001541 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.824509 B =18166.721135 C =18539.797521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.122 3.878 4 C -0.167 4.167 5 C -0.060 4.060 6 C -0.151 4.151 7 C 0.168 3.832 8 N -0.704 5.704 9 C 0.551 3.449 10 O -0.569 6.569 11 C -0.126 4.126 12 C -0.110 4.110 13 C 0.524 3.476 14 O -0.591 6.591 15 N -0.693 5.693 16 C 0.267 3.733 17 H 0.004 0.996 18 C -0.134 4.134 19 C -0.549 4.549 20 H 0.074 0.926 21 C 0.016 3.984 22 N -0.916 5.916 23 Si 0.972 3.028 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.261 1.261 27 C -0.061 4.061 28 C -0.214 4.214 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.416 0.584 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.408 0.592 40 H 0.015 0.985 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.266 0.734 44 H 0.141 0.859 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.919 -20.455 20.915 32.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.076 3.924 4 C -0.186 4.186 5 C -0.078 4.078 6 C -0.152 4.152 7 C 0.046 3.954 8 N -0.356 5.356 9 C 0.339 3.661 10 O -0.449 6.449 11 C -0.149 4.149 12 C -0.133 4.133 13 C 0.312 3.688 14 O -0.474 6.474 15 N -0.341 5.341 16 C 0.163 3.837 17 H 0.022 0.978 18 C -0.193 4.193 19 C -0.587 4.587 20 H 0.092 0.908 21 C -0.184 4.184 22 N -0.554 5.554 23 Si 0.797 3.203 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.185 1.185 27 C -0.079 4.079 28 C -0.232 4.232 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.162 0.838 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.252 0.748 37 H 0.167 0.833 38 H 0.173 0.827 39 H 0.243 0.757 40 H 0.034 0.966 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.159 0.841 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.843 -20.594 20.734 32.336 hybrid contribution 0.393 0.602 -0.562 0.912 sum -13.451 -19.992 20.172 31.425 Atomic orbital electron populations 1.23344 0.76431 1.05560 1.02315 1.86060 1.23496 1.27071 1.88432 1.19359 0.92831 0.84730 0.95472 1.20646 0.91692 0.99258 1.06958 1.21092 1.00774 0.90598 0.95384 1.19699 0.93955 0.94113 1.07391 1.20158 1.00499 0.92320 0.82447 1.45917 1.59772 1.19981 1.09907 1.18501 0.77572 0.81502 0.88560 1.90775 1.52227 1.55319 1.46603 1.23265 0.98187 0.97202 0.96245 1.23327 0.97257 0.97724 0.94979 1.19104 0.78274 0.81670 0.89740 1.90711 1.53380 1.55773 1.47495 1.46258 1.57483 1.19666 1.10706 1.18450 0.93809 0.93370 0.78022 0.97776 1.21904 0.96161 0.98386 1.02868 1.21546 1.15044 1.27245 0.94884 0.90837 1.25777 0.99545 0.98174 0.94928 1.70042 1.41593 1.44669 0.99127 0.85341 0.78568 0.78221 0.78174 1.20362 1.20887 1.18502 1.21107 0.93789 0.97911 0.95118 1.21463 1.01200 0.91825 1.08723 0.91736 0.86531 0.91569 0.84410 0.83826 0.90478 0.90440 0.74760 0.83313 0.82704 0.75669 0.96597 0.91298 0.94027 0.92486 0.84126 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.23 16 2 O -0.34 -4.82 10.50 -92.46 -0.97 -5.79 16 3 C 0.12 1.77 6.69 22.51 0.15 1.92 16 4 C -0.17 -2.34 9.99 22.37 0.22 -2.12 16 5 C -0.06 -0.76 9.69 22.25 0.22 -0.54 16 6 C -0.15 -1.94 5.25 -19.85 -0.10 -2.04 16 7 C 0.17 2.48 5.80 85.64 0.50 2.98 16 8 N -0.70 -11.78 5.55 -469.94 -2.61 -14.39 16 9 C 0.55 13.11 7.79 86.73 0.68 13.79 16 10 O -0.57 -17.17 16.25 -3.83 -0.06 -17.24 16 11 C -0.13 -3.25 9.60 23.84 0.23 -3.02 16 12 C -0.11 -3.30 9.60 23.83 0.23 -3.08 16 13 C 0.52 20.97 7.75 86.72 0.67 21.64 16 14 O -0.59 -28.17 15.91 -3.83 -0.06 -28.23 16 15 N -0.69 -29.02 5.07 -449.21 -2.28 -31.29 16 16 C 0.27 13.84 2.56 44.25 0.11 13.95 16 17 H 0.00 0.26 7.58 -2.39 -0.02 0.24 16 18 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16 19 C -0.55 -29.06 8.73 25.60 0.22 -28.84 16 20 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 21 C 0.02 0.86 5.30 84.66 0.45 1.31 16 22 N -0.92 -52.24 11.32 21.45 0.24 -52.00 16 23 Si 0.97 41.95 29.54 68.60 2.03 43.98 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 27 C -0.06 -0.72 9.69 22.26 0.22 -0.50 16 28 C -0.21 -2.54 9.04 22.37 0.20 -2.34 16 29 H 0.06 0.32 7.66 -2.39 -0.02 0.30 16 30 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.07 0.29 7.66 -2.39 -0.02 0.28 16 32 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 34 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 35 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 36 H 0.42 5.36 8.45 -92.71 -0.78 4.58 16 37 H 0.15 3.64 7.53 -2.91 -0.02 3.61 16 38 H 0.16 4.12 7.53 -2.91 -0.02 4.10 16 39 H 0.41 14.43 8.53 -92.71 -0.79 13.64 16 40 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 42 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 44 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 45 H 0.15 1.13 6.30 -2.91 -0.02 1.11 16 Total: -1.00 -72.30 390.10 1.52 -70.78 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -0.54 Total: 25.96 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 5.77 Total: 8.21 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -4.64 Total: -97.67 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -1.09 Total: -51.25 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -72.30 1.52 -70.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900433394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.984 kcal (2) G-P(sol) polarization free energy of solvation -72.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds