Wall clock time and date at job start Tue Mar 31 2020 18:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 117.00455 * 2 1 4 4 C 1.38728 * 120.05643 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94444 * 180.02562 * 4 3 2 6 6 C 1.38263 * 120.05293 * 0.02562 * 5 4 3 7 7 C 1.50709 * 119.94571 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.46877 * 89.99978 * 7 6 5 9 9 C 1.34780 * 120.00181 * 180.02562 * 8 7 6 10 10 O 1.21540 * 119.99551 * 0.02562 * 9 8 7 11 11 C 1.47643 * 120.00174 * 179.97438 * 9 8 7 12 12 C 1.34213 * 119.99779 * 188.41907 * 11 9 8 13 13 C 1.47641 * 119.99867 * 30.65188 * 12 11 9 14 14 O 1.21537 * 120.00451 * 6.00401 * 13 12 11 15 15 N 1.34786 * 119.99736 * 186.00701 * 13 12 11 16 16 C 1.46492 * 119.99956 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.47492 * 34.99655 * 16 15 13 18 18 C 1.53000 * 109.47104 * 274.99794 * 16 15 13 19 19 C 1.50703 * 109.47169 * 154.99530 * 16 15 13 20 20 H 1.07997 * 119.99590 * 0.02562 * 19 16 15 21 21 C 1.37878 * 119.99733 * 179.97438 * 19 16 15 22 22 N 1.31508 * 120.00365 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99551 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47256 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47248 * 120.00046 * 23 21 19 26 26 H 1.48501 * 109.47333 * 240.00072 * 23 21 19 27 27 C 1.38268 * 120.11605 * 0.25458 * 6 5 4 28 28 C 1.38144 * 120.04978 * 359.45000 * 27 6 5 29 29 H 1.08999 * 109.47030 * 299.99888 * 1 2 3 30 30 H 1.08999 * 109.46893 * 59.99546 * 1 2 3 31 31 H 1.08997 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.08005 * 120.03200 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.97490 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.46962 * 330.00449 * 7 6 5 35 35 H 1.08987 * 109.47141 * 210.00333 * 7 6 5 36 36 H 0.97003 * 120.00335 * 0.02562 * 8 7 6 37 37 H 1.07997 * 120.00084 * 8.41799 * 11 9 8 38 38 H 1.07996 * 119.99610 * 210.37918 * 12 11 9 39 39 H 0.96996 * 119.99599 * 359.97438 * 15 13 12 40 40 H 1.09000 * 109.46960 * 60.00531 * 18 16 15 41 41 H 1.09005 * 109.47274 * 180.02562 * 18 16 15 42 42 H 1.09000 * 109.47238 * 299.99909 * 18 16 15 43 43 H 0.97003 * 120.00179 * 179.97438 * 22 21 19 44 44 H 1.08000 * 119.97543 * 179.70189 * 27 6 5 45 45 H 1.08002 * 120.02760 * 180.25182 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5167 0.0011 6 6 3.3021 3.6756 0.0016 7 6 3.9863 5.0184 0.0028 8 7 4.2085 5.4544 -1.3781 9 6 4.8106 6.6350 -1.6234 10 8 5.1696 7.3377 -0.6990 11 6 5.0350 7.0742 -3.0150 12 6 5.7808 8.1620 -3.2634 13 6 6.8845 8.5241 -2.3520 14 8 7.1883 7.7806 -1.4399 15 7 7.5552 9.6794 -2.5316 16 6 8.6499 10.0390 -1.6270 17 1 9.1834 9.1375 -1.3258 18 6 8.0805 10.7327 -0.3878 19 6 9.5993 10.9721 -2.3334 20 1 9.4062 11.2680 -3.3540 21 6 10.7138 11.4488 -1.6764 22 7 10.9486 11.0889 -0.4335 23 14 11.8902 12.6060 -2.5518 24 1 11.4040 12.8549 -3.9327 25 1 11.9607 13.8924 -1.8131 26 1 13.2410 11.9914 -2.6055 27 6 1.9212 3.6047 0.0069 28 6 1.2917 2.3751 0.0002 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0209 0.3798 0.0005 33 1 5.1346 2.5748 0.0011 34 1 4.9441 4.9377 0.5168 35 1 3.3582 5.7457 0.5169 36 1 3.9222 4.8935 -2.1159 37 1 4.5990 6.5201 -3.8331 38 1 5.5764 8.7699 -4.1323 39 1 7.3129 10.2726 -3.2598 40 1 7.3939 10.0577 0.1231 41 1 8.8951 11.0007 0.2851 42 1 7.5471 11.6342 -0.6890 43 1 11.7329 11.4241 0.0286 44 1 1.3344 4.5114 0.0122 45 1 0.2130 2.3202 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900433396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:43 Heat of formation + Delta-G solvation = -52.493904 kcal Electronic energy + Delta-G solvation = -26821.163480 eV Core-core repulsion = 22805.170829 eV Total energy + Delta-G solvation = -4015.992651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.57140 -39.64434 -38.46113 -37.80911 -34.83651 -34.40097 -32.68814 -32.19587 -31.50173 -30.89086 -28.84550 -28.04780 -26.08099 -25.16463 -23.71651 -23.00319 -21.63435 -21.12027 -19.87870 -19.05819 -18.55591 -17.87692 -16.68138 -16.37050 -16.17231 -16.09001 -15.53547 -15.24325 -14.95766 -14.88455 -14.39629 -14.09516 -14.05778 -13.83912 -13.75094 -13.36073 -13.13729 -12.89405 -12.68095 -12.42482 -12.28419 -12.20223 -11.76659 -11.53371 -11.46208 -11.17529 -11.02554 -10.89951 -10.61710 -10.23199 -10.15010 -9.78400 -9.37102 -9.33154 -8.93503 -8.89356 -8.66386 -8.50637 -8.41975 -7.72075 -6.05133 -4.14278 0.94399 0.97485 0.99964 2.84566 3.16617 3.27653 3.35010 3.37879 3.47859 3.66510 4.12781 4.22338 4.38015 4.45965 4.48710 4.51794 4.65135 4.68686 4.95426 4.98947 5.02174 5.02401 5.25732 5.26614 5.28371 5.45484 5.53279 5.67978 5.75302 5.89029 5.95780 6.07638 6.25619 6.31258 6.37417 6.53517 6.96494 6.97115 7.14802 7.28829 7.60024 7.65683 7.69012 7.79750 8.03133 8.25059 8.55857 8.78926 8.88501 9.29625 9.53798 11.00787 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034878 B = 0.001748 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.610379 B =16012.242986 C =16270.751926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.130 3.870 4 C -0.153 4.153 5 C -0.059 4.059 6 C -0.140 4.140 7 C 0.167 3.833 8 N -0.732 5.732 9 C 0.533 3.467 10 O -0.486 6.486 11 C -0.158 4.158 12 C -0.107 4.107 13 C 0.516 3.484 14 O -0.516 6.516 15 N -0.705 5.705 16 C 0.265 3.735 17 H 0.048 0.952 18 C -0.146 4.146 19 C -0.532 4.532 20 H 0.061 0.939 21 C 0.065 3.935 22 N -0.883 5.883 23 Si 0.901 3.099 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.061 4.061 28 C -0.211 4.211 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.396 0.604 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.387 0.613 40 H 0.018 0.982 41 H 0.088 0.912 42 H 0.024 0.976 43 H 0.263 0.737 44 H 0.127 0.873 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.707 -19.091 -3.585 29.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.085 3.915 4 C -0.172 4.172 5 C -0.078 4.078 6 C -0.141 4.141 7 C 0.044 3.956 8 N -0.387 5.387 9 C 0.320 3.680 10 O -0.359 6.359 11 C -0.181 4.181 12 C -0.130 4.130 13 C 0.300 3.700 14 O -0.393 6.393 15 N -0.353 5.353 16 C 0.164 3.836 17 H 0.065 0.935 18 C -0.204 4.204 19 C -0.571 4.571 20 H 0.079 0.921 21 C -0.138 4.138 22 N -0.520 5.520 23 Si 0.729 3.271 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.079 4.079 28 C -0.230 4.230 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.230 0.770 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.219 0.781 40 H 0.037 0.963 41 H 0.107 0.893 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.145 0.855 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.953 -19.231 -2.028 29.256 hybrid contribution 0.033 0.744 -1.257 1.461 sum -21.920 -18.487 -3.285 28.863 Atomic orbital electron populations 1.23069 0.78278 1.04017 1.01450 1.86078 1.21494 1.27023 1.88593 1.19105 0.92437 0.84150 0.95857 1.20460 0.91333 0.98779 1.06600 1.21002 1.00317 0.90789 0.95667 1.19869 0.93649 0.94985 1.05575 1.20046 1.00282 0.91232 0.84025 1.45944 1.63574 1.21234 1.07945 1.18699 0.78276 0.81239 0.89813 1.90923 1.46385 1.53256 1.45298 1.23145 1.01807 0.97425 0.95695 1.23793 0.93299 0.95251 1.00637 1.18576 0.83660 0.82973 0.84785 1.90801 1.67192 1.50660 1.30614 1.46452 1.36005 1.19744 1.33141 1.18712 0.82627 0.95786 0.86511 0.93453 1.22048 1.00346 0.97859 1.00170 1.21282 1.07748 1.28775 0.99258 0.92073 1.24898 0.97626 0.96394 0.94888 1.69927 1.27552 1.44122 1.10446 0.86405 0.80704 0.80435 0.79585 1.19771 1.20931 1.20939 1.20908 0.93856 0.97196 0.95962 1.21228 1.00071 0.92259 1.09436 0.92559 0.92566 0.88197 0.84996 0.84806 0.90505 0.90937 0.77027 0.84478 0.84368 0.78125 0.96253 0.89347 0.95680 0.92705 0.85474 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.67 10.50 -19.43 -0.20 -2.87 16 3 C 0.13 1.15 6.69 -39.22 -0.26 0.88 16 4 C -0.15 -1.35 9.99 -39.43 -0.39 -1.75 16 5 C -0.06 -0.53 9.69 -39.61 -0.38 -0.92 16 6 C -0.14 -1.30 5.25 -104.60 -0.55 -1.85 16 7 C 0.17 1.91 5.80 -5.19 -0.03 1.88 16 8 N -0.73 -8.58 5.55 -62.50 -0.35 -8.93 16 9 C 0.53 8.50 7.14 -12.42 -0.09 8.41 16 10 O -0.49 -10.47 13.39 -19.45 -0.26 -10.73 16 11 C -0.16 -2.07 9.94 -37.16 -0.37 -2.44 16 12 C -0.11 -1.60 9.93 -37.16 -0.37 -1.97 16 13 C 0.52 11.01 7.17 -12.42 -0.09 10.93 16 14 O -0.52 -13.29 12.98 -19.45 -0.25 -13.54 16 15 N -0.70 -15.50 5.07 -55.95 -0.28 -15.78 16 16 C 0.27 7.11 2.56 -69.08 -0.18 6.93 16 17 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 18 C -0.15 -3.89 9.26 37.16 0.34 -3.54 16 19 C -0.53 -14.54 8.73 -34.44 -0.30 -14.84 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 22 N -0.88 -25.66 11.32 55.43 0.63 -25.04 16 23 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C -0.06 -0.50 9.69 -39.60 -0.38 -0.88 16 28 C -0.21 -1.63 9.04 -39.43 -0.36 -1.99 16 29 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 30 H 0.06 0.20 7.66 -51.93 -0.40 -0.19 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.08 1.01 8.08 -51.93 -0.42 0.60 16 35 H 0.07 0.85 8.08 -51.94 -0.42 0.44 16 36 H 0.40 3.44 8.45 -40.82 -0.34 3.10 16 37 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 39 H 0.39 7.21 8.52 -40.82 -0.35 6.86 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 42 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.13 0.72 6.30 -52.49 -0.33 0.39 16 LS Contribution 384.82 15.07 5.80 5.80 Total: -1.00 -36.91 384.82 -8.74 -45.65 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.29 Total: 7.71 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.51 Total: 1.69 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.00 Total: -49.75 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.72 Total: -27.14 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.91 -8.74 -45.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900433396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.841 kcal (2) G-P(sol) polarization free energy of solvation -36.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds