Wall clock time and date at job start Tue Mar 31 2020 18:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 117.00455 * 2 1 4 4 C 1.38728 * 120.05643 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94444 * 180.02562 * 4 3 2 6 6 C 1.38263 * 120.05293 * 0.02562 * 5 4 3 7 7 C 1.50709 * 119.94571 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.46877 * 89.99978 * 7 6 5 9 9 C 1.34780 * 120.00181 * 180.02562 * 8 7 6 10 10 O 1.21540 * 119.99551 * 0.02562 * 9 8 7 11 11 C 1.47643 * 120.00174 * 179.97438 * 9 8 7 12 12 C 1.34213 * 119.99779 * 188.41907 * 11 9 8 13 13 C 1.47641 * 119.99867 * 30.65188 * 12 11 9 14 14 O 1.21537 * 120.00451 * 6.00401 * 13 12 11 15 15 N 1.34786 * 119.99736 * 186.00701 * 13 12 11 16 16 C 1.46492 * 119.99956 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.47492 * 34.99655 * 16 15 13 18 18 C 1.53000 * 109.47104 * 274.99794 * 16 15 13 19 19 C 1.50703 * 109.47169 * 154.99530 * 16 15 13 20 20 H 1.07997 * 119.99590 * 0.02562 * 19 16 15 21 21 C 1.37878 * 119.99733 * 179.97438 * 19 16 15 22 22 N 1.31508 * 120.00365 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99551 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47256 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47248 * 120.00046 * 23 21 19 26 26 H 1.48501 * 109.47333 * 240.00072 * 23 21 19 27 27 C 1.38268 * 120.11605 * 0.25458 * 6 5 4 28 28 C 1.38144 * 120.04978 * 359.45000 * 27 6 5 29 29 H 1.08999 * 109.47030 * 299.99888 * 1 2 3 30 30 H 1.08999 * 109.46893 * 59.99546 * 1 2 3 31 31 H 1.08997 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.08005 * 120.03200 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.97490 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.46962 * 330.00449 * 7 6 5 35 35 H 1.08987 * 109.47141 * 210.00333 * 7 6 5 36 36 H 0.97003 * 120.00335 * 0.02562 * 8 7 6 37 37 H 1.07997 * 120.00084 * 8.41799 * 11 9 8 38 38 H 1.07996 * 119.99610 * 210.37918 * 12 11 9 39 39 H 0.96996 * 119.99599 * 359.97438 * 15 13 12 40 40 H 1.09000 * 109.46960 * 60.00531 * 18 16 15 41 41 H 1.09005 * 109.47274 * 180.02562 * 18 16 15 42 42 H 1.09000 * 109.47238 * 299.99909 * 18 16 15 43 43 H 0.97003 * 120.00179 * 179.97438 * 22 21 19 44 44 H 1.08000 * 119.97543 * 179.70189 * 27 6 5 45 45 H 1.08002 * 120.02760 * 180.25182 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5167 0.0011 6 6 3.3021 3.6756 0.0016 7 6 3.9863 5.0184 0.0028 8 7 4.2085 5.4544 -1.3781 9 6 4.8106 6.6350 -1.6234 10 8 5.1696 7.3377 -0.6990 11 6 5.0350 7.0742 -3.0150 12 6 5.7808 8.1620 -3.2634 13 6 6.8845 8.5241 -2.3520 14 8 7.1883 7.7806 -1.4399 15 7 7.5552 9.6794 -2.5316 16 6 8.6499 10.0390 -1.6270 17 1 9.1834 9.1375 -1.3258 18 6 8.0805 10.7327 -0.3878 19 6 9.5993 10.9721 -2.3334 20 1 9.4062 11.2680 -3.3540 21 6 10.7138 11.4488 -1.6764 22 7 10.9486 11.0889 -0.4335 23 14 11.8902 12.6060 -2.5518 24 1 11.4040 12.8549 -3.9327 25 1 11.9607 13.8924 -1.8131 26 1 13.2410 11.9914 -2.6055 27 6 1.9212 3.6047 0.0069 28 6 1.2917 2.3751 0.0002 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0209 0.3798 0.0005 33 1 5.1346 2.5748 0.0011 34 1 4.9441 4.9377 0.5168 35 1 3.3582 5.7457 0.5169 36 1 3.9222 4.8935 -2.1159 37 1 4.5990 6.5201 -3.8331 38 1 5.5764 8.7699 -4.1323 39 1 7.3129 10.2726 -3.2598 40 1 7.3939 10.0577 0.1231 41 1 8.8951 11.0007 0.2851 42 1 7.5471 11.6342 -0.6890 43 1 11.7329 11.4241 0.0286 44 1 1.3344 4.5114 0.0122 45 1 0.2130 2.3202 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900433396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:42 Heat of formation + Delta-G solvation = -79.013357 kcal Electronic energy + Delta-G solvation = -26822.313450 eV Core-core repulsion = 22805.170829 eV Total energy + Delta-G solvation = -4017.142621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.28362 -40.91501 -39.88418 -38.64382 -36.68477 -35.60101 -34.28992 -33.86488 -32.15780 -31.72322 -30.79688 -28.57265 -27.35590 -26.95845 -25.02719 -23.65281 -22.94893 -22.13084 -21.58895 -20.52675 -19.36018 -19.09202 -18.09393 -17.38752 -17.27358 -17.03454 -16.82519 -16.63794 -16.06119 -15.96541 -15.77373 -15.49818 -15.10206 -14.73919 -14.72444 -14.49984 -14.46700 -14.29367 -13.99479 -13.60640 -13.54065 -13.36734 -12.96182 -12.85308 -12.81806 -12.70339 -12.51338 -12.28324 -12.10100 -12.01241 -11.76720 -11.14097 -11.08444 -10.82884 -10.60589 -10.05596 -10.01253 -9.98281 -9.59714 -9.18853 -8.16250 -6.34636 -0.21355 0.26296 0.34456 1.45219 1.45475 1.58588 2.12726 2.30723 2.35327 2.38015 2.63744 2.77664 2.85624 3.13926 3.69557 3.78979 3.92411 3.95558 4.06331 4.17827 4.36099 4.40125 4.40719 4.48599 4.57104 4.68311 4.73028 4.75984 4.76754 4.92899 4.95027 5.04946 5.10159 5.18342 5.22487 5.32001 5.45891 5.47847 5.60247 5.64008 5.70812 5.73508 5.94995 6.10825 6.40870 6.66538 6.74655 7.06725 7.33867 7.42089 7.70832 8.90688 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034878 B = 0.001748 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.610379 B =16012.242986 C =16270.751926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.124 3.876 4 C -0.164 4.164 5 C -0.065 4.065 6 C -0.146 4.146 7 C 0.171 3.829 8 N -0.710 5.710 9 C 0.517 3.483 10 O -0.553 6.553 11 C -0.128 4.128 12 C -0.123 4.123 13 C 0.504 3.496 14 O -0.571 6.571 15 N -0.703 5.703 16 C 0.272 3.728 17 H -0.007 1.007 18 C -0.129 4.129 19 C -0.544 4.544 20 H 0.077 0.923 21 C 0.009 3.991 22 N -0.921 5.921 23 Si 0.978 3.022 24 H -0.256 1.256 25 H -0.279 1.279 26 H -0.284 1.284 27 C -0.058 4.058 28 C -0.208 4.208 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.415 0.585 37 H 0.202 0.798 38 H 0.192 0.808 39 H 0.405 0.595 40 H 0.002 0.998 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.265 0.735 44 H 0.142 0.858 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.008 -19.374 -6.612 32.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.079 3.921 4 C -0.182 4.182 5 C -0.084 4.084 6 C -0.147 4.147 7 C 0.047 3.953 8 N -0.364 5.364 9 C 0.305 3.695 10 O -0.430 6.430 11 C -0.150 4.150 12 C -0.145 4.145 13 C 0.292 3.708 14 O -0.451 6.451 15 N -0.353 5.353 16 C 0.168 3.832 17 H 0.011 0.989 18 C -0.188 4.188 19 C -0.582 4.582 20 H 0.095 0.905 21 C -0.190 4.190 22 N -0.560 5.560 23 Si 0.802 3.198 24 H -0.180 1.180 25 H -0.205 1.205 26 H -0.210 1.210 27 C -0.077 4.077 28 C -0.226 4.226 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.252 0.748 37 H 0.219 0.781 38 H 0.209 0.791 39 H 0.241 0.759 40 H 0.021 0.979 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.160 0.840 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.320 -19.555 -5.125 31.625 hybrid contribution 0.624 0.639 -0.217 0.919 sum -23.697 -18.916 -5.343 30.788 Atomic orbital electron populations 1.23363 0.76315 1.05615 1.02419 1.86062 1.23599 1.26874 1.88423 1.19276 0.92561 0.84840 0.95464 1.20583 0.91927 0.98822 1.06906 1.21020 1.00390 0.90993 0.95969 1.19651 0.94222 0.93565 1.07242 1.19937 0.99112 0.92537 0.83674 1.45827 1.61700 1.20090 1.08827 1.19455 0.77707 0.81594 0.90756 1.90910 1.49226 1.55428 1.47483 1.23707 0.99972 0.95898 0.95432 1.23789 0.92711 0.96941 1.01017 1.19696 0.84697 0.81688 0.84741 1.90779 1.68835 1.52175 1.33306 1.46190 1.35138 1.20909 1.33091 1.18268 0.83974 0.93407 0.87523 0.98933 1.21856 0.99094 0.97956 0.99917 1.21602 1.08037 1.28642 0.99950 0.90458 1.25900 0.99499 0.98066 0.95538 1.70092 1.28233 1.45396 1.12238 0.85213 0.77804 0.77801 0.78973 1.17978 1.20513 1.20965 1.21060 0.93266 0.98135 0.95225 1.21461 1.01282 0.91488 1.08407 0.91673 0.91411 0.86478 0.84407 0.84971 0.93141 0.91450 0.74812 0.78085 0.79090 0.75942 0.97876 0.91619 0.94201 0.92621 0.84016 0.82982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.23 16 2 O -0.34 -5.08 10.50 -92.43 -0.97 -6.05 16 3 C 0.12 2.01 6.69 22.51 0.15 2.16 16 4 C -0.16 -2.81 9.99 22.36 0.22 -2.58 16 5 C -0.07 -1.17 9.69 22.25 0.22 -0.96 16 6 C -0.15 -2.65 5.25 -19.85 -0.10 -2.75 16 7 C 0.17 4.03 5.80 85.64 0.50 4.52 16 8 N -0.71 -16.04 5.55 -469.94 -2.61 -18.64 16 9 C 0.52 16.26 7.14 86.73 0.62 16.88 16 10 O -0.55 -24.91 13.39 19.85 0.27 -24.65 16 11 C -0.13 -2.94 9.94 23.84 0.24 -2.71 16 12 C -0.12 -3.35 9.93 23.84 0.24 -3.11 16 13 C 0.50 21.85 7.17 86.72 0.62 22.48 16 14 O -0.57 -31.01 12.98 19.86 0.26 -30.76 16 15 N -0.70 -31.30 5.07 -449.21 -2.28 -33.57 16 16 C 0.27 15.18 2.56 44.25 0.11 15.29 16 17 H -0.01 -0.48 7.58 -2.39 -0.02 -0.50 16 18 C -0.13 -7.24 9.26 71.98 0.67 -6.58 16 19 C -0.54 -29.96 8.73 25.60 0.22 -29.74 16 20 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 21 C 0.01 0.53 5.30 84.66 0.45 0.98 16 22 N -0.92 -55.26 11.32 21.45 0.24 -55.01 16 23 Si 0.98 43.09 29.54 68.60 2.03 45.12 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 27 C -0.06 -0.86 9.69 22.25 0.22 -0.64 16 28 C -0.21 -2.76 9.04 22.37 0.20 -2.56 16 29 H 0.06 0.32 7.66 -2.39 -0.02 0.31 16 30 H 0.07 0.30 7.66 -2.39 -0.02 0.28 16 31 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 33 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 34 H 0.05 1.46 8.08 -2.39 -0.02 1.44 16 35 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 36 H 0.41 6.19 8.45 -92.71 -0.78 5.40 16 37 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 38 H 0.19 3.12 8.06 -2.91 -0.02 3.10 16 39 H 0.41 14.66 8.52 -92.71 -0.79 13.87 16 40 H 0.00 0.12 8.14 -2.39 -0.02 0.11 16 41 H 0.07 3.95 6.07 -2.38 -0.01 3.94 16 42 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 45 H 0.15 1.22 6.30 -2.91 -0.02 1.20 16 Total: -1.00 -87.46 384.82 2.07 -85.39 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: -0.55 Total: 26.25 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.68 Total: 11.92 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -4.64 Total: -107.23 kcal Atomic # 8 Polarization: -61.00 SS G_CDS: -0.45 Total: -61.45 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -87.46 2.07 -85.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900433396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.373 kcal (2) G-P(sol) polarization free energy of solvation -87.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds