Wall clock time and date at job start Tue Mar 31 2020 17:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.81414 * 2 1 4 4 C 1.51499 * 109.82443 * 239.05974 * 2 1 3 5 5 O 1.20761 * 121.02101 * 106.60065 * 4 2 1 6 6 C 1.51328 * 117.96004 * 286.62103 * 4 2 1 7 7 C 1.53236 * 108.64563 * 307.40726 * 6 4 2 8 8 C 1.53109 * 109.43173 * 56.17841 * 7 6 4 9 9 N 1.46874 * 109.26637 * 301.62684 * 8 7 6 10 10 C 1.34773 * 120.71452 * 237.11325 * 9 8 7 11 11 O 1.21589 * 119.99972 * 355.06439 * 10 9 8 12 12 N 1.34778 * 119.99988 * 175.05798 * 10 9 8 13 13 C 1.46502 * 119.99977 * 185.18825 * 12 10 9 14 14 C 1.50695 * 109.47253 * 180.02562 * 13 12 10 15 15 C 1.38302 * 119.93391 * 269.72736 * 14 13 12 16 16 C 1.38099 * 120.07196 * 179.72292 * 15 14 13 17 17 C 1.38882 * 119.92985 * 0.54957 * 16 15 14 18 18 O 1.35746 * 120.07043 * 179.75232 * 17 16 15 19 19 C 1.34824 * 117.00170 * 185.45748 * 18 17 16 20 20 H 1.08009 * 119.99731 * 354.93812 * 19 18 17 21 21 C 1.38650 * 120.00428 * 174.94347 * 19 18 17 22 22 N 1.31555 * 119.99777 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00267 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47121 * 60.00267 * 23 21 19 25 25 H 1.48500 * 109.47165 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47491 * 300.00213 * 23 21 19 27 27 C 1.38886 * 119.85929 * 359.72323 * 17 16 15 28 28 C 1.38091 * 119.93179 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.46571 * 299.11894 * 1 2 3 30 30 H 1.08999 * 109.46638 * 179.12468 * 1 2 3 31 31 H 1.08993 * 109.47629 * 59.12310 * 1 2 3 32 32 H 1.08995 * 109.61217 * 187.66246 * 6 4 2 33 33 H 1.08994 * 109.74305 * 67.23538 * 6 4 2 34 34 H 1.08998 * 109.47741 * 296.18794 * 7 6 4 35 35 H 1.08997 * 109.48236 * 176.16780 * 7 6 4 36 36 H 1.08996 * 109.50267 * 181.68875 * 8 7 6 37 37 H 1.09001 * 109.50465 * 61.56081 * 8 7 6 38 38 H 0.96999 * 119.99883 * 5.19327 * 12 10 9 39 39 H 1.08999 * 109.47109 * 300.00395 * 13 12 10 40 40 H 1.08998 * 109.47303 * 60.00070 * 13 12 10 41 41 H 1.08005 * 119.96437 * 0.02562 * 15 14 13 42 42 H 1.08001 * 120.03398 * 180.27282 * 16 15 14 43 43 H 0.97006 * 120.00060 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.03395 * 179.97438 * 27 17 16 45 45 H 1.08000 * 119.96713 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0255 0.0000 4 6 2.0438 -0.7328 -1.2224 5 8 2.5330 -0.1316 -2.1485 6 6 1.9248 -2.2411 -1.2476 7 6 2.5504 -2.8034 0.0333 8 6 1.8733 -2.1697 1.2515 9 7 2.0294 -0.7107 1.1884 10 6 2.6175 -0.0370 2.1967 11 8 2.9445 -0.6235 3.2104 12 7 2.8433 1.2867 2.0814 13 6 3.5835 1.9974 3.1271 14 6 3.6971 3.4545 2.7601 15 6 4.7796 3.8980 2.0223 16 6 4.8837 5.2317 1.6795 17 6 3.9057 6.1301 2.0863 18 8 4.0078 7.4426 1.7552 19 6 3.0870 8.2785 2.2758 20 1 2.2667 7.8839 2.8571 21 6 3.1929 9.6448 2.0648 22 7 4.1922 10.1255 1.3570 23 14 1.9167 10.8030 2.7854 24 1 1.9050 10.6683 4.2643 25 1 2.2540 12.2017 2.4180 26 1 0.5762 10.4597 2.2465 27 6 2.8228 5.6826 2.8319 28 6 2.7218 4.3468 3.1670 29 1 -0.3632 0.5001 0.8978 30 1 -0.3632 -1.0276 -0.0157 31 1 -0.3634 0.5273 -0.8819 32 1 2.4526 -2.6353 -2.1159 33 1 0.8741 -2.5268 -1.2974 34 1 3.6157 -2.5732 0.0488 35 1 2.4116 -3.8841 0.0615 36 1 2.3377 -2.5464 2.1629 37 1 0.8130 -2.4226 1.2512 38 1 2.5156 1.7688 1.3062 39 1 3.0545 1.9020 4.0753 40 1 4.5805 1.5675 3.2225 41 1 5.5418 3.1996 1.7097 42 1 5.7270 5.5766 1.0996 43 1 4.2662 11.0813 1.2091 44 1 2.0609 6.3788 3.1500 45 1 1.8797 3.9981 3.7465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916487222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:17 Heat of formation + Delta-G solvation = -61.434809 kcal Electronic energy + Delta-G solvation = -27904.410986 eV Core-core repulsion = 23888.030628 eV Total energy + Delta-G solvation = -4016.380358 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.07626 -39.54514 -39.05734 -37.16499 -36.60139 -34.68678 -33.41157 -32.35182 -31.48196 -30.29350 -29.87128 -27.58721 -25.90135 -24.95592 -24.25424 -22.91277 -22.05958 -20.89811 -20.66779 -19.13929 -18.45189 -18.07327 -17.07264 -16.85740 -15.97375 -15.82600 -15.55918 -15.13449 -15.00503 -14.77201 -14.62686 -14.42042 -14.11660 -13.92992 -13.65799 -13.53673 -13.41431 -13.02697 -12.79451 -12.74585 -12.69673 -12.54197 -12.12649 -11.93606 -11.70792 -11.58471 -11.44208 -11.36592 -10.95999 -10.79760 -10.71197 -10.50608 -10.45870 -9.98605 -9.43926 -9.17096 -8.91607 -8.72265 -8.29139 -7.34064 -6.53316 -4.12341 1.40463 1.98728 2.12656 2.56050 3.04542 3.08454 3.09615 3.12639 3.49170 3.76920 3.90030 4.15054 4.35952 4.37831 4.50899 4.62371 4.75802 4.87480 5.00615 5.04063 5.10356 5.15490 5.21101 5.23044 5.30611 5.38479 5.42930 5.55167 5.60563 5.65833 5.74560 5.80793 5.87709 6.09929 6.12750 6.34661 6.49895 6.59673 6.65600 6.80051 6.95129 6.99844 7.14256 7.26661 7.34507 7.70529 7.82146 7.91137 8.46756 8.91771 9.59879 10.64089 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.002347 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.144466 B =11926.277638 C =12332.467322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.092 3.908 3 H 0.110 0.890 4 C 0.358 3.642 5 O -0.440 6.440 6 C -0.169 4.169 7 C -0.129 4.129 8 C 0.122 3.878 9 N -0.625 5.625 10 C 0.709 3.291 11 O -0.588 6.588 12 N -0.737 5.737 13 C 0.196 3.804 14 C -0.217 4.217 15 C -0.053 4.053 16 C -0.195 4.195 17 C 0.161 3.839 18 O -0.172 6.172 19 C -0.394 4.394 20 H 0.093 0.907 21 C 0.041 3.959 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.237 4.237 28 C -0.049 4.049 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.396 0.604 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.272 0.728 44 H 0.128 0.872 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 -23.346 -2.504 24.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.013 4.013 3 H 0.128 0.872 4 C 0.230 3.770 5 O -0.310 6.310 6 C -0.207 4.207 7 C -0.168 4.168 8 C 0.000 4.000 9 N -0.366 5.366 10 C 0.411 3.589 11 O -0.466 6.466 12 N -0.394 5.394 13 C 0.074 3.926 14 C -0.218 4.218 15 C -0.072 4.072 16 C -0.214 4.214 17 C 0.106 3.894 18 O -0.075 6.075 19 C -0.470 4.470 20 H 0.110 0.890 21 C -0.164 4.164 22 N -0.493 5.493 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.257 4.257 28 C -0.068 4.068 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.233 0.767 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.082 0.918 44 H 0.146 0.854 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.944 -23.043 -2.463 24.193 hybrid contribution -0.893 0.903 -0.045 1.270 sum -7.837 -22.141 -2.508 23.620 Atomic orbital electron populations 1.22082 0.92172 1.03477 1.03974 1.22013 0.96709 0.97637 0.84946 0.87220 1.25123 0.73456 0.92216 0.86184 1.90475 1.32273 1.71487 1.36735 1.22309 1.03988 0.93714 1.00648 1.21940 1.01022 1.01020 0.92803 1.21496 1.00837 0.78114 0.99590 1.47379 1.63485 1.07426 1.18263 1.15865 0.78284 0.82020 0.82778 1.90910 1.58531 1.68341 1.28825 1.45743 1.60418 1.06727 1.26490 1.19864 0.95561 0.87903 0.89277 1.19210 0.99346 0.93742 1.09518 1.20541 0.96418 0.94381 0.95859 1.20216 1.00534 0.92453 1.08244 1.19442 0.92659 0.85835 0.91432 1.83976 1.49914 1.12231 1.61369 1.21310 1.05149 0.87017 1.33539 0.88963 1.25318 0.97927 0.96491 0.96702 1.70028 1.29125 1.14261 1.35914 0.85764 0.79550 0.78733 0.79309 1.19401 1.20201 1.19437 1.21154 1.01319 0.96147 1.07063 1.20639 0.96684 0.92615 0.96876 0.90496 0.91281 0.90626 0.88978 0.87989 0.90874 0.89186 0.87911 0.91073 0.76728 0.91516 0.91699 0.86981 0.86362 0.91805 0.85415 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.31 37.16 0.35 -0.65 16 2 C 0.09 0.79 3.17 -68.31 -0.22 0.58 16 3 H 0.11 1.04 5.69 -51.93 -0.30 0.75 16 4 C 0.36 3.27 6.18 -28.33 -0.18 3.09 16 5 O -0.44 -5.68 17.90 6.00 0.11 -5.58 16 6 C -0.17 -0.98 6.01 -27.45 -0.16 -1.14 16 7 C -0.13 -0.72 6.09 -26.55 -0.16 -0.89 16 8 C 0.12 0.89 6.07 -3.78 -0.02 0.87 16 9 N -0.63 -6.09 2.66 -171.78 -0.46 -6.55 16 10 C 0.71 9.37 8.30 -86.92 -0.72 8.65 16 11 O -0.59 -9.67 15.77 5.29 0.08 -9.59 16 12 N -0.74 -9.48 5.46 -66.42 -0.36 -9.84 16 13 C 0.20 2.77 5.80 -5.20 -0.03 2.74 16 14 C -0.22 -3.48 5.25 -104.57 -0.55 -4.03 16 15 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 16 C -0.20 -3.96 9.99 -39.39 -0.39 -4.36 16 17 C 0.16 3.75 6.65 -39.10 -0.26 3.49 16 18 O -0.17 -4.79 9.76 0.08 0.00 -4.79 16 19 C -0.39 -10.72 9.49 30.88 0.29 -10.43 16 20 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -24.72 13.67 55.48 0.76 -23.96 16 23 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 C -0.24 -4.90 9.17 -39.40 -0.36 -5.26 16 28 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.32 7.10 -51.93 -0.37 -0.04 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.36 7.88 -51.93 -0.41 -0.05 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.90 7.00 -51.93 -0.36 0.54 16 37 H 0.07 0.37 7.51 -51.93 -0.39 -0.02 16 38 H 0.40 4.72 5.97 -40.82 -0.24 4.48 16 39 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 41 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 42 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.13 2.64 5.64 -52.49 -0.30 2.35 16 45 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -33.20 373.80 -8.54 -41.74 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.00 Total: 6.81 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -3.28 Total: -8.87 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: -0.06 Total: -40.35 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: 0.19 Total: -19.95 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.20 -8.54 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916487222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.695 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds