Wall clock time and date at job start Tue Mar 31 2020 17:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.81414 * 2 1 4 4 C 1.51499 * 109.82443 * 239.05974 * 2 1 3 5 5 O 1.20761 * 121.02101 * 106.60065 * 4 2 1 6 6 C 1.51328 * 117.96004 * 286.62103 * 4 2 1 7 7 C 1.53236 * 108.64563 * 307.40726 * 6 4 2 8 8 C 1.53109 * 109.43173 * 56.17841 * 7 6 4 9 9 N 1.46874 * 109.26637 * 301.62684 * 8 7 6 10 10 C 1.34773 * 120.71452 * 237.11325 * 9 8 7 11 11 O 1.21589 * 119.99972 * 355.06439 * 10 9 8 12 12 N 1.34778 * 119.99988 * 175.05798 * 10 9 8 13 13 C 1.46502 * 119.99977 * 185.18825 * 12 10 9 14 14 C 1.50695 * 109.47253 * 180.02562 * 13 12 10 15 15 C 1.38302 * 119.93391 * 269.72736 * 14 13 12 16 16 C 1.38099 * 120.07196 * 179.72292 * 15 14 13 17 17 C 1.38882 * 119.92985 * 0.54957 * 16 15 14 18 18 O 1.35746 * 120.07043 * 179.75232 * 17 16 15 19 19 C 1.34824 * 117.00170 * 185.45748 * 18 17 16 20 20 H 1.08009 * 119.99731 * 354.93812 * 19 18 17 21 21 C 1.38650 * 120.00428 * 174.94347 * 19 18 17 22 22 N 1.31555 * 119.99777 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00267 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47121 * 60.00267 * 23 21 19 25 25 H 1.48500 * 109.47165 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47491 * 300.00213 * 23 21 19 27 27 C 1.38886 * 119.85929 * 359.72323 * 17 16 15 28 28 C 1.38091 * 119.93179 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.46571 * 299.11894 * 1 2 3 30 30 H 1.08999 * 109.46638 * 179.12468 * 1 2 3 31 31 H 1.08993 * 109.47629 * 59.12310 * 1 2 3 32 32 H 1.08995 * 109.61217 * 187.66246 * 6 4 2 33 33 H 1.08994 * 109.74305 * 67.23538 * 6 4 2 34 34 H 1.08998 * 109.47741 * 296.18794 * 7 6 4 35 35 H 1.08997 * 109.48236 * 176.16780 * 7 6 4 36 36 H 1.08996 * 109.50267 * 181.68875 * 8 7 6 37 37 H 1.09001 * 109.50465 * 61.56081 * 8 7 6 38 38 H 0.96999 * 119.99883 * 5.19327 * 12 10 9 39 39 H 1.08999 * 109.47109 * 300.00395 * 13 12 10 40 40 H 1.08998 * 109.47303 * 60.00070 * 13 12 10 41 41 H 1.08005 * 119.96437 * 0.02562 * 15 14 13 42 42 H 1.08001 * 120.03398 * 180.27282 * 16 15 14 43 43 H 0.97006 * 120.00060 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.03395 * 179.97438 * 27 17 16 45 45 H 1.08000 * 119.96713 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0255 0.0000 4 6 2.0438 -0.7328 -1.2224 5 8 2.5330 -0.1316 -2.1485 6 6 1.9248 -2.2411 -1.2476 7 6 2.5504 -2.8034 0.0333 8 6 1.8733 -2.1697 1.2515 9 7 2.0294 -0.7107 1.1884 10 6 2.6175 -0.0370 2.1967 11 8 2.9445 -0.6235 3.2104 12 7 2.8433 1.2867 2.0814 13 6 3.5835 1.9974 3.1271 14 6 3.6971 3.4545 2.7601 15 6 4.7796 3.8980 2.0223 16 6 4.8837 5.2317 1.6795 17 6 3.9057 6.1301 2.0863 18 8 4.0078 7.4426 1.7552 19 6 3.0870 8.2785 2.2758 20 1 2.2667 7.8839 2.8571 21 6 3.1929 9.6448 2.0648 22 7 4.1922 10.1255 1.3570 23 14 1.9167 10.8030 2.7854 24 1 1.9050 10.6683 4.2643 25 1 2.2540 12.2017 2.4180 26 1 0.5762 10.4597 2.2465 27 6 2.8228 5.6826 2.8319 28 6 2.7218 4.3468 3.1670 29 1 -0.3632 0.5001 0.8978 30 1 -0.3632 -1.0276 -0.0157 31 1 -0.3634 0.5273 -0.8819 32 1 2.4526 -2.6353 -2.1159 33 1 0.8741 -2.5268 -1.2974 34 1 3.6157 -2.5732 0.0488 35 1 2.4116 -3.8841 0.0615 36 1 2.3377 -2.5464 2.1629 37 1 0.8130 -2.4226 1.2512 38 1 2.5156 1.7688 1.3062 39 1 3.0545 1.9020 4.0753 40 1 4.5805 1.5675 3.2225 41 1 5.5418 3.1996 1.7097 42 1 5.7270 5.5766 1.0996 43 1 4.2662 11.0813 1.2091 44 1 2.0609 6.3788 3.1500 45 1 1.8797 3.9981 3.7465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916487222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:16 Heat of formation + Delta-G solvation = -82.906766 kcal Electronic energy + Delta-G solvation = -27905.342080 eV Core-core repulsion = 23888.030628 eV Total energy + Delta-G solvation = -4017.311452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.91105 -40.88213 -40.32187 -38.61667 -37.62012 -35.84831 -34.38571 -33.99107 -32.20963 -31.86031 -31.24996 -28.33774 -27.57309 -26.27180 -25.05819 -23.67027 -23.58405 -22.19105 -21.78692 -20.09359 -19.85643 -19.18506 -18.80239 -17.74103 -16.93820 -16.63051 -16.49224 -16.36152 -16.29281 -16.00305 -15.77571 -15.63697 -15.54457 -15.31223 -14.93804 -14.51729 -14.47238 -14.33334 -14.03926 -13.65965 -13.55279 -13.35701 -13.26285 -13.08537 -12.98614 -12.57065 -12.53832 -12.39490 -12.24074 -12.14208 -12.13485 -11.96638 -11.49417 -11.22123 -10.82215 -10.76795 -10.22269 -9.83750 -9.54060 -9.04219 -8.49047 -6.17623 0.49271 0.55526 0.69938 1.35285 1.44730 1.51427 1.64953 2.03996 2.16693 2.67891 2.84344 2.94197 3.17581 3.46559 3.51598 3.80580 3.86076 3.90264 4.01134 4.05592 4.15102 4.22127 4.35231 4.44601 4.51434 4.54561 4.67892 4.68650 4.74075 4.78906 4.84824 4.89960 5.01741 5.06417 5.12553 5.12897 5.24377 5.28099 5.36625 5.45523 5.50829 5.66920 5.73001 5.78161 6.00044 6.13684 6.29021 6.82542 6.95454 7.45469 7.74408 8.73606 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.002347 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.144466 B =11926.277638 C =12332.467322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.089 3.911 3 H 0.095 0.905 4 C 0.359 3.641 5 O -0.486 6.486 6 C -0.163 4.163 7 C -0.121 4.121 8 C 0.116 3.884 9 N -0.619 5.619 10 C 0.707 3.293 11 O -0.622 6.622 12 N -0.736 5.736 13 C 0.203 3.797 14 C -0.184 4.184 15 C -0.045 4.045 16 C -0.206 4.206 17 C 0.124 3.876 18 O -0.228 6.228 19 C -0.415 4.415 20 H 0.105 0.895 21 C -0.022 4.022 22 N -0.919 5.919 23 Si 1.018 2.982 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.256 1.256 27 C -0.243 4.243 28 C -0.043 4.043 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.136 0.864 34 H 0.052 0.948 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.401 0.599 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.143 0.857 42 H 0.114 0.886 43 H 0.273 0.727 44 H 0.123 0.877 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.060 -26.836 -1.797 28.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.016 4.016 3 H 0.113 0.887 4 C 0.235 3.765 5 O -0.360 6.360 6 C -0.200 4.200 7 C -0.159 4.159 8 C -0.006 4.006 9 N -0.358 5.358 10 C 0.408 3.592 11 O -0.503 6.503 12 N -0.393 5.393 13 C 0.080 3.920 14 C -0.186 4.186 15 C -0.064 4.064 16 C -0.225 4.225 17 C 0.073 3.927 18 O -0.134 6.134 19 C -0.491 4.491 20 H 0.122 0.878 21 C -0.220 4.220 22 N -0.557 5.557 23 Si 0.837 3.163 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.180 1.180 27 C -0.262 4.262 28 C -0.061 4.061 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.154 0.846 34 H 0.071 0.929 35 H 0.141 0.859 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.239 0.761 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.161 0.839 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.140 0.860 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.285 -26.623 -1.764 28.251 hybrid contribution -0.140 1.541 -0.241 1.566 sum -9.425 -25.082 -2.006 26.869 Atomic orbital electron populations 1.22076 0.89940 1.05117 1.04042 1.22118 0.98357 0.96800 0.84333 0.88682 1.25650 0.71671 0.93931 0.85282 1.90471 1.34442 1.72688 1.38368 1.22361 1.06155 0.90685 1.00785 1.21911 0.99489 1.02759 0.91729 1.21767 1.02752 0.76361 0.99684 1.47428 1.62373 1.08459 1.17507 1.15950 0.78326 0.81830 0.83072 1.90891 1.60057 1.68931 1.30389 1.45538 1.60448 1.06980 1.26346 1.19752 0.96323 0.86115 0.89848 1.19507 0.97736 0.94917 1.06409 1.20867 0.97320 0.93306 0.94867 1.20431 1.00075 0.93555 1.08448 1.19981 0.94554 0.85071 0.93136 1.83948 1.51398 1.14092 1.64008 1.21814 1.05646 0.87730 1.33908 0.87807 1.26604 1.00284 0.98057 0.97017 1.70178 1.32041 1.14606 1.38891 0.84652 0.76782 0.75992 0.78846 1.18134 1.19764 1.18011 1.21253 1.00458 0.97666 1.06802 1.20946 0.97772 0.91095 0.96312 0.90842 0.88906 0.90124 0.88696 0.84636 0.92915 0.85943 0.89466 0.88091 0.76119 0.90886 0.91186 0.83896 0.86826 0.91777 0.85954 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.31 71.98 0.67 -0.79 16 2 C 0.09 1.33 3.17 44.37 0.14 1.47 16 3 H 0.10 1.69 5.69 -2.39 -0.01 1.68 16 4 C 0.36 5.86 6.18 29.56 0.18 6.04 16 5 O -0.49 -12.28 17.90 -1.45 -0.03 -12.31 16 6 C -0.16 -1.31 6.01 30.13 0.18 -1.13 16 7 C -0.12 -0.94 6.09 30.71 0.19 -0.75 16 8 C 0.12 1.31 6.07 86.34 0.52 1.84 16 9 N -0.62 -10.54 2.66 -815.64 -2.17 -12.71 16 10 C 0.71 17.20 8.30 179.06 1.49 18.68 16 11 O -0.62 -19.32 15.77 -4.00 -0.06 -19.38 16 12 N -0.74 -17.21 5.46 -482.30 -2.63 -19.85 16 13 C 0.20 5.12 5.80 85.63 0.50 5.62 16 14 C -0.18 -5.47 5.25 -19.83 -0.10 -5.58 16 15 C -0.05 -1.46 9.69 22.25 0.22 -1.25 16 16 C -0.21 -8.52 9.99 22.39 0.22 -8.29 16 17 C 0.12 5.97 6.65 22.58 0.15 6.12 16 18 O -0.23 -13.50 9.76 -22.63 -0.22 -13.72 16 19 C -0.42 -23.68 9.49 67.92 0.64 -23.04 16 20 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 21 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 22 N -0.92 -55.95 13.67 21.61 0.30 -55.65 16 23 Si 1.02 42.06 29.55 68.60 2.03 44.09 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 27 C -0.24 -10.04 9.17 22.39 0.21 -9.83 16 28 C -0.04 -1.38 9.69 22.25 0.22 -1.16 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.44 7.10 -2.39 -0.02 0.43 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.14 0.25 7.88 -2.39 -0.02 0.23 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.09 1.33 7.00 -2.39 -0.02 1.32 16 37 H 0.10 0.58 7.51 -2.39 -0.02 0.56 16 38 H 0.40 8.74 5.97 -92.71 -0.55 8.19 16 39 H 0.07 1.83 8.08 -2.39 -0.02 1.82 16 40 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 41 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 42 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 43 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 44 H 0.12 5.14 5.64 -2.91 -0.02 5.12 16 45 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -78.37 373.80 3.57 -74.80 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.48 Total: 27.54 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 5.89 Total: -12.81 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -4.51 Total: -88.21 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.31 Total: -45.41 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -78.37 3.57 -74.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916487222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.106 kcal (2) G-P(sol) polarization free energy of solvation -78.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds