Wall clock time and date at job start Tue Mar 31 2020 17:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.50817 * 2 1 4 4 C 1.53096 * 109.50506 * 239.87530 * 2 1 3 5 5 C 1.53234 * 109.43414 * 181.69469 * 4 2 1 6 6 C 1.51327 * 108.64769 * 56.17364 * 5 4 2 7 7 O 1.20761 * 121.01779 * 127.40657 * 6 5 4 8 8 C 1.51905 * 117.89179 * 307.26220 * 6 5 4 9 9 N 1.46873 * 109.50209 * 120.08329 * 2 1 3 10 10 C 1.34772 * 120.71633 * 357.00466 * 9 2 1 11 11 O 1.21589 * 120.00369 * 5.60924 * 10 9 2 12 12 N 1.34780 * 120.00021 * 185.88533 * 10 9 2 13 13 C 1.46502 * 119.99840 * 174.75094 * 12 10 9 14 14 C 1.50703 * 109.47017 * 179.97438 * 13 12 10 15 15 C 1.38305 * 119.93116 * 269.73041 * 14 13 12 16 16 C 1.38098 * 120.06733 * 179.72611 * 15 14 13 17 17 C 1.38881 * 119.92972 * 0.56692 * 16 15 14 18 18 O 1.35748 * 120.06915 * 179.68481 * 17 16 15 19 19 C 1.34836 * 117.00315 * 185.24285 * 18 17 16 20 20 H 1.08007 * 119.99422 * 354.97595 * 19 18 17 21 21 C 1.38648 * 120.00499 * 174.97805 * 19 18 17 22 22 N 1.31560 * 119.99631 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00112 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47073 * 89.99969 * 23 21 19 25 25 H 1.48498 * 109.46794 * 209.99448 * 23 21 19 26 26 H 1.48490 * 109.47142 * 329.99894 * 23 21 19 27 27 C 1.38879 * 119.86354 * 359.70361 * 17 16 15 28 28 C 1.38105 * 119.92902 * 0.02562 * 27 17 16 29 29 H 1.09006 * 109.46983 * 299.92088 * 1 2 3 30 30 H 1.09001 * 109.46651 * 59.91501 * 1 2 3 31 31 H 1.08989 * 109.47300 * 179.91727 * 1 2 3 32 32 H 1.09009 * 109.47913 * 301.68231 * 4 2 1 33 33 H 1.08998 * 109.48187 * 61.69448 * 4 2 1 34 34 H 1.08996 * 109.60819 * 175.92714 * 5 4 2 35 35 H 1.09003 * 109.60296 * 296.43354 * 5 4 2 36 36 H 1.09004 * 109.98045 * 286.92880 * 8 6 5 37 37 H 1.09004 * 109.88109 * 165.85805 * 8 6 5 38 38 H 0.97003 * 120.00168 * 354.74927 * 12 10 9 39 39 H 1.08993 * 109.47566 * 300.00039 * 13 12 10 40 40 H 1.09005 * 109.47214 * 60.00527 * 13 12 10 41 41 H 1.07996 * 119.96482 * 359.97438 * 15 14 13 42 42 H 1.08000 * 120.03983 * 180.27199 * 16 15 14 43 43 H 0.97003 * 119.99594 * 180.02562 * 22 21 19 44 44 H 1.07997 * 120.03887 * 179.97438 * 27 17 16 45 45 H 1.07997 * 119.96276 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7243 -1.2482 5 6 3.5730 -0.7604 -1.2253 6 6 4.0223 -1.4137 0.0636 7 8 4.7956 -2.3413 0.0545 8 6 3.4726 -0.8636 1.3685 9 7 2.0204 -0.6940 1.1980 10 6 1.1595 -1.1605 2.1241 11 8 -0.0386 -1.1003 1.9255 12 7 1.6264 -1.6886 3.2728 13 6 0.6922 -2.0899 4.3275 14 6 1.4633 -2.6463 5.4966 15 6 1.7438 -3.9993 5.5573 16 6 2.4552 -4.5112 6.6245 17 6 2.8787 -3.6679 7.6434 18 8 3.5726 -4.1691 8.6970 19 6 3.8589 -3.3175 9.7024 20 1 3.6102 -2.2705 9.6105 21 6 4.4725 -3.7858 10.8541 22 7 4.7750 -5.0613 10.9662 23 14 4.8685 -2.6060 12.2473 24 1 3.7180 -2.5424 13.1841 25 1 6.0723 -3.0841 12.9736 26 1 5.1298 -1.2540 11.6917 27 6 2.5905 -2.3107 7.5824 28 6 1.8837 -1.8039 6.5097 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5152 -0.8893 31 1 -0.3633 -1.0275 -0.0015 32 1 1.6538 -1.7431 -1.2615 33 1 1.7033 -0.1954 -2.1393 34 1 3.9380 -1.3377 -2.0747 35 1 3.9635 0.2560 -1.2756 36 1 3.9337 0.0988 1.5906 37 1 3.6703 -1.5650 2.1790 38 1 2.5811 -1.8031 3.4012 39 1 0.1157 -1.2234 4.6513 40 1 0.0158 -2.8532 3.9426 41 1 1.4097 -4.6553 4.7672 42 1 2.6778 -5.5671 6.6692 43 1 5.2040 -5.3889 11.7721 44 1 2.9182 -1.6523 8.3734 45 1 1.6589 -0.7486 6.4619 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916487779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:57 Heat of formation + Delta-G solvation = -45.892446 kcal Electronic energy + Delta-G solvation = -27822.474129 eV Core-core repulsion = 23806.767739 eV Total energy + Delta-G solvation = -4015.706390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.09563 -39.54544 -39.10255 -37.27299 -36.55342 -34.84211 -33.24401 -32.34726 -31.35251 -30.29375 -29.73417 -27.42582 -25.89108 -25.03579 -24.58590 -22.38404 -22.06480 -20.80086 -20.60235 -19.61374 -18.15411 -18.03282 -17.08051 -16.74372 -16.20414 -15.83144 -15.44459 -15.26502 -15.06571 -14.84226 -14.66713 -14.40394 -13.98753 -13.79799 -13.64588 -13.59200 -13.39240 -12.89869 -12.80060 -12.75212 -12.65065 -12.33179 -12.15766 -11.85800 -11.68111 -11.53288 -11.42815 -11.38668 -10.95119 -10.79872 -10.70577 -10.49782 -10.25787 -9.44184 -9.40758 -9.06436 -8.91960 -8.71167 -8.29796 -7.34376 -6.54048 -4.13000 1.39143 1.98419 2.11892 2.55703 3.05787 3.07623 3.08724 3.13405 3.52664 3.79621 3.89390 4.21770 4.35812 4.37030 4.50482 4.73313 4.78524 4.99378 5.00048 5.02669 5.08455 5.16684 5.24119 5.28067 5.42321 5.47509 5.53573 5.61966 5.65034 5.79729 5.86536 5.98752 6.03543 6.11346 6.33993 6.42911 6.57270 6.60786 6.65036 6.79392 6.94675 6.99158 7.13900 7.25992 7.33967 7.69965 7.83611 7.90580 8.49793 8.91223 9.59309 10.63458 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.002265 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.998854 B =12361.179016 C =12887.306101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.156 3.844 3 H 0.076 0.924 4 C -0.127 4.127 5 C -0.169 4.169 6 C 0.352 3.648 7 O -0.442 6.442 8 C 0.065 3.935 9 N -0.627 5.627 10 C 0.707 3.293 11 O -0.579 6.579 12 N -0.738 5.738 13 C 0.197 3.803 14 C -0.216 4.216 15 C -0.053 4.053 16 C -0.195 4.195 17 C 0.161 3.839 18 O -0.173 6.173 19 C -0.394 4.394 20 H 0.094 0.906 21 C 0.040 3.960 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.238 4.238 28 C -0.050 4.050 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.395 0.605 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.271 0.729 44 H 0.128 0.872 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.067 11.913 -21.390 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.053 3.947 3 H 0.094 0.906 4 C -0.165 4.165 5 C -0.207 4.207 6 C 0.225 3.775 7 O -0.312 6.312 8 C -0.060 4.060 9 N -0.368 5.368 10 C 0.409 3.591 11 O -0.457 6.457 12 N -0.395 5.395 13 C 0.075 3.925 14 C -0.218 4.218 15 C -0.072 4.072 16 C -0.214 4.214 17 C 0.106 3.894 18 O -0.075 6.075 19 C -0.470 4.470 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.493 5.493 23 Si 0.767 3.233 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.257 4.257 28 C -0.069 4.069 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.231 0.769 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.146 0.854 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.343 11.057 -21.263 24.356 hybrid contribution 0.855 0.607 0.865 1.359 sum -3.489 11.663 -20.398 23.754 Atomic orbital electron populations 1.22195 0.91668 1.04201 1.01104 1.21186 0.96651 0.94580 0.82328 0.90605 1.22039 0.93030 1.02636 0.98842 1.22325 0.97899 1.03308 0.97158 1.25276 0.77688 0.81600 0.92949 1.90476 1.27692 1.23540 1.89504 1.22464 0.82200 1.03570 0.97738 1.47306 1.04206 1.62074 1.23184 1.15938 0.84928 0.78281 0.79957 1.90976 1.13525 1.62751 1.78481 1.45866 1.10909 1.66769 1.15999 1.19845 0.89840 0.98806 0.84044 1.19217 1.10094 0.94129 0.98351 1.20543 0.96139 0.94124 0.96398 1.20219 1.06138 0.99384 0.95706 1.19442 0.89403 0.91767 0.88777 1.83980 1.60696 1.38321 1.24534 1.21358 1.40653 0.91231 0.93723 0.88912 1.25324 0.96370 0.96912 0.97871 1.70040 1.38017 1.13203 1.28048 0.85689 0.78435 0.79301 0.79893 1.19776 1.20184 1.19142 1.21157 1.07506 0.95625 1.01408 1.20636 0.95341 0.98057 0.92821 0.90550 0.93969 0.90602 0.90806 0.89259 0.88973 0.87995 0.87864 0.87657 0.76879 0.91693 0.91598 0.86965 0.86370 0.91859 0.85421 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 7.58 37.16 0.28 -0.96 16 2 C 0.16 1.17 3.39 -67.68 -0.23 0.94 16 3 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 4 C -0.13 -0.75 5.37 -26.56 -0.14 -0.89 16 5 C -0.17 -0.96 6.14 -27.45 -0.17 -1.13 16 6 C 0.35 3.08 6.88 -28.13 -0.19 2.89 16 7 O -0.44 -5.59 17.90 6.00 0.11 -5.48 16 8 C 0.06 0.51 6.58 -4.22 -0.03 0.48 16 9 N -0.63 -5.92 2.97 -171.55 -0.51 -6.43 16 10 C 0.71 8.89 8.21 -86.92 -0.71 8.18 16 11 O -0.58 -8.72 11.74 5.29 0.06 -8.66 16 12 N -0.74 -9.12 5.45 -66.41 -0.36 -9.48 16 13 C 0.20 2.70 5.80 -5.19 -0.03 2.67 16 14 C -0.22 -3.42 5.25 -104.57 -0.55 -3.97 16 15 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 16 C -0.20 -3.94 9.99 -39.39 -0.39 -4.33 16 17 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 18 O -0.17 -4.78 9.76 0.04 0.00 -4.78 16 19 C -0.39 -10.67 9.49 30.88 0.29 -10.38 16 20 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -24.66 13.67 55.48 0.76 -23.90 16 23 Si 0.94 19.97 29.55 -169.99 -5.02 14.95 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 27 C -0.24 -4.87 9.17 -39.39 -0.36 -5.23 16 28 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 29 H 0.08 0.87 6.70 -51.93 -0.35 0.52 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.88 6.77 -51.94 -0.35 0.52 16 32 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.11 0.90 5.83 -51.93 -0.30 0.60 16 38 H 0.39 4.50 6.03 -40.82 -0.25 4.25 16 39 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 43 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.13 2.63 5.64 -52.49 -0.30 2.34 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -32.43 369.55 -8.78 -41.21 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.02 Total: 6.81 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.36 Total: -9.80 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.11 Total: -39.82 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.17 Total: -18.92 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.43 -8.78 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916487779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.685 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds