Wall clock time and date at job start Tue Mar 31 2020 17:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.50817 * 2 1 4 4 C 1.53096 * 109.50506 * 239.87530 * 2 1 3 5 5 C 1.53234 * 109.43414 * 181.69469 * 4 2 1 6 6 C 1.51327 * 108.64769 * 56.17364 * 5 4 2 7 7 O 1.20761 * 121.01779 * 127.40657 * 6 5 4 8 8 C 1.51905 * 117.89179 * 307.26220 * 6 5 4 9 9 N 1.46873 * 109.50209 * 120.08329 * 2 1 3 10 10 C 1.34772 * 120.71633 * 357.00466 * 9 2 1 11 11 O 1.21589 * 120.00369 * 5.60924 * 10 9 2 12 12 N 1.34780 * 120.00021 * 185.88533 * 10 9 2 13 13 C 1.46502 * 119.99840 * 174.75094 * 12 10 9 14 14 C 1.50703 * 109.47017 * 179.97438 * 13 12 10 15 15 C 1.38305 * 119.93116 * 269.73041 * 14 13 12 16 16 C 1.38098 * 120.06733 * 179.72611 * 15 14 13 17 17 C 1.38881 * 119.92972 * 0.56692 * 16 15 14 18 18 O 1.35748 * 120.06915 * 179.68481 * 17 16 15 19 19 C 1.34836 * 117.00315 * 185.24285 * 18 17 16 20 20 H 1.08007 * 119.99422 * 354.97595 * 19 18 17 21 21 C 1.38648 * 120.00499 * 174.97805 * 19 18 17 22 22 N 1.31560 * 119.99631 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00112 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47073 * 89.99969 * 23 21 19 25 25 H 1.48498 * 109.46794 * 209.99448 * 23 21 19 26 26 H 1.48490 * 109.47142 * 329.99894 * 23 21 19 27 27 C 1.38879 * 119.86354 * 359.70361 * 17 16 15 28 28 C 1.38105 * 119.92902 * 0.02562 * 27 17 16 29 29 H 1.09006 * 109.46983 * 299.92088 * 1 2 3 30 30 H 1.09001 * 109.46651 * 59.91501 * 1 2 3 31 31 H 1.08989 * 109.47300 * 179.91727 * 1 2 3 32 32 H 1.09009 * 109.47913 * 301.68231 * 4 2 1 33 33 H 1.08998 * 109.48187 * 61.69448 * 4 2 1 34 34 H 1.08996 * 109.60819 * 175.92714 * 5 4 2 35 35 H 1.09003 * 109.60296 * 296.43354 * 5 4 2 36 36 H 1.09004 * 109.98045 * 286.92880 * 8 6 5 37 37 H 1.09004 * 109.88109 * 165.85805 * 8 6 5 38 38 H 0.97003 * 120.00168 * 354.74927 * 12 10 9 39 39 H 1.08993 * 109.47566 * 300.00039 * 13 12 10 40 40 H 1.09005 * 109.47214 * 60.00527 * 13 12 10 41 41 H 1.07996 * 119.96482 * 359.97438 * 15 14 13 42 42 H 1.08000 * 120.03983 * 180.27199 * 16 15 14 43 43 H 0.97003 * 119.99594 * 180.02562 * 22 21 19 44 44 H 1.07997 * 120.03887 * 179.97438 * 27 17 16 45 45 H 1.07997 * 119.96276 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7243 -1.2482 5 6 3.5730 -0.7604 -1.2253 6 6 4.0223 -1.4137 0.0636 7 8 4.7956 -2.3413 0.0545 8 6 3.4726 -0.8636 1.3685 9 7 2.0204 -0.6940 1.1980 10 6 1.1595 -1.1605 2.1241 11 8 -0.0386 -1.1003 1.9255 12 7 1.6264 -1.6886 3.2728 13 6 0.6922 -2.0899 4.3275 14 6 1.4633 -2.6463 5.4966 15 6 1.7438 -3.9993 5.5573 16 6 2.4552 -4.5112 6.6245 17 6 2.8787 -3.6679 7.6434 18 8 3.5726 -4.1691 8.6970 19 6 3.8589 -3.3175 9.7024 20 1 3.6102 -2.2705 9.6105 21 6 4.4725 -3.7858 10.8541 22 7 4.7750 -5.0613 10.9662 23 14 4.8685 -2.6060 12.2473 24 1 3.7180 -2.5424 13.1841 25 1 6.0723 -3.0841 12.9736 26 1 5.1298 -1.2540 11.6917 27 6 2.5905 -2.3107 7.5824 28 6 1.8837 -1.8039 6.5097 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5152 -0.8893 31 1 -0.3633 -1.0275 -0.0015 32 1 1.6538 -1.7431 -1.2615 33 1 1.7033 -0.1954 -2.1393 34 1 3.9380 -1.3377 -2.0747 35 1 3.9635 0.2560 -1.2756 36 1 3.9337 0.0988 1.5906 37 1 3.6703 -1.5650 2.1790 38 1 2.5811 -1.8031 3.4012 39 1 0.1157 -1.2234 4.6513 40 1 0.0158 -2.8532 3.9426 41 1 1.4097 -4.6553 4.7672 42 1 2.6778 -5.5671 6.6692 43 1 5.2040 -5.3889 11.7721 44 1 2.9182 -1.6523 8.3734 45 1 1.6589 -0.7486 6.4619 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916487779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:54 Heat of formation + Delta-G solvation = -66.839178 kcal Electronic energy + Delta-G solvation = -27823.382447 eV Core-core repulsion = 23806.767739 eV Total energy + Delta-G solvation = -4016.614709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.91223 -40.85525 -40.28973 -38.66589 -37.57824 -35.93979 -34.39602 -33.88053 -32.07715 -31.84066 -31.07463 -28.24015 -27.57858 -26.24226 -25.41837 -23.65828 -23.17231 -22.06188 -21.63825 -20.37103 -19.87940 -19.03316 -18.70755 -17.62372 -17.08467 -16.53068 -16.52182 -16.29440 -16.16630 -16.05207 -15.89989 -15.72903 -15.52298 -15.22457 -14.85563 -14.60130 -14.39248 -14.19474 -14.12033 -13.64039 -13.57852 -13.32780 -13.26705 -13.02237 -13.00440 -12.53020 -12.48746 -12.36560 -12.23072 -12.12124 -12.10203 -12.02279 -11.21148 -10.94738 -10.82572 -10.33272 -10.07238 -9.82401 -9.47636 -9.02403 -8.48868 -6.17279 0.50807 0.56556 0.72546 1.35638 1.43860 1.52938 1.68533 2.11326 2.16789 2.71586 2.91171 2.98250 3.19641 3.47779 3.61767 3.80903 3.84731 3.90286 4.02875 4.15739 4.16758 4.29005 4.45553 4.46745 4.52746 4.54110 4.56024 4.73706 4.79928 4.83131 4.93678 5.01079 5.03190 5.08497 5.13652 5.25612 5.29807 5.32471 5.51054 5.52153 5.67856 5.74484 5.75701 5.82069 6.00718 6.15037 6.32487 6.89626 6.95898 7.54690 7.75136 8.74077 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.002265 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.998854 B =12361.179016 C =12887.306101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.150 3.850 3 H 0.107 0.893 4 C -0.119 4.119 5 C -0.162 4.162 6 C 0.354 3.646 7 O -0.490 6.490 8 C 0.062 3.938 9 N -0.622 5.622 10 C 0.703 3.297 11 O -0.607 6.607 12 N -0.738 5.738 13 C 0.205 3.795 14 C -0.183 4.183 15 C -0.046 4.046 16 C -0.206 4.206 17 C 0.123 3.877 18 O -0.229 6.229 19 C -0.414 4.414 20 H 0.105 0.895 21 C -0.023 4.023 22 N -0.920 5.920 23 Si 1.019 2.981 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.251 1.251 27 C -0.243 4.243 28 C -0.042 4.042 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.401 0.599 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.142 0.858 42 H 0.113 0.887 43 H 0.273 0.727 44 H 0.122 0.878 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 15.352 -24.005 28.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.125 0.875 4 C -0.157 4.157 5 C -0.199 4.199 6 C 0.230 3.770 7 O -0.364 6.364 8 C -0.062 4.062 9 N -0.362 5.362 10 C 0.405 3.595 11 O -0.487 6.487 12 N -0.395 5.395 13 C 0.081 3.919 14 C -0.184 4.184 15 C -0.064 4.064 16 C -0.225 4.225 17 C 0.072 3.928 18 O -0.136 6.136 19 C -0.490 4.490 20 H 0.122 0.878 21 C -0.220 4.220 22 N -0.558 5.558 23 Si 0.838 3.162 24 H -0.189 1.189 25 H -0.197 1.197 26 H -0.174 1.174 27 C -0.262 4.262 28 C -0.061 4.061 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.113 0.887 38 H 0.238 0.762 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.160 0.840 42 H 0.131 0.869 43 H 0.082 0.918 44 H 0.140 0.860 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.085 14.542 -23.958 28.484 hybrid contribution 0.855 -0.380 1.273 1.580 sum -4.229 14.162 -22.685 27.076 Atomic orbital electron populations 1.22026 0.93053 1.02269 1.01110 1.21460 0.95537 0.96146 0.82009 0.87534 1.21996 0.92917 1.01614 0.99198 1.22355 0.97561 1.04800 0.95207 1.25800 0.76284 0.80466 0.94487 1.90475 1.30103 1.25627 1.90152 1.22620 0.81277 1.05015 0.97242 1.47355 1.04511 1.61311 1.23042 1.16062 0.84908 0.78267 0.80291 1.90986 1.14851 1.63777 1.79083 1.45658 1.10925 1.67036 1.15906 1.19712 0.89622 0.99161 0.83376 1.19523 1.07182 0.93501 0.98234 1.20866 0.94597 0.95178 0.95771 1.20429 1.06730 0.99222 0.96158 1.19984 0.90571 0.93526 0.88741 1.83952 1.63805 1.39614 1.26180 1.21852 1.40915 0.91916 0.94269 0.87775 1.26608 0.96062 0.98828 1.00542 1.70188 1.40685 1.15667 1.29226 0.84581 0.78328 0.77279 0.76017 1.18895 1.19737 1.17409 1.21257 1.07971 0.94485 1.02472 1.20948 0.93764 0.99907 0.91463 0.92941 0.91460 0.93499 0.92977 0.86273 0.88856 0.84607 0.84568 0.88656 0.76224 0.90854 0.91408 0.83981 0.86916 0.91809 0.86002 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 7.58 71.98 0.55 -1.52 16 2 C 0.15 1.72 3.39 44.95 0.15 1.87 16 3 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 4 C -0.12 -0.97 5.37 30.70 0.16 -0.81 16 5 C -0.16 -1.25 6.14 30.13 0.18 -1.06 16 6 C 0.35 5.38 6.88 29.69 0.20 5.59 16 7 O -0.49 -11.99 17.90 -1.45 -0.03 -12.02 16 8 C 0.06 0.80 6.58 85.89 0.56 1.37 16 9 N -0.62 -10.01 2.97 -814.93 -2.42 -12.43 16 10 C 0.70 16.12 8.21 179.05 1.47 17.59 16 11 O -0.61 -17.34 11.74 -4.00 -0.05 -17.39 16 12 N -0.74 -16.27 5.45 -482.29 -2.63 -18.90 16 13 C 0.20 4.96 5.80 85.63 0.50 5.46 16 14 C -0.18 -5.30 5.25 -19.83 -0.10 -5.41 16 15 C -0.05 -1.46 9.69 22.25 0.22 -1.25 16 16 C -0.21 -8.47 9.99 22.39 0.22 -8.24 16 17 C 0.12 5.89 6.65 22.58 0.15 6.04 16 18 O -0.23 -13.51 9.76 -22.78 -0.22 -13.73 16 19 C -0.41 -23.50 9.49 67.92 0.64 -22.86 16 20 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 21 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 22 N -0.92 -55.88 13.67 21.61 0.30 -55.58 16 23 Si 1.02 41.96 29.55 68.60 2.03 43.98 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 26 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 27 C -0.24 -9.92 9.17 22.39 0.21 -9.72 16 28 C -0.04 -1.33 9.69 22.25 0.22 -1.12 16 29 H 0.05 1.11 6.70 -2.38 -0.02 1.09 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 1.03 6.77 -2.39 -0.02 1.02 16 32 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.14 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.10 1.44 5.83 -2.39 -0.01 1.43 16 38 H 0.40 8.08 6.03 -92.71 -0.56 7.52 16 39 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 40 H 0.07 1.69 8.08 -2.38 -0.02 1.67 16 41 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 42 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.12 5.07 5.64 -2.91 -0.02 5.05 16 45 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -77.44 369.55 3.25 -74.19 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.47 Total: 26.75 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 5.80 Total: -14.87 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -4.76 Total: -86.91 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.30 Total: -43.14 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -77.44 3.25 -74.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916487779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.351 kcal (2) G-P(sol) polarization free energy of solvation -77.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds