Wall clock time and date at job start Tue Mar 31 2020 17:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.50395 * 2 1 4 4 C 1.53103 * 109.53726 * 120.09719 * 2 1 3 5 5 C 1.53235 * 109.43005 * 178.32639 * 4 2 1 6 6 C 1.51324 * 108.65124 * 303.82516 * 5 4 2 7 7 O 1.20759 * 121.02457 * 232.59434 * 6 5 4 8 8 C 1.51100 * 118.02434 * 52.44454 * 6 5 4 9 9 N 1.46875 * 109.50438 * 239.91422 * 2 1 3 10 10 C 1.34777 * 120.71519 * 2.90769 * 9 2 1 11 11 O 1.21591 * 120.00029 * 5.47672 * 10 9 2 12 12 N 1.34776 * 120.00069 * 185.48118 * 10 9 2 13 13 C 1.46500 * 120.00155 * 185.10594 * 12 10 9 14 14 C 1.50696 * 109.47215 * 179.97438 * 13 12 10 15 15 C 1.38307 * 119.93128 * 90.00032 * 14 13 12 16 16 C 1.38096 * 120.06791 * 179.72470 * 15 14 13 17 17 C 1.38882 * 119.93383 * 0.25438 * 16 15 14 18 18 O 1.35744 * 120.06854 * 179.97438 * 17 16 15 19 19 C 1.34830 * 117.00329 * 354.38739 * 18 17 16 20 20 H 1.07997 * 119.99658 * 354.62681 * 19 18 17 21 21 C 1.38655 * 120.00283 * 174.63019 * 19 18 17 22 22 N 1.31557 * 119.99841 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00036 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46883 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46979 * 120.00106 * 23 21 19 26 26 H 1.48497 * 109.47127 * 240.00014 * 23 21 19 27 27 C 1.38874 * 119.85837 * 0.02562 * 17 16 15 28 28 C 1.38098 * 119.93659 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.46910 * 180.08530 * 1 2 3 30 30 H 1.09001 * 109.47014 * 300.09060 * 1 2 3 31 31 H 1.09003 * 109.46774 * 60.08396 * 1 2 3 32 32 H 1.08991 * 109.48217 * 298.31536 * 4 2 1 33 33 H 1.09004 * 109.47681 * 58.33678 * 4 2 1 34 34 H 1.08999 * 109.60531 * 63.56981 * 5 4 2 35 35 H 1.08997 * 109.60681 * 184.07332 * 5 4 2 36 36 H 1.09007 * 109.77398 * 194.48600 * 8 6 5 37 37 H 1.08991 * 109.66804 * 73.68145 * 8 6 5 38 38 H 0.97004 * 119.99949 * 5.10522 * 12 10 9 39 39 H 1.09003 * 109.46550 * 59.99829 * 13 12 10 40 40 H 1.08998 * 109.47100 * 300.00007 * 13 12 10 41 41 H 1.07999 * 119.95975 * 359.97438 * 15 14 13 42 42 H 1.07998 * 120.03299 * 180.27923 * 16 15 14 43 43 H 0.97004 * 120.00024 * 179.97438 * 22 21 19 44 44 H 1.08005 * 120.03657 * 180.02562 * 27 17 16 45 45 H 1.07997 * 119.96821 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0420 -0.7236 1.2483 5 6 3.5738 -0.7587 1.2249 6 6 4.0232 -1.4122 -0.0639 7 8 4.7970 -2.3393 -0.0548 8 6 3.4722 -0.8726 -1.3632 9 7 2.0204 -0.6940 -1.1979 10 6 1.1595 -1.1621 -2.1232 11 8 -0.0290 -0.9258 -2.0225 12 7 1.6158 -1.8923 -3.1600 13 6 0.6983 -2.3064 -4.2245 14 6 1.4531 -3.1048 -5.2559 15 6 1.5552 -4.4780 -5.1264 16 6 2.2414 -5.2131 -6.0729 17 6 2.8337 -4.5715 -7.1528 18 8 3.5093 -5.2914 -8.0846 19 6 3.6682 -6.6084 -7.8437 20 1 3.3429 -7.0285 -6.9034 21 6 4.2494 -7.4235 -8.8030 22 7 4.6453 -6.9119 -9.9485 23 14 4.4702 -9.2481 -8.4690 24 1 3.9461 -9.5708 -7.1176 25 1 3.7264 -10.0315 -9.4879 26 1 5.9131 -9.5926 -8.5361 27 6 2.7344 -3.1919 -7.2769 28 6 2.0469 -2.4623 -6.3271 29 1 -0.3633 -1.0277 0.0015 30 1 -0.3633 0.5152 0.8892 31 1 -0.3633 0.5126 -0.8908 32 1 1.7043 -0.1945 2.1394 33 1 1.6552 -1.7426 1.2621 34 1 3.9638 0.2579 1.2748 35 1 3.9395 -1.3355 2.0744 36 1 3.6682 -1.5801 -2.1690 37 1 3.9392 0.0858 -1.5898 38 1 2.5518 -2.1438 -3.2015 39 1 0.2652 -1.4234 -4.6945 40 1 -0.0970 -2.9194 -3.8006 41 1 1.0944 -4.9763 -4.2863 42 1 2.3169 -6.2859 -5.9736 43 1 5.0522 -7.4821 -10.6196 44 1 3.1936 -2.6901 -8.1158 45 1 1.9689 -1.3895 -6.4233 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916487780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:04 Heat of formation + Delta-G solvation = -45.547704 kcal Electronic energy + Delta-G solvation = -27886.698970 eV Core-core repulsion = 23871.007529 eV Total energy + Delta-G solvation = -4015.691441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.11425 -39.55459 -39.09931 -37.27259 -36.55613 -34.84275 -33.24427 -32.34395 -31.36010 -30.28813 -29.73802 -27.45810 -25.89121 -25.03055 -24.58619 -22.37773 -22.05722 -20.80415 -20.60505 -19.59507 -18.16168 -18.05662 -17.06810 -16.81584 -16.13981 -15.81149 -15.46270 -15.30169 -15.02196 -14.78075 -14.67830 -14.42525 -14.01379 -13.83817 -13.69622 -13.55345 -13.38923 -12.84306 -12.81130 -12.76693 -12.60383 -12.34119 -12.13483 -11.84807 -11.66765 -11.54885 -11.46332 -11.38595 -10.95874 -10.77381 -10.69008 -10.47203 -10.25598 -9.46082 -9.38619 -9.07727 -8.91723 -8.71229 -8.29342 -7.34061 -6.53970 -4.12563 1.38955 1.98724 2.12324 2.55896 3.05623 3.07952 3.09767 3.15340 3.53998 3.78949 3.90125 4.21683 4.35577 4.37588 4.50591 4.73593 4.78298 4.99010 5.01778 5.03791 5.08552 5.15314 5.23884 5.27937 5.43089 5.48116 5.53414 5.61155 5.65844 5.80554 5.85794 5.98634 6.03241 6.12277 6.34700 6.42438 6.58034 6.61874 6.64839 6.79735 6.95646 6.99584 7.13862 7.26809 7.34297 7.70468 7.83638 7.90938 8.49953 8.91642 9.59656 10.63615 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.002394 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.612033 B =11692.695040 C =12570.129100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.156 3.844 3 H 0.077 0.923 4 C -0.128 4.128 5 C -0.169 4.169 6 C 0.351 3.649 7 O -0.441 6.441 8 C 0.064 3.936 9 N -0.626 5.626 10 C 0.707 3.293 11 O -0.579 6.579 12 N -0.739 5.739 13 C 0.197 3.803 14 C -0.216 4.216 15 C -0.050 4.050 16 C -0.236 4.236 17 C 0.161 3.839 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.040 3.960 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.196 4.196 28 C -0.054 4.054 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.395 0.605 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.271 0.729 44 H 0.118 0.882 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.857 14.246 20.137 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.053 3.947 3 H 0.095 0.905 4 C -0.166 4.166 5 C -0.207 4.207 6 C 0.224 3.776 7 O -0.311 6.311 8 C -0.060 4.060 9 N -0.367 5.367 10 C 0.410 3.590 11 O -0.457 6.457 12 N -0.396 5.396 13 C 0.075 3.925 14 C -0.218 4.218 15 C -0.068 4.068 16 C -0.256 4.256 17 C 0.106 3.894 18 O -0.075 6.075 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.493 5.493 23 Si 0.766 3.234 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.215 4.215 28 C -0.073 4.073 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.232 0.768 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.126 0.874 42 H 0.146 0.854 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.111 13.877 19.730 24.469 hybrid contribution 0.728 -1.095 0.104 1.319 sum -3.383 12.782 19.834 23.837 Atomic orbital electron populations 1.22236 0.91707 1.03794 1.01770 1.21182 0.96630 0.94699 0.82222 0.90539 1.22052 0.93081 1.02599 0.98893 1.22320 0.97854 1.03318 0.97204 1.25096 0.77902 0.81642 0.93004 1.90486 1.27696 1.23418 1.89529 1.22305 0.82262 1.03670 0.97765 1.47309 1.04171 1.61822 1.23419 1.15936 0.84791 0.78781 0.79525 1.90960 1.14235 1.63647 1.76896 1.45886 1.13635 1.56476 1.23600 1.19851 0.90329 0.97381 0.84977 1.19223 1.09394 0.93798 0.99381 1.20654 0.96160 0.92972 0.97058 1.21170 1.05878 1.00772 0.97751 1.19454 0.89552 0.91508 0.88901 1.83990 1.61886 1.21768 1.39894 1.21402 1.41610 0.80789 1.03041 0.88891 1.25324 0.96201 1.00374 0.94580 1.70045 1.37133 1.36351 1.05783 0.85630 0.78500 0.80390 0.78840 1.19016 1.20049 1.20044 1.20206 1.07535 0.91444 1.02335 1.20526 0.95370 0.98260 0.93100 0.91566 0.93900 0.89379 0.89228 0.90869 0.87998 0.88963 0.87642 0.87828 0.76848 0.91648 0.91613 0.87419 0.85417 0.91911 0.86378 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 7.60 37.16 0.28 -0.99 16 2 C 0.16 1.17 3.39 -67.67 -0.23 0.94 16 3 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.13 -0.76 5.38 -26.56 -0.14 -0.90 16 5 C -0.17 -0.97 6.14 -27.46 -0.17 -1.14 16 6 C 0.35 3.09 6.86 -28.53 -0.20 2.89 16 7 O -0.44 -5.64 17.90 6.00 0.11 -5.53 16 8 C 0.06 0.51 6.62 -4.61 -0.03 0.48 16 9 N -0.63 -5.92 2.98 -172.02 -0.51 -6.44 16 10 C 0.71 8.91 8.18 -86.92 -0.71 8.20 16 11 O -0.58 -8.70 11.80 5.29 0.06 -8.64 16 12 N -0.74 -9.19 5.45 -66.42 -0.36 -9.55 16 13 C 0.20 2.70 5.80 -5.20 -0.03 2.67 16 14 C -0.22 -3.44 5.25 -104.57 -0.55 -3.99 16 15 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 16 C -0.24 -4.93 9.13 -39.40 -0.36 -5.29 16 17 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 18 O -0.17 -4.80 9.76 0.07 0.00 -4.80 16 19 C -0.39 -10.71 9.44 30.89 0.29 -10.41 16 20 H 0.09 2.35 5.29 -52.49 -0.28 2.08 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -24.71 13.67 55.48 0.76 -23.95 16 23 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 27 C -0.20 -3.91 9.99 -39.40 -0.39 -4.31 16 28 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 29 H 0.07 0.76 7.11 -51.93 -0.37 0.39 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 1.02 6.35 -51.93 -0.33 0.69 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.11 0.91 5.66 -51.93 -0.29 0.62 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.39 4.60 5.99 -40.82 -0.24 4.35 16 39 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.13 2.70 5.71 -52.49 -0.30 2.40 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 45 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 369.49 15.07 5.57 5.57 Total: -1.00 -32.49 369.49 -8.78 -41.27 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.02 Total: 6.84 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -3.36 Total: -9.92 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -0.12 Total: -39.94 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.17 Total: -18.97 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.49 -8.78 -41.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916487780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.275 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds