Wall clock time and date at job start Tue Mar 31 2020 17:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.50395 * 2 1 4 4 C 1.53103 * 109.53726 * 120.09719 * 2 1 3 5 5 C 1.53235 * 109.43005 * 178.32639 * 4 2 1 6 6 C 1.51324 * 108.65124 * 303.82516 * 5 4 2 7 7 O 1.20759 * 121.02457 * 232.59434 * 6 5 4 8 8 C 1.51100 * 118.02434 * 52.44454 * 6 5 4 9 9 N 1.46875 * 109.50438 * 239.91422 * 2 1 3 10 10 C 1.34777 * 120.71519 * 2.90769 * 9 2 1 11 11 O 1.21591 * 120.00029 * 5.47672 * 10 9 2 12 12 N 1.34776 * 120.00069 * 185.48118 * 10 9 2 13 13 C 1.46500 * 120.00155 * 185.10594 * 12 10 9 14 14 C 1.50696 * 109.47215 * 179.97438 * 13 12 10 15 15 C 1.38307 * 119.93128 * 90.00032 * 14 13 12 16 16 C 1.38096 * 120.06791 * 179.72470 * 15 14 13 17 17 C 1.38882 * 119.93383 * 0.25438 * 16 15 14 18 18 O 1.35744 * 120.06854 * 179.97438 * 17 16 15 19 19 C 1.34830 * 117.00329 * 354.38739 * 18 17 16 20 20 H 1.07997 * 119.99658 * 354.62681 * 19 18 17 21 21 C 1.38655 * 120.00283 * 174.63019 * 19 18 17 22 22 N 1.31557 * 119.99841 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00036 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46883 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46979 * 120.00106 * 23 21 19 26 26 H 1.48497 * 109.47127 * 240.00014 * 23 21 19 27 27 C 1.38874 * 119.85837 * 0.02562 * 17 16 15 28 28 C 1.38098 * 119.93659 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.46910 * 180.08530 * 1 2 3 30 30 H 1.09001 * 109.47014 * 300.09060 * 1 2 3 31 31 H 1.09003 * 109.46774 * 60.08396 * 1 2 3 32 32 H 1.08991 * 109.48217 * 298.31536 * 4 2 1 33 33 H 1.09004 * 109.47681 * 58.33678 * 4 2 1 34 34 H 1.08999 * 109.60531 * 63.56981 * 5 4 2 35 35 H 1.08997 * 109.60681 * 184.07332 * 5 4 2 36 36 H 1.09007 * 109.77398 * 194.48600 * 8 6 5 37 37 H 1.08991 * 109.66804 * 73.68145 * 8 6 5 38 38 H 0.97004 * 119.99949 * 5.10522 * 12 10 9 39 39 H 1.09003 * 109.46550 * 59.99829 * 13 12 10 40 40 H 1.08998 * 109.47100 * 300.00007 * 13 12 10 41 41 H 1.07999 * 119.95975 * 359.97438 * 15 14 13 42 42 H 1.07998 * 120.03299 * 180.27923 * 16 15 14 43 43 H 0.97004 * 120.00024 * 179.97438 * 22 21 19 44 44 H 1.08005 * 120.03657 * 180.02562 * 27 17 16 45 45 H 1.07997 * 119.96821 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0420 -0.7236 1.2483 5 6 3.5738 -0.7587 1.2249 6 6 4.0232 -1.4122 -0.0639 7 8 4.7970 -2.3393 -0.0548 8 6 3.4722 -0.8726 -1.3632 9 7 2.0204 -0.6940 -1.1979 10 6 1.1595 -1.1621 -2.1232 11 8 -0.0290 -0.9258 -2.0225 12 7 1.6158 -1.8923 -3.1600 13 6 0.6983 -2.3064 -4.2245 14 6 1.4531 -3.1048 -5.2559 15 6 1.5552 -4.4780 -5.1264 16 6 2.2414 -5.2131 -6.0729 17 6 2.8337 -4.5715 -7.1528 18 8 3.5093 -5.2914 -8.0846 19 6 3.6682 -6.6084 -7.8437 20 1 3.3429 -7.0285 -6.9034 21 6 4.2494 -7.4235 -8.8030 22 7 4.6453 -6.9119 -9.9485 23 14 4.4702 -9.2481 -8.4690 24 1 3.9461 -9.5708 -7.1176 25 1 3.7264 -10.0315 -9.4879 26 1 5.9131 -9.5926 -8.5361 27 6 2.7344 -3.1919 -7.2769 28 6 2.0469 -2.4623 -6.3271 29 1 -0.3633 -1.0277 0.0015 30 1 -0.3633 0.5152 0.8892 31 1 -0.3633 0.5126 -0.8908 32 1 1.7043 -0.1945 2.1394 33 1 1.6552 -1.7426 1.2621 34 1 3.9638 0.2579 1.2748 35 1 3.9395 -1.3355 2.0744 36 1 3.6682 -1.5801 -2.1690 37 1 3.9392 0.0858 -1.5898 38 1 2.5518 -2.1438 -3.2015 39 1 0.2652 -1.4234 -4.6945 40 1 -0.0970 -2.9194 -3.8006 41 1 1.0944 -4.9763 -4.2863 42 1 2.3169 -6.2859 -5.9736 43 1 5.0522 -7.4821 -10.6196 44 1 3.1936 -2.6901 -8.1158 45 1 1.9689 -1.3895 -6.4233 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916487780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:01 Heat of formation + Delta-G solvation = -66.559899 kcal Electronic energy + Delta-G solvation = -27887.610127 eV Core-core repulsion = 23871.007529 eV Total energy + Delta-G solvation = -4016.602598 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.93101 -40.86057 -40.30569 -38.67052 -37.58573 -35.94457 -34.40532 -33.88548 -32.08678 -31.84410 -31.08577 -28.27237 -27.59142 -26.25048 -25.42117 -23.65854 -23.17052 -22.06826 -21.64538 -20.35885 -19.88451 -19.04363 -18.74891 -17.66341 -17.05833 -16.54716 -16.53455 -16.35679 -16.10010 -16.03717 -15.84447 -15.77507 -15.52981 -15.21279 -14.89048 -14.66328 -14.39429 -14.25912 -14.06670 -13.67111 -13.53504 -13.33604 -13.25053 -13.02682 -12.99953 -12.56056 -12.47642 -12.33444 -12.23880 -12.15268 -12.10354 -12.04236 -11.24553 -10.94497 -10.84338 -10.31261 -10.08849 -9.82754 -9.48200 -9.02880 -8.50475 -6.18381 0.50440 0.56129 0.71932 1.34331 1.41097 1.52062 1.68411 2.10698 2.15319 2.70463 2.91768 2.97776 3.19597 3.46345 3.61187 3.80730 3.84484 3.90148 4.02187 4.15167 4.17063 4.28470 4.45464 4.47391 4.51943 4.53749 4.55657 4.73370 4.80645 4.83092 4.92712 5.01252 5.03237 5.07842 5.12094 5.24870 5.28606 5.32152 5.50430 5.52406 5.67705 5.73992 5.76458 5.81305 5.99624 6.14776 6.32305 6.89020 6.94655 7.54523 7.73708 8.72595 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.002394 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.612033 B =11692.695040 C =12570.129100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.151 3.849 3 H 0.107 0.893 4 C -0.120 4.120 5 C -0.162 4.162 6 C 0.353 3.647 7 O -0.490 6.490 8 C 0.062 3.938 9 N -0.622 5.622 10 C 0.704 3.296 11 O -0.606 6.606 12 N -0.739 5.739 13 C 0.205 3.795 14 C -0.183 4.183 15 C -0.048 4.048 16 C -0.245 4.245 17 C 0.122 3.878 18 O -0.228 6.228 19 C -0.413 4.413 20 H 0.101 0.899 21 C -0.021 4.021 22 N -0.918 5.918 23 Si 1.017 2.983 24 H -0.253 1.253 25 H -0.268 1.268 26 H -0.268 1.268 27 C -0.203 4.203 28 C -0.041 4.041 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.051 0.949 34 H 0.136 0.864 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.138 0.862 38 H 0.400 0.600 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.134 0.866 42 H 0.118 0.882 43 H 0.273 0.727 44 H 0.118 0.882 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 16.373 23.456 28.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.049 3.951 3 H 0.125 0.875 4 C -0.158 4.158 5 C -0.199 4.199 6 C 0.229 3.771 7 O -0.364 6.364 8 C -0.062 4.062 9 N -0.362 5.362 10 C 0.406 3.594 11 O -0.486 6.486 12 N -0.396 5.396 13 C 0.081 3.919 14 C -0.184 4.184 15 C -0.067 4.067 16 C -0.264 4.264 17 C 0.071 3.929 18 O -0.134 6.134 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.219 4.219 22 N -0.556 5.556 23 Si 0.837 3.163 24 H -0.176 1.176 25 H -0.193 1.193 26 H -0.193 1.193 27 C -0.223 4.223 28 C -0.059 4.059 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.138 0.862 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.155 0.845 38 H 0.237 0.763 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.152 0.848 42 H 0.135 0.865 43 H 0.083 0.917 44 H 0.136 0.864 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.877 16.063 23.120 28.571 hybrid contribution 0.760 -1.416 -0.659 1.737 sum -4.118 14.647 22.461 27.129 Atomic orbital electron populations 1.22069 0.93084 1.01890 1.01760 1.21452 0.95521 0.96264 0.81888 0.87495 1.22009 0.92950 1.01589 0.99244 1.22352 0.97533 1.04821 0.95241 1.25619 0.76471 0.80480 0.94548 1.90484 1.30144 1.25544 1.90184 1.22457 0.81351 1.05114 0.97245 1.47358 1.04468 1.61064 1.23265 1.16052 0.84775 0.78738 0.79862 1.90971 1.15508 1.64564 1.77579 1.45683 1.13616 1.56783 1.23542 1.19722 0.90044 0.97417 0.84694 1.19539 1.06592 0.93364 0.98954 1.20931 0.95237 0.93683 0.96816 1.21233 1.06449 1.00672 0.98045 1.20009 0.90759 0.92713 0.89374 1.83952 1.65045 1.22193 1.42206 1.21831 1.42047 0.81279 1.03700 0.88164 1.26561 0.95702 1.05442 0.94171 1.70179 1.39744 1.38353 1.07283 0.84548 0.78698 0.73833 0.79270 1.17609 1.19300 1.19305 1.20466 1.07978 0.90481 1.03330 1.20897 0.93388 0.99956 0.91694 0.94380 0.91390 0.91826 0.86246 0.93017 0.84584 0.88889 0.88656 0.84501 0.76296 0.90560 0.91584 0.84816 0.86461 0.91747 0.86442 0.83123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 7.60 71.98 0.55 -1.57 16 2 C 0.15 1.73 3.39 44.96 0.15 1.88 16 3 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 4 C -0.12 -0.98 5.38 30.71 0.17 -0.82 16 5 C -0.16 -1.27 6.14 30.12 0.19 -1.08 16 6 C 0.35 5.39 6.86 29.43 0.20 5.60 16 7 O -0.49 -12.11 17.90 -1.45 -0.03 -12.13 16 8 C 0.06 0.80 6.62 85.63 0.57 1.37 16 9 N -0.62 -9.99 2.98 -816.41 -2.44 -12.43 16 10 C 0.70 16.13 8.18 179.05 1.46 17.60 16 11 O -0.61 -17.23 11.80 -4.00 -0.05 -17.27 16 12 N -0.74 -16.46 5.45 -482.30 -2.63 -19.08 16 13 C 0.20 4.98 5.80 85.63 0.50 5.48 16 14 C -0.18 -5.35 5.25 -19.83 -0.10 -5.45 16 15 C -0.05 -1.60 9.69 22.25 0.22 -1.39 16 16 C -0.24 -10.37 9.13 22.39 0.20 -10.17 16 17 C 0.12 5.90 6.65 22.58 0.15 6.05 16 18 O -0.23 -13.46 9.76 -22.67 -0.22 -13.68 16 19 C -0.41 -23.74 9.44 67.92 0.64 -23.10 16 20 H 0.10 5.33 5.29 -2.91 -0.02 5.31 16 21 C -0.02 -1.17 5.49 84.83 0.47 -0.71 16 22 N -0.92 -55.79 13.67 21.61 0.30 -55.49 16 23 Si 1.02 42.67 29.55 68.60 2.03 44.70 16 24 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 25 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 27 C -0.20 -8.15 9.99 22.39 0.22 -7.93 16 28 C -0.04 -1.26 9.69 22.25 0.22 -1.04 16 29 H 0.04 0.82 7.11 -2.39 -0.02 0.81 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 1.36 6.35 -2.39 -0.02 1.35 16 32 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 1.45 5.66 -2.38 -0.01 1.43 16 37 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.40 8.32 5.99 -92.71 -0.55 7.76 16 39 H 0.08 1.78 8.09 -2.39 -0.02 1.76 16 40 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 41 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 42 H 0.12 5.14 5.71 -2.91 -0.02 5.13 16 43 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 45 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -77.50 369.49 3.23 -74.27 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.47 Total: 26.40 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 5.79 Total: -15.29 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -4.77 Total: -87.00 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -0.29 Total: -43.08 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -77.50 3.23 -74.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916487780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.711 kcal (2) G-P(sol) polarization free energy of solvation -77.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds