Wall clock time and date at job start Tue Mar 31 2020 17:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47232 * 2 1 4 4 C 1.53007 * 109.46759 * 119.99831 * 2 1 3 5 5 C 1.53005 * 117.49695 * 299.99758 * 4 2 1 6 6 C 1.53001 * 60.02989 * 252.50166 * 5 4 2 7 7 N 1.46492 * 109.47310 * 239.99624 * 2 1 3 8 8 C 1.46501 * 120.00335 * 299.99990 * 7 2 1 9 9 C 1.34778 * 120.00017 * 120.00313 * 7 2 1 10 10 O 1.21363 * 119.99948 * 356.49154 * 9 7 2 11 11 C 1.49352 * 120.00102 * 176.49895 * 9 7 2 12 12 O 1.21377 * 120.00381 * 5.95569 * 11 9 7 13 13 N 1.34778 * 120.00117 * 185.96312 * 11 9 7 14 14 C 1.39719 * 120.00248 * 175.33110 * 13 11 9 15 15 C 1.39016 * 120.03946 * 214.83688 * 14 13 11 16 16 C 1.38149 * 120.05913 * 179.74610 * 15 14 13 17 17 C 1.38181 * 120.14219 * 0.54913 * 16 15 14 18 18 C 1.38916 * 120.08540 * 359.70572 * 17 16 15 19 19 O 1.35749 * 120.03482 * 179.97438 * 18 17 16 20 20 C 1.34831 * 116.99837 * 5.59154 * 19 18 17 21 21 H 1.08007 * 119.99976 * 5.32694 * 20 19 18 22 22 C 1.38654 * 120.00141 * 185.32978 * 20 19 18 23 23 N 1.31552 * 119.99941 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99947 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47359 * 89.99751 * 24 22 20 26 26 H 1.48495 * 109.47250 * 210.00233 * 24 22 20 27 27 H 1.48503 * 109.47083 * 330.00193 * 24 22 20 28 28 C 1.38757 * 119.93695 * 0.02562 * 18 17 16 29 29 H 1.09005 * 109.46821 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47112 * 300.00033 * 1 2 3 31 31 H 1.09001 * 109.46452 * 60.00687 * 1 2 3 32 32 H 1.08994 * 115.56172 * 85.69376 * 4 2 1 33 33 H 1.08996 * 117.49629 * 0.02562 * 5 4 2 34 34 H 1.08997 * 117.49484 * 145.00087 * 5 4 2 35 35 H 1.09005 * 117.49659 * 107.50815 * 6 5 4 36 36 H 1.08996 * 117.50091 * 252.51663 * 6 5 4 37 37 H 1.09000 * 109.46854 * 95.97403 * 8 7 2 38 38 H 1.09002 * 109.47577 * 215.97530 * 8 7 2 39 39 H 1.09004 * 109.46917 * 335.97848 * 8 7 2 40 40 H 0.97003 * 119.99534 * 355.32483 * 13 11 9 41 41 H 1.07994 * 119.97506 * 359.97438 * 15 14 13 42 42 H 1.07994 * 119.92943 * 180.27830 * 16 15 14 43 43 H 1.07997 * 119.95710 * 179.72091 * 17 16 15 44 44 H 0.97001 * 120.00047 * 179.97438 * 23 22 20 45 45 H 1.07998 * 120.07610 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6357 -0.1494 2.6097 6 6 3.0744 0.0054 2.1126 7 7 2.0184 -0.6906 -1.1960 8 6 1.6646 -2.0932 -1.4279 9 6 2.7934 -0.0357 -2.0832 10 8 3.0342 1.1432 -1.9245 11 6 3.3556 -0.7606 -3.2618 12 8 3.0287 -1.9089 -3.4806 13 7 4.2261 -0.1398 -4.0823 14 6 4.8269 -0.8465 -5.1272 15 6 6.1355 -0.5604 -5.4990 16 6 6.7316 -1.2625 -6.5287 17 6 6.0260 -2.2430 -7.1995 18 6 4.7162 -2.5303 -6.8365 19 8 4.0238 -3.4934 -7.4965 20 6 4.6998 -4.2126 -8.4151 21 1 5.7635 -4.0698 -8.5368 22 6 4.0296 -5.1355 -9.2035 23 7 4.6891 -5.8368 -10.1000 24 14 2.1899 -5.3819 -8.9935 25 1 1.4601 -4.4541 -9.8945 26 1 1.8361 -6.7833 -9.3342 27 1 1.8108 -5.1042 -7.5848 28 6 4.1160 -1.8310 -5.7991 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8901 32 1 2.1271 -1.8044 1.1644 33 1 1.0061 0.7403 2.6145 34 1 1.4564 -0.8564 3.4196 35 1 3.3916 0.9973 1.7905 36 1 3.8415 -0.6000 2.5953 37 1 0.7984 -2.1452 -2.0875 38 1 2.5058 -2.6084 -1.8916 39 1 1.4262 -2.5697 -0.4769 40 1 4.4355 0.7977 -3.9474 41 1 6.6878 0.2089 -4.9801 42 1 7.7498 -1.0415 -6.8128 43 1 6.4934 -2.7870 -8.0070 44 1 4.2203 -6.4827 -10.6513 45 1 3.0980 -2.0528 -5.5147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918407786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:06 Heat of formation + Delta-G solvation = -20.015307 kcal Electronic energy + Delta-G solvation = -28025.873369 eV Core-core repulsion = 24011.289095 eV Total energy + Delta-G solvation = -4014.584273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.19439 -39.69343 -38.73373 -37.92425 -36.87651 -35.62872 -34.15109 -32.39480 -31.13521 -29.81012 -28.86729 -27.22639 -25.78734 -25.19312 -23.89540 -22.65834 -22.25827 -21.23631 -20.35513 -19.71623 -18.32622 -17.93899 -17.43337 -17.25849 -16.35231 -16.08643 -15.51925 -15.28567 -15.06707 -14.97749 -14.62609 -14.14839 -13.99576 -13.82021 -13.66845 -13.40719 -13.09176 -12.94773 -12.77354 -12.71871 -12.43300 -12.30480 -12.27371 -11.82113 -11.74558 -11.51918 -11.23487 -11.12999 -11.00668 -10.85555 -10.81255 -10.43355 -10.21044 -9.94610 -9.56173 -9.24462 -8.98493 -8.88093 -7.90625 -7.37920 -6.42763 -4.09256 1.17491 1.99074 2.16701 2.20091 3.11339 3.22468 3.25197 3.27035 3.43199 3.47529 4.13262 4.23446 4.25238 4.45174 4.48639 4.56083 4.78714 4.88067 4.94689 4.95026 5.00727 5.08141 5.23973 5.32850 5.42382 5.50827 5.51702 5.56688 5.65538 5.69492 5.73303 5.76406 5.88204 6.02532 6.05270 6.12923 6.20085 6.38360 6.62072 6.82537 6.85681 7.06250 7.26659 7.29117 7.49376 7.63476 7.77563 7.95298 8.03043 8.92492 9.54719 10.64581 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016296 B = 0.002708 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.811654 B =10337.855308 C =11518.654283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.163 3.837 3 H 0.104 0.896 4 C -0.169 4.169 5 C -0.169 4.169 6 C -0.176 4.176 7 N -0.577 5.577 8 C 0.060 3.940 9 C 0.513 3.487 10 O -0.525 6.525 11 C 0.501 3.499 12 O -0.487 6.487 13 N -0.636 5.636 14 C 0.166 3.834 15 C -0.221 4.221 16 C -0.059 4.059 17 C -0.228 4.228 18 C 0.172 3.828 19 O -0.212 6.212 20 C -0.389 4.389 21 H 0.107 0.893 22 C 0.064 3.936 23 N -0.878 5.878 24 Si 0.904 3.096 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.257 1.257 28 C -0.185 4.185 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.418 0.582 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.280 0.720 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.382 11.850 21.878 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.060 3.940 3 H 0.122 0.878 4 C -0.188 4.188 5 C -0.207 4.207 6 C -0.213 4.213 7 N -0.310 5.310 8 C -0.082 4.082 9 C 0.295 3.705 10 O -0.402 6.402 11 C 0.283 3.717 12 O -0.361 6.361 13 N -0.282 5.282 14 C 0.073 3.927 15 C -0.242 4.242 16 C -0.078 4.078 17 C -0.247 4.247 18 C 0.119 3.881 19 O -0.117 6.117 20 C -0.464 4.464 21 H 0.125 0.875 22 C -0.139 4.139 23 N -0.515 5.515 24 Si 0.729 3.271 25 H -0.199 1.199 26 H -0.207 1.207 27 H -0.181 1.181 28 C -0.206 4.206 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.128 0.872 39 H 0.086 0.914 40 H 0.255 0.745 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.153 0.847 44 H 0.090 0.910 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.774 11.384 21.682 25.160 hybrid contribution -0.500 0.122 -0.014 0.515 sum -6.273 11.506 21.668 25.323 Atomic orbital electron populations 1.22099 0.93939 1.02927 1.02623 1.20749 0.94377 0.97088 0.81753 0.87826 1.22645 1.04905 0.99939 0.91339 1.22939 0.98269 1.03202 0.96285 1.23062 0.92540 1.02190 1.03478 1.47707 1.48282 1.13633 1.21398 1.22457 1.04094 0.79953 1.01698 1.20074 0.79619 0.86878 0.83900 1.90736 1.59067 1.15111 1.75272 1.20098 0.80806 0.86867 0.83958 1.90746 1.57128 1.16816 1.71374 1.43024 1.42488 1.14654 1.28057 1.17153 0.91732 0.95186 0.88593 1.20381 0.93461 1.06333 1.03976 1.20581 0.98579 0.94390 0.94258 1.21349 0.95692 1.02839 1.04850 1.18846 0.90562 0.87898 0.90831 1.83594 1.38425 1.41238 1.48399 1.20778 0.94680 1.17448 1.13497 0.87530 1.24461 1.00195 0.95055 0.94209 1.69643 1.37142 1.23972 1.20789 0.86201 0.83381 0.77405 0.80121 1.19891 1.20742 1.18134 1.20144 1.01548 1.01051 0.97859 0.91804 0.91043 0.91996 0.87152 0.88516 0.88522 0.88496 0.88671 0.91829 0.87167 0.91404 0.74467 0.86882 0.86516 0.84681 0.91014 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.04 37.16 0.34 -0.81 16 2 C 0.16 1.45 2.86 -67.93 -0.19 1.25 16 3 H 0.10 1.05 6.66 -51.93 -0.35 0.70 16 4 C -0.17 -1.28 5.13 -90.58 -0.46 -1.74 16 5 C -0.17 -1.01 9.73 -26.73 -0.26 -1.27 16 6 C -0.18 -1.27 10.18 -26.69 -0.27 -1.55 16 7 N -0.58 -6.32 2.76 -174.47 -0.48 -6.80 16 8 C 0.06 0.61 8.51 59.85 0.51 1.12 16 9 C 0.51 6.79 7.73 -11.63 -0.09 6.70 16 10 O -0.53 -7.54 15.82 5.49 0.09 -7.45 16 11 C 0.50 7.50 7.61 -11.63 -0.09 7.41 16 12 O -0.49 -8.31 10.57 5.47 0.06 -8.26 16 13 N -0.64 -9.31 5.32 -10.31 -0.05 -9.37 16 14 C 0.17 2.92 6.29 -83.77 -0.53 2.39 16 15 C -0.22 -3.59 9.97 -39.33 -0.39 -3.98 16 16 C -0.06 -1.03 10.03 -39.63 -0.40 -1.43 16 17 C -0.23 -4.83 9.13 -39.35 -0.36 -5.19 16 18 C 0.17 4.01 6.64 -39.14 -0.26 3.75 16 19 O -0.21 -5.65 8.58 0.05 0.00 -5.65 16 20 C -0.39 -10.92 9.90 30.89 0.31 -10.62 16 21 H 0.11 3.03 5.52 -52.48 -0.29 2.75 16 22 C 0.06 1.80 5.49 -17.52 -0.10 1.71 16 23 N -0.88 -25.26 13.96 55.48 0.77 -24.48 16 24 Si 0.90 21.81 28.62 -169.99 -4.86 16.95 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 28 C -0.18 -3.87 8.64 -39.19 -0.34 -4.21 16 29 H 0.06 0.43 7.67 -51.93 -0.40 0.04 16 30 H 0.07 0.41 7.29 -51.93 -0.38 0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.11 0.83 6.67 -51.93 -0.35 0.49 16 33 H 0.10 0.51 7.61 -51.93 -0.39 0.11 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.11 1.36 5.36 -51.93 -0.28 1.08 16 39 H 0.07 0.52 6.51 -51.93 -0.34 0.19 16 40 H 0.42 5.08 8.30 -40.82 -0.34 4.74 16 41 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.14 2.99 5.70 -52.49 -0.30 2.69 16 44 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.13 2.90 6.22 -52.49 -0.33 2.57 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -31.02 372.41 -7.28 -38.30 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -5.82 Total: 7.61 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -2.59 Total: -6.46 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.24 Total: -40.65 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: 0.15 Total: -21.36 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.02 -7.28 -38.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918407786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.283 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds