Wall clock time and date at job start Tue Mar 31 2020 17:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47232 * 2 1 4 4 C 1.53007 * 109.46759 * 119.99831 * 2 1 3 5 5 C 1.53005 * 117.49695 * 299.99758 * 4 2 1 6 6 C 1.53001 * 60.02989 * 252.50166 * 5 4 2 7 7 N 1.46492 * 109.47310 * 239.99624 * 2 1 3 8 8 C 1.46501 * 120.00335 * 299.99990 * 7 2 1 9 9 C 1.34778 * 120.00017 * 120.00313 * 7 2 1 10 10 O 1.21363 * 119.99948 * 356.49154 * 9 7 2 11 11 C 1.49352 * 120.00102 * 176.49895 * 9 7 2 12 12 O 1.21377 * 120.00381 * 5.95569 * 11 9 7 13 13 N 1.34778 * 120.00117 * 185.96312 * 11 9 7 14 14 C 1.39719 * 120.00248 * 175.33110 * 13 11 9 15 15 C 1.39016 * 120.03946 * 214.83688 * 14 13 11 16 16 C 1.38149 * 120.05913 * 179.74610 * 15 14 13 17 17 C 1.38181 * 120.14219 * 0.54913 * 16 15 14 18 18 C 1.38916 * 120.08540 * 359.70572 * 17 16 15 19 19 O 1.35749 * 120.03482 * 179.97438 * 18 17 16 20 20 C 1.34831 * 116.99837 * 5.59154 * 19 18 17 21 21 H 1.08007 * 119.99976 * 5.32694 * 20 19 18 22 22 C 1.38654 * 120.00141 * 185.32978 * 20 19 18 23 23 N 1.31552 * 119.99941 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99947 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47359 * 89.99751 * 24 22 20 26 26 H 1.48495 * 109.47250 * 210.00233 * 24 22 20 27 27 H 1.48503 * 109.47083 * 330.00193 * 24 22 20 28 28 C 1.38757 * 119.93695 * 0.02562 * 18 17 16 29 29 H 1.09005 * 109.46821 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47112 * 300.00033 * 1 2 3 31 31 H 1.09001 * 109.46452 * 60.00687 * 1 2 3 32 32 H 1.08994 * 115.56172 * 85.69376 * 4 2 1 33 33 H 1.08996 * 117.49629 * 0.02562 * 5 4 2 34 34 H 1.08997 * 117.49484 * 145.00087 * 5 4 2 35 35 H 1.09005 * 117.49659 * 107.50815 * 6 5 4 36 36 H 1.08996 * 117.50091 * 252.51663 * 6 5 4 37 37 H 1.09000 * 109.46854 * 95.97403 * 8 7 2 38 38 H 1.09002 * 109.47577 * 215.97530 * 8 7 2 39 39 H 1.09004 * 109.46917 * 335.97848 * 8 7 2 40 40 H 0.97003 * 119.99534 * 355.32483 * 13 11 9 41 41 H 1.07994 * 119.97506 * 359.97438 * 15 14 13 42 42 H 1.07994 * 119.92943 * 180.27830 * 16 15 14 43 43 H 1.07997 * 119.95710 * 179.72091 * 17 16 15 44 44 H 0.97001 * 120.00047 * 179.97438 * 23 22 20 45 45 H 1.07998 * 120.07610 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6357 -0.1494 2.6097 6 6 3.0744 0.0054 2.1126 7 7 2.0184 -0.6906 -1.1960 8 6 1.6646 -2.0932 -1.4279 9 6 2.7934 -0.0357 -2.0832 10 8 3.0342 1.1432 -1.9245 11 6 3.3556 -0.7606 -3.2618 12 8 3.0287 -1.9089 -3.4806 13 7 4.2261 -0.1398 -4.0823 14 6 4.8269 -0.8465 -5.1272 15 6 6.1355 -0.5604 -5.4990 16 6 6.7316 -1.2625 -6.5287 17 6 6.0260 -2.2430 -7.1995 18 6 4.7162 -2.5303 -6.8365 19 8 4.0238 -3.4934 -7.4965 20 6 4.6998 -4.2126 -8.4151 21 1 5.7635 -4.0698 -8.5368 22 6 4.0296 -5.1355 -9.2035 23 7 4.6891 -5.8368 -10.1000 24 14 2.1899 -5.3819 -8.9935 25 1 1.4601 -4.4541 -9.8945 26 1 1.8361 -6.7833 -9.3342 27 1 1.8108 -5.1042 -7.5848 28 6 4.1160 -1.8310 -5.7991 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8901 32 1 2.1271 -1.8044 1.1644 33 1 1.0061 0.7403 2.6145 34 1 1.4564 -0.8564 3.4196 35 1 3.3916 0.9973 1.7905 36 1 3.8415 -0.6000 2.5953 37 1 0.7984 -2.1452 -2.0875 38 1 2.5058 -2.6084 -1.8916 39 1 1.4262 -2.5697 -0.4769 40 1 4.4355 0.7977 -3.9474 41 1 6.6878 0.2089 -4.9801 42 1 7.7498 -1.0415 -6.8128 43 1 6.4934 -2.7870 -8.0070 44 1 4.2203 -6.4827 -10.6513 45 1 3.0980 -2.0528 -5.5147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918407786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:05 Heat of formation + Delta-G solvation = -39.157586 kcal Electronic energy + Delta-G solvation = -28026.703440 eV Core-core repulsion = 24011.289095 eV Total energy + Delta-G solvation = -4015.414345 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.34830 -41.03590 -40.12456 -38.77625 -38.41547 -36.58323 -35.45377 -34.44233 -31.87075 -31.38554 -30.39079 -28.12991 -27.30976 -26.61919 -24.85859 -23.64672 -23.16237 -22.76217 -21.49145 -20.53312 -19.94668 -19.51654 -18.73495 -18.41292 -17.42257 -17.21066 -16.94413 -16.79773 -16.33005 -16.08356 -15.81343 -15.62486 -15.43501 -15.08788 -14.89737 -14.44849 -14.33365 -14.25669 -14.20050 -13.83343 -13.59961 -13.38445 -13.29167 -12.99761 -12.87569 -12.77261 -12.53760 -12.47644 -12.32884 -12.01252 -11.89545 -11.50610 -11.37635 -11.32298 -10.99535 -10.88783 -10.46422 -9.91352 -9.46092 -9.01331 -8.50795 -6.22979 -0.05956 0.56782 0.63287 1.08195 1.29947 1.33517 1.51129 1.95628 2.23899 2.27659 2.74096 2.84823 2.97356 3.08938 3.25119 3.57901 3.91042 4.01354 4.07417 4.14386 4.24179 4.31057 4.31601 4.34806 4.39694 4.49779 4.61529 4.65786 4.72671 4.77388 4.80953 4.90768 4.99441 5.01666 5.10957 5.23357 5.25595 5.27284 5.31859 5.35569 5.36959 5.64553 5.74268 5.83602 5.86712 6.07312 6.17091 6.56157 6.78966 6.83934 7.58193 8.60515 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016296 B = 0.002708 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.811654 B =10337.855308 C =11518.654283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 H 0.092 0.908 4 C -0.178 4.178 5 C -0.151 4.151 6 C -0.187 4.187 7 N -0.569 5.569 8 C 0.061 3.939 9 C 0.515 3.485 10 O -0.538 6.538 11 C 0.499 3.501 12 O -0.510 6.510 13 N -0.628 5.628 14 C 0.174 3.826 15 C -0.190 4.190 16 C -0.051 4.051 17 C -0.242 4.242 18 C 0.136 3.864 19 O -0.244 6.244 20 C -0.397 4.397 21 H 0.087 0.913 22 C 0.013 3.987 23 N -0.919 5.919 24 Si 0.964 3.036 25 H -0.266 1.266 26 H -0.264 1.264 27 H -0.268 1.268 28 C -0.195 4.195 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.433 0.567 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.116 0.884 44 H 0.285 0.715 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.775 13.873 24.791 28.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.059 3.941 3 H 0.110 0.890 4 C -0.196 4.196 5 C -0.188 4.188 6 C -0.224 4.224 7 N -0.301 5.301 8 C -0.080 4.080 9 C 0.297 3.703 10 O -0.417 6.417 11 C 0.282 3.718 12 O -0.385 6.385 13 N -0.275 5.275 14 C 0.080 3.920 15 C -0.211 4.211 16 C -0.069 4.069 17 C -0.262 4.262 18 C 0.086 3.914 19 O -0.152 6.152 20 C -0.473 4.473 21 H 0.104 0.896 22 C -0.185 4.185 23 N -0.560 5.560 24 Si 0.787 3.213 25 H -0.191 1.191 26 H -0.189 1.189 27 H -0.193 1.193 28 C -0.217 4.217 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.273 0.727 41 H 0.179 0.821 42 H 0.175 0.825 43 H 0.134 0.866 44 H 0.095 0.905 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.165 13.454 24.646 28.748 hybrid contribution -0.246 -0.254 -0.651 0.740 sum -6.411 13.201 23.996 28.127 Atomic orbital electron populations 1.22086 0.92432 1.03525 1.03094 1.20926 0.95485 0.96381 0.81300 0.89013 1.22591 1.05809 0.99840 0.91406 1.23033 0.97080 1.03437 0.95254 1.23106 0.93474 1.01871 1.03930 1.47849 1.47003 1.13871 1.21351 1.22424 1.03015 0.79484 1.03091 1.19713 0.80235 0.86630 0.83730 1.90733 1.60015 1.15364 1.75546 1.20537 0.80287 0.86645 0.84329 1.90767 1.57736 1.17982 1.71985 1.42960 1.42299 1.15202 1.27070 1.17256 0.92192 0.94055 0.88471 1.20931 0.92472 1.05474 1.02177 1.21012 1.00023 0.92487 0.93383 1.21411 0.95292 1.04180 1.05273 1.19316 0.91770 0.88513 0.91775 1.83537 1.38974 1.43165 1.49497 1.20736 0.94191 1.18296 1.14106 0.89560 1.25200 1.04289 0.94935 0.94111 1.69713 1.38723 1.25305 1.22232 0.85306 0.78489 0.78202 0.79290 1.19085 1.18897 1.19300 1.20181 1.01447 1.02158 0.97879 0.91121 0.89066 0.93052 0.86992 0.87571 0.87203 0.89213 0.88369 0.91936 0.89296 0.88571 0.72666 0.82052 0.82517 0.86587 0.90529 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.04 71.98 0.65 -1.21 16 2 C 0.16 2.55 2.86 45.00 0.13 2.68 16 3 H 0.09 1.71 6.66 -2.39 -0.02 1.70 16 4 C -0.18 -2.27 5.13 -10.77 -0.06 -2.32 16 5 C -0.15 -1.35 9.73 30.60 0.30 -1.05 16 6 C -0.19 -2.34 10.18 30.62 0.31 -2.03 16 7 N -0.57 -11.68 2.76 -824.26 -2.28 -13.96 16 8 C 0.06 1.18 8.51 127.77 1.09 2.27 16 9 C 0.52 13.00 7.73 87.24 0.67 13.68 16 10 O -0.54 -14.63 15.82 -3.29 -0.05 -14.68 16 11 C 0.50 14.45 7.61 87.24 0.66 15.12 16 12 O -0.51 -17.44 10.57 -3.33 -0.04 -17.47 16 13 N -0.63 -17.04 5.32 -304.89 -1.62 -18.67 16 14 C 0.17 5.78 6.29 38.20 0.24 6.02 16 15 C -0.19 -5.42 9.97 22.44 0.22 -5.20 16 16 C -0.05 -1.62 10.03 22.23 0.22 -1.40 16 17 C -0.24 -10.41 9.13 22.42 0.20 -10.20 16 18 C 0.14 6.58 6.64 22.56 0.15 6.73 16 19 O -0.24 -13.72 8.58 -22.74 -0.20 -13.92 16 20 C -0.40 -23.60 9.90 67.92 0.67 -22.93 16 21 H 0.09 5.28 5.52 -2.91 -0.02 5.27 16 22 C 0.01 0.79 5.49 84.83 0.47 1.25 16 23 N -0.92 -55.00 13.96 21.61 0.30 -54.70 16 24 Si 0.96 46.51 28.62 68.60 1.96 48.47 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 28 C -0.20 -8.25 8.64 22.52 0.19 -8.06 16 29 H 0.07 0.77 7.67 -2.38 -0.02 0.75 16 30 H 0.09 0.76 7.29 -2.39 -0.02 0.74 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.11 1.41 6.67 -2.39 -0.02 1.39 16 33 H 0.11 0.77 7.61 -2.39 -0.02 0.75 16 34 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 1.25 8.05 -2.38 -0.02 1.23 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 2.17 5.36 -2.46 -0.01 2.16 16 39 H 0.10 1.29 6.51 -2.39 -0.02 1.27 16 40 H 0.43 9.21 8.30 -92.71 -0.77 8.45 16 41 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 42 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 43 H 0.12 5.41 5.70 -2.91 -0.02 5.40 16 44 H 0.29 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.12 5.40 6.22 -2.91 -0.02 5.38 16 Total: -1.00 -71.24 372.41 4.49 -66.75 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.27 Total: 24.83 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 6.13 Total: -6.67 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -3.60 Total: -87.32 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -0.28 Total: -46.07 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.96 Total: 48.47 kcal Total: -71.24 4.49 -66.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918407786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.591 kcal (2) G-P(sol) polarization free energy of solvation -71.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds