Wall clock time and date at job start Tue Mar 31 2020 18:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47005 * 2 1 4 4 C 1.50699 * 109.47308 * 240.00034 * 2 1 3 5 5 H 1.08001 * 119.99912 * 275.10670 * 4 2 1 6 6 C 1.37881 * 120.00013 * 95.10123 * 4 2 1 7 7 N 1.31503 * 120.00109 * 184.91060 * 6 4 2 8 8 Si 1.86806 * 119.99722 * 4.91259 * 6 4 2 9 9 H 1.48498 * 109.46846 * 84.82151 * 8 6 4 10 10 H 1.48503 * 109.46958 * 204.81617 * 8 6 4 11 11 H 1.48496 * 109.47336 * 324.82259 * 8 6 4 12 12 C 1.50695 * 109.47179 * 119.99856 * 2 1 3 13 13 O 1.21288 * 120.00107 * 119.99944 * 12 2 1 14 14 N 1.34780 * 120.00492 * 300.00205 * 12 2 1 15 15 C 1.46497 * 120.00282 * 179.97438 * 14 12 2 16 16 C 1.53005 * 109.46792 * 180.02562 * 15 14 12 17 17 N 1.46497 * 109.46792 * 180.02562 * 16 15 14 18 18 C 1.42472 * 113.50688 * 89.99800 * 17 16 15 19 19 C 1.49749 * 118.95819 * 182.97544 * 18 17 16 20 20 C 1.40452 * 112.93707 * 183.13099 * 19 18 17 21 21 C 1.37394 * 121.48707 * 177.29813 * 20 19 18 22 22 C 1.38353 * 118.95425 * 359.50916 * 21 20 19 23 23 C 1.37040 * 119.40711 * 1.45822 * 22 21 20 24 24 C 1.34643 * 127.10619 * 2.69647 * 19 18 17 25 25 O 1.36533 * 132.49448 * 9.04638 * 24 19 18 26 26 C 1.41355 * 121.81055 * 314.07260 * 25 24 19 27 27 C 1.27006 * 113.44486 * 270.00772 * 17 16 15 28 28 O 1.21280 * 113.57980 * 13.11428 * 27 17 16 29 29 H 1.09000 * 109.47449 * 55.07275 * 1 2 3 30 30 H 1.09003 * 109.47268 * 175.07202 * 1 2 3 31 31 H 1.08995 * 109.47229 * 295.07256 * 1 2 3 32 32 H 0.97006 * 120.00640 * 180.02562 * 7 6 4 33 33 H 0.97002 * 119.99234 * 359.97438 * 14 12 2 34 34 H 1.08996 * 109.47404 * 60.00227 * 15 14 12 35 35 H 1.08997 * 109.47161 * 299.99648 * 15 14 12 36 36 H 1.08996 * 109.47171 * 59.99826 * 16 15 14 37 37 H 1.08997 * 109.46769 * 299.99630 * 16 15 14 38 38 H 1.08998 * 107.53195 * 60.57648 * 18 17 16 39 39 H 1.09006 * 107.52846 * 305.37162 * 18 17 16 40 40 H 1.08000 * 119.25211 * 357.24980 * 20 19 18 41 41 H 1.08001 * 120.52511 * 179.53087 * 21 20 19 42 42 H 1.07997 * 120.29742 * 181.47843 * 22 21 20 43 43 H 1.07997 * 119.12679 * 180.23013 * 23 22 21 44 44 H 1.09004 * 109.25259 * 179.47448 * 26 25 24 45 45 H 1.09000 * 109.25157 * 298.90292 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1339 -1.7856 -1.2296 6 6 2.3623 0.0123 -2.3574 7 7 2.7081 -0.6127 -3.4615 8 14 2.3181 1.8794 -2.3156 9 1 3.6038 2.3930 -1.7786 10 1 2.1126 2.4005 -3.6909 11 1 1.2029 2.3288 -1.4441 12 6 2.0323 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1946 -0.9409 3.6507 16 6 1.6842 -0.2199 4.9000 17 7 2.1726 -0.9105 6.0961 18 6 3.4285 -0.4237 6.5603 19 6 4.0737 -1.0884 7.7369 20 6 5.2695 -0.4652 8.1298 21 6 5.9780 -0.8977 9.2247 22 6 5.4918 -1.9653 9.9581 23 6 4.3355 -2.5840 9.5603 24 6 3.6227 -2.1631 8.4109 25 8 2.6050 -3.0413 8.1719 26 6 1.3182 -2.6031 7.7844 27 6 1.3899 -1.8218 6.5084 28 8 0.5273 -2.1187 5.7092 29 1 -0.3634 0.5884 -0.8425 30 1 -0.3634 -1.0239 -0.0883 31 1 -0.3633 0.4355 0.9308 32 1 2.9406 -0.1043 -4.2543 33 1 1.1493 0.5389 2.5435 34 1 3.2846 -0.9413 3.6510 35 1 1.8309 -1.9684 3.6506 36 1 0.5942 -0.2199 4.8996 37 1 2.0476 0.8077 4.9003 38 1 3.3011 0.6302 6.8077 39 1 4.1297 -0.4776 5.7274 40 1 5.6408 0.3724 7.5580 41 1 6.8998 -0.4117 9.5085 42 1 6.0186 -2.3079 10.8364 43 1 3.9580 -3.4145 10.1383 44 1 0.6720 -3.4689 7.6398 45 1 0.9019 -1.9718 8.5695 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927591028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:49 Heat of formation + Delta-G solvation = -43.407979 kcal Electronic energy + Delta-G solvation = -28133.530710 eV Core-core repulsion = 24117.932054 eV Total energy + Delta-G solvation = -4015.598656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.99308 -40.08277 -38.80307 -38.09884 -36.41459 -34.34217 -33.60377 -32.38799 -31.29705 -31.12541 -29.49697 -27.66486 -27.24801 -25.21099 -23.84964 -22.98941 -22.35786 -21.84205 -20.47537 -19.28473 -17.91867 -17.67107 -17.24512 -17.02675 -16.78237 -16.14370 -15.89127 -15.41377 -15.19919 -14.99492 -14.78360 -14.57415 -14.34585 -14.04793 -13.92742 -13.50021 -13.39718 -12.95643 -12.73502 -12.56297 -12.41048 -12.22918 -12.08409 -11.96426 -11.70786 -11.48314 -11.31466 -11.16280 -11.02767 -10.72998 -10.23229 -9.94490 -9.79287 -9.59533 -9.13847 -9.07341 -8.85403 -8.65430 -8.51630 -8.45423 -6.03441 -4.02383 0.78142 0.83157 2.13465 2.42548 2.95907 3.18839 3.25793 3.31738 3.34785 3.69498 3.74358 3.94321 4.11074 4.40495 4.42734 4.50388 4.58875 4.73434 4.78141 4.86198 4.88473 4.93142 5.00563 5.03301 5.25464 5.27162 5.34326 5.45087 5.56698 5.76808 5.86247 5.88832 5.97265 6.02402 6.19690 6.24588 6.28175 6.43968 6.57735 6.86926 7.00863 7.02409 7.20919 7.23063 7.59063 7.77182 8.19049 8.58540 9.12925 9.21293 9.56058 11.10017 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.002429 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.779046 B =11523.110398 C =12161.269312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.003 4.003 3 H 0.054 0.946 4 C -0.494 4.494 5 H 0.086 0.914 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.264 1.264 12 C 0.519 3.481 13 O -0.529 6.529 14 N -0.746 5.746 15 C 0.112 3.888 16 C 0.086 3.914 17 N -0.560 5.560 18 C 0.145 3.855 19 C -0.131 4.131 20 C -0.093 4.093 21 C -0.129 4.129 22 C -0.099 4.099 23 C -0.136 4.136 24 C 0.120 3.880 25 O -0.312 6.312 26 C 0.073 3.927 27 C 0.467 3.533 28 O -0.554 6.554 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.026 0.974 32 H 0.264 0.736 33 H 0.393 0.607 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.147 0.853 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.924 4.419 31.800 32.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.025 4.025 3 H 0.072 0.928 4 C -0.532 4.532 5 H 0.104 0.896 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.700 3.300 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.189 1.189 12 C 0.308 3.692 13 O -0.402 6.402 14 N -0.402 5.402 15 C -0.013 4.013 16 C -0.036 4.036 17 N -0.288 5.288 18 C 0.022 3.978 19 C -0.132 4.132 20 C -0.112 4.112 21 C -0.148 4.148 22 C -0.117 4.117 23 C -0.155 4.155 24 C 0.076 3.924 25 O -0.227 6.227 26 C -0.004 4.004 27 C 0.253 3.747 28 O -0.435 6.435 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.227 0.773 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.164 0.836 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.116 3.304 31.176 31.422 hybrid contribution -0.168 1.635 -0.021 1.644 sum 1.948 4.939 31.156 31.605 Atomic orbital electron populations 1.21946 0.96728 1.01454 0.99014 1.19341 0.94094 0.96860 0.92241 0.92836 1.20762 1.42809 0.96220 0.93385 0.89643 1.25041 0.94743 0.98020 0.95346 1.69884 1.46139 1.35653 1.01673 0.86944 0.78907 0.86755 0.77433 1.20188 1.21290 1.18918 1.21774 0.79040 0.84586 0.83839 1.90590 1.36975 1.26200 1.86456 1.46186 1.55842 1.32654 1.05522 1.21350 0.98630 0.97739 0.83620 1.21954 1.02567 0.95297 0.83784 1.44800 1.20090 1.35281 1.28634 1.19475 0.84753 0.97677 0.95921 1.18821 0.97926 0.98309 0.98143 1.21174 0.93075 0.99759 0.97188 1.21039 1.00277 0.97624 0.95818 1.20951 0.95392 0.95584 0.99750 1.21690 0.96726 1.01790 0.95246 1.18199 0.89191 0.91459 0.93523 1.85912 1.18168 1.33101 1.85498 1.22934 0.84391 1.00963 0.92126 1.19408 0.83204 0.81220 0.90845 1.90876 1.39173 1.63630 1.49801 0.92734 0.92876 0.95465 0.92577 0.77323 0.92370 0.90936 0.87879 0.89816 0.89837 0.89103 0.85000 0.85100 0.85177 0.85006 0.83588 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.12 37.16 0.34 -2.40 16 2 C 0.00 -0.08 2.30 -92.93 -0.21 -0.30 16 3 H 0.05 1.21 5.29 -51.93 -0.27 0.94 16 4 C -0.49 -14.49 8.36 -34.44 -0.29 -14.78 16 5 H 0.09 2.86 7.61 -52.49 -0.40 2.46 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 7 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 8 Si 0.87 21.05 26.99 -169.99 -4.59 16.46 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.26 -5.85 6.82 56.52 0.39 -5.46 16 12 C 0.52 11.91 7.15 -10.99 -0.08 11.83 16 13 O -0.53 -14.51 15.77 5.55 0.09 -14.42 16 14 N -0.75 -12.75 5.42 -60.30 -0.33 -13.07 16 15 C 0.11 1.73 5.78 -4.04 -0.02 1.71 16 16 C 0.09 0.96 4.82 -4.04 -0.02 0.94 16 17 N -0.56 -5.92 2.64 -182.06 -0.48 -6.40 16 18 C 0.14 1.17 5.08 -7.77 -0.04 1.13 16 19 C -0.13 -1.09 5.87 -105.52 -0.62 -1.71 16 20 C -0.09 -0.61 9.41 -39.06 -0.37 -0.98 16 21 C -0.13 -0.76 10.08 -39.85 -0.40 -1.16 16 22 C -0.10 -0.61 10.04 -39.97 -0.40 -1.01 16 23 C -0.14 -1.04 9.55 -38.72 -0.37 -1.41 16 24 C 0.12 1.12 6.39 -39.56 -0.25 0.87 16 25 O -0.31 -3.14 9.53 -21.31 -0.20 -3.34 16 26 C 0.07 0.65 6.91 35.57 0.25 0.90 16 27 C 0.47 5.59 7.28 -14.71 -0.11 5.48 16 28 O -0.55 -8.65 14.08 5.56 0.08 -8.57 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.03 0.44 7.43 -51.93 -0.39 0.06 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.39 5.39 7.83 -40.82 -0.32 5.07 16 34 H 0.06 0.92 7.73 -51.93 -0.40 0.52 16 35 H 0.07 1.37 7.36 -51.93 -0.38 0.99 16 36 H 0.10 1.23 6.87 -51.93 -0.36 0.87 16 37 H 0.08 0.67 7.80 -51.93 -0.41 0.27 16 38 H 0.08 0.48 8.03 -51.93 -0.42 0.06 16 39 H 0.09 0.74 7.64 -51.93 -0.40 0.35 16 40 H 0.13 0.59 7.94 -52.49 -0.42 0.17 16 41 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 42 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 43 H 0.13 0.86 8.02 -52.49 -0.42 0.43 16 44 H 0.15 1.16 7.99 -51.93 -0.42 0.75 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -38.09 369.43 -8.04 -46.13 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.26 Total: 3.78 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.69 Total: 1.07 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.03 Total: -46.69 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.04 Total: -26.33 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.59 Total: 16.46 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.09 -8.04 -46.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927591028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.726 kcal (2) G-P(sol) polarization free energy of solvation -38.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds