Wall clock time and date at job start Tue Mar 31 2020 18:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47005 * 2 1 4 4 C 1.50699 * 109.47308 * 240.00034 * 2 1 3 5 5 H 1.08001 * 119.99912 * 275.10670 * 4 2 1 6 6 C 1.37881 * 120.00013 * 95.10123 * 4 2 1 7 7 N 1.31503 * 120.00109 * 184.91060 * 6 4 2 8 8 Si 1.86806 * 119.99722 * 4.91259 * 6 4 2 9 9 H 1.48498 * 109.46846 * 84.82151 * 8 6 4 10 10 H 1.48503 * 109.46958 * 204.81617 * 8 6 4 11 11 H 1.48496 * 109.47336 * 324.82259 * 8 6 4 12 12 C 1.50695 * 109.47179 * 119.99856 * 2 1 3 13 13 O 1.21288 * 120.00107 * 119.99944 * 12 2 1 14 14 N 1.34780 * 120.00492 * 300.00205 * 12 2 1 15 15 C 1.46497 * 120.00282 * 179.97438 * 14 12 2 16 16 C 1.53005 * 109.46792 * 180.02562 * 15 14 12 17 17 N 1.46497 * 109.46792 * 180.02562 * 16 15 14 18 18 C 1.42472 * 113.50688 * 89.99800 * 17 16 15 19 19 C 1.49749 * 118.95819 * 182.97544 * 18 17 16 20 20 C 1.40452 * 112.93707 * 183.13099 * 19 18 17 21 21 C 1.37394 * 121.48707 * 177.29813 * 20 19 18 22 22 C 1.38353 * 118.95425 * 359.50916 * 21 20 19 23 23 C 1.37040 * 119.40711 * 1.45822 * 22 21 20 24 24 C 1.34643 * 127.10619 * 2.69647 * 19 18 17 25 25 O 1.36533 * 132.49448 * 9.04638 * 24 19 18 26 26 C 1.41355 * 121.81055 * 314.07260 * 25 24 19 27 27 C 1.27006 * 113.44486 * 270.00772 * 17 16 15 28 28 O 1.21280 * 113.57980 * 13.11428 * 27 17 16 29 29 H 1.09000 * 109.47449 * 55.07275 * 1 2 3 30 30 H 1.09003 * 109.47268 * 175.07202 * 1 2 3 31 31 H 1.08995 * 109.47229 * 295.07256 * 1 2 3 32 32 H 0.97006 * 120.00640 * 180.02562 * 7 6 4 33 33 H 0.97002 * 119.99234 * 359.97438 * 14 12 2 34 34 H 1.08996 * 109.47404 * 60.00227 * 15 14 12 35 35 H 1.08997 * 109.47161 * 299.99648 * 15 14 12 36 36 H 1.08996 * 109.47171 * 59.99826 * 16 15 14 37 37 H 1.08997 * 109.46769 * 299.99630 * 16 15 14 38 38 H 1.08998 * 107.53195 * 60.57648 * 18 17 16 39 39 H 1.09006 * 107.52846 * 305.37162 * 18 17 16 40 40 H 1.08000 * 119.25211 * 357.24980 * 20 19 18 41 41 H 1.08001 * 120.52511 * 179.53087 * 21 20 19 42 42 H 1.07997 * 120.29742 * 181.47843 * 22 21 20 43 43 H 1.07997 * 119.12679 * 180.23013 * 23 22 21 44 44 H 1.09004 * 109.25259 * 179.47448 * 26 25 24 45 45 H 1.09000 * 109.25157 * 298.90292 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1339 -1.7856 -1.2296 6 6 2.3623 0.0123 -2.3574 7 7 2.7081 -0.6127 -3.4615 8 14 2.3181 1.8794 -2.3156 9 1 3.6038 2.3930 -1.7786 10 1 2.1126 2.4005 -3.6909 11 1 1.2029 2.3288 -1.4441 12 6 2.0323 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1946 -0.9409 3.6507 16 6 1.6842 -0.2199 4.9000 17 7 2.1726 -0.9105 6.0961 18 6 3.4285 -0.4237 6.5603 19 6 4.0737 -1.0884 7.7369 20 6 5.2695 -0.4652 8.1298 21 6 5.9780 -0.8977 9.2247 22 6 5.4918 -1.9653 9.9581 23 6 4.3355 -2.5840 9.5603 24 6 3.6227 -2.1631 8.4109 25 8 2.6050 -3.0413 8.1719 26 6 1.3182 -2.6031 7.7844 27 6 1.3899 -1.8218 6.5084 28 8 0.5273 -2.1187 5.7092 29 1 -0.3634 0.5884 -0.8425 30 1 -0.3634 -1.0239 -0.0883 31 1 -0.3633 0.4355 0.9308 32 1 2.9406 -0.1043 -4.2543 33 1 1.1493 0.5389 2.5435 34 1 3.2846 -0.9413 3.6510 35 1 1.8309 -1.9684 3.6506 36 1 0.5942 -0.2199 4.8996 37 1 2.0476 0.8077 4.9003 38 1 3.3011 0.6302 6.8077 39 1 4.1297 -0.4776 5.7274 40 1 5.6408 0.3724 7.5580 41 1 6.8998 -0.4117 9.5085 42 1 6.0186 -2.3079 10.8364 43 1 3.9580 -3.4145 10.1383 44 1 0.6720 -3.4689 7.6398 45 1 0.9019 -1.9718 8.5695 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927591028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:48 Heat of formation + Delta-G solvation = -72.295512 kcal Electronic energy + Delta-G solvation = -28134.783367 eV Core-core repulsion = 24117.932054 eV Total energy + Delta-G solvation = -4016.851313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.81228 -40.80873 -40.49176 -38.75763 -37.32142 -35.79356 -35.64529 -33.47903 -32.93333 -31.72058 -30.51272 -28.57821 -27.89752 -27.23163 -25.11819 -23.71587 -23.35885 -22.92810 -21.43810 -20.85102 -19.14734 -18.67024 -18.33678 -18.15098 -17.84980 -17.32425 -16.72260 -16.51768 -16.36788 -16.35110 -15.83085 -15.66259 -15.24697 -15.16885 -15.00538 -14.73709 -14.54722 -14.33525 -13.97339 -13.88501 -13.41587 -13.26843 -13.15604 -13.10271 -12.94709 -12.59897 -12.58250 -12.39312 -12.24482 -12.12703 -11.82700 -11.74467 -11.26868 -10.87494 -10.75370 -10.54062 -10.32523 -10.05774 -9.63973 -9.42580 -8.26901 -6.34511 0.28217 0.31269 1.28630 1.36675 1.40962 1.51517 1.59380 1.86625 2.28579 2.36902 2.47823 2.69282 3.09227 3.11907 3.47617 3.77808 3.87546 3.91981 3.99798 4.07208 4.19480 4.30453 4.31842 4.33235 4.38839 4.40253 4.43516 4.49247 4.69643 4.72315 4.73956 4.78208 4.86711 4.98771 5.04066 5.14001 5.22157 5.40993 5.48349 5.51653 5.55860 5.58257 5.83292 6.25455 6.31552 6.46275 6.65124 6.83512 6.90881 7.26911 7.49950 8.91513 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.002429 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.779046 B =11523.110398 C =12161.269312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.006 4.006 3 H 0.079 0.921 4 C -0.510 4.510 5 H 0.016 0.984 6 C 0.002 3.998 7 N -0.954 5.954 8 Si 0.953 3.047 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.219 1.219 12 C 0.517 3.483 13 O -0.589 6.589 14 N -0.718 5.718 15 C 0.117 3.883 16 C 0.097 3.903 17 N -0.557 5.557 18 C 0.137 3.863 19 C -0.143 4.143 20 C -0.097 4.097 21 C -0.129 4.129 22 C -0.098 4.098 23 C -0.151 4.151 24 C 0.091 3.909 25 O -0.327 6.327 26 C 0.076 3.924 27 C 0.461 3.539 28 O -0.601 6.601 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.267 0.733 33 H 0.416 0.584 34 H 0.055 0.945 35 H 0.031 0.969 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.153 0.847 43 H 0.135 0.865 44 H 0.149 0.851 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.054 8.824 34.747 35.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.027 4.027 3 H 0.097 0.903 4 C -0.549 4.549 5 H 0.034 0.966 6 C -0.194 4.194 7 N -0.594 5.594 8 Si 0.774 3.226 9 H -0.191 1.191 10 H -0.212 1.212 11 H -0.141 1.141 12 C 0.306 3.694 13 O -0.467 6.467 14 N -0.373 5.373 15 C -0.009 4.009 16 C -0.026 4.026 17 N -0.283 5.283 18 C 0.015 3.985 19 C -0.145 4.145 20 C -0.115 4.115 21 C -0.147 4.147 22 C -0.116 4.116 23 C -0.170 4.170 24 C 0.047 3.953 25 O -0.242 6.242 26 C -0.002 4.002 27 C 0.248 3.752 28 O -0.485 6.485 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.254 0.746 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.116 0.884 37 H 0.147 0.853 38 H 0.136 0.864 39 H 0.109 0.891 40 H 0.173 0.827 41 H 0.174 0.826 42 H 0.171 0.829 43 H 0.153 0.847 44 H 0.166 0.834 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.227 7.753 34.211 35.150 hybrid contribution -0.118 0.123 -0.879 0.895 sum 2.108 7.876 33.333 34.316 Atomic orbital electron populations 1.21844 0.93854 1.00900 1.01981 1.19323 0.96177 0.97170 0.90070 0.90290 1.20887 1.43772 0.93608 0.96594 0.96574 1.26188 0.93793 1.05244 0.94225 1.70089 1.47807 1.38625 1.02856 0.85681 0.80798 0.77701 0.78457 1.19080 1.21167 1.14146 1.21639 0.78472 0.83840 0.85498 1.90576 1.39867 1.28829 1.87470 1.45764 1.54646 1.32650 1.04249 1.21357 0.98403 0.96261 0.84854 1.21874 1.02375 0.96657 0.81680 1.44901 1.20670 1.34683 1.28023 1.19739 0.83400 0.99368 0.95959 1.18999 0.98773 0.98381 0.98309 1.21473 0.92286 1.00215 0.97529 1.21423 1.00878 0.97202 0.95223 1.21288 0.94721 0.95278 1.00338 1.21848 0.97499 1.02406 0.95207 1.18522 0.89550 0.92367 0.94818 1.85898 1.18641 1.34022 1.85660 1.22952 0.84476 1.01245 0.91487 1.20025 0.82675 0.81126 0.91410 1.90857 1.41173 1.65204 1.51261 0.92077 0.95020 0.90414 0.92369 0.74621 0.92648 0.95055 0.88388 0.85270 0.86401 0.89113 0.82700 0.82570 0.82917 0.84707 0.83376 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 9.12 71.98 0.66 -4.29 16 2 C -0.01 -0.26 2.30 -12.29 -0.03 -0.29 16 3 H 0.08 3.27 5.29 -2.38 -0.01 3.26 16 4 C -0.51 -31.16 8.36 25.60 0.21 -30.95 16 5 H 0.02 1.16 7.61 -2.91 -0.02 1.14 16 6 C 0.00 0.10 5.47 84.66 0.46 0.56 16 7 N -0.95 -62.14 13.96 21.45 0.30 -61.84 16 8 Si 0.95 42.25 26.99 68.60 1.85 44.10 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.22 -8.11 6.82 99.48 0.68 -7.43 16 12 C 0.52 23.77 7.15 87.66 0.63 24.40 16 13 O -0.59 -33.98 15.77 -3.06 -0.05 -34.03 16 14 N -0.72 -23.19 5.42 -463.06 -2.51 -25.70 16 15 C 0.12 3.54 5.78 86.38 0.50 4.04 16 16 C 0.10 1.90 4.82 86.38 0.42 2.32 16 17 N -0.56 -10.88 2.64 -850.00 -2.25 -13.13 16 18 C 0.14 1.87 5.08 86.08 0.44 2.31 16 19 C -0.14 -2.13 5.87 -20.45 -0.12 -2.25 16 20 C -0.10 -0.98 9.41 22.61 0.21 -0.77 16 21 C -0.13 -1.13 10.08 22.10 0.22 -0.90 16 22 C -0.10 -0.99 10.04 22.02 0.22 -0.77 16 23 C -0.15 -2.17 9.55 22.83 0.22 -1.95 16 24 C 0.09 1.62 6.39 22.29 0.14 1.76 16 25 O -0.33 -6.60 9.53 -99.18 -0.94 -7.55 16 26 C 0.08 1.34 6.91 70.95 0.49 1.83 16 27 C 0.46 10.89 7.28 88.52 0.64 11.53 16 28 O -0.60 -19.14 14.08 -3.03 -0.04 -19.19 16 29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 2.21 7.43 -2.39 -0.02 2.19 16 32 H 0.27 16.07 8.31 -92.70 -0.77 15.30 16 33 H 0.42 9.66 7.83 -92.71 -0.73 8.93 16 34 H 0.06 1.73 7.73 -2.39 -0.02 1.71 16 35 H 0.03 1.23 7.36 -2.39 -0.02 1.21 16 36 H 0.10 2.11 6.87 -2.39 -0.02 2.10 16 37 H 0.13 1.41 7.80 -2.39 -0.02 1.39 16 38 H 0.12 0.82 8.03 -2.39 -0.02 0.80 16 39 H 0.09 1.26 7.64 -2.38 -0.02 1.24 16 40 H 0.16 0.77 7.94 -2.91 -0.02 0.75 16 41 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 42 H 0.15 0.74 8.06 -2.91 -0.02 0.72 16 43 H 0.14 1.71 8.02 -2.91 -0.02 1.68 16 44 H 0.15 2.45 7.99 -2.38 -0.02 2.43 16 45 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -92.42 369.43 1.94 -90.48 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.26 Total: 20.29 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.32 Total: 6.57 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -4.46 Total: -100.67 kcal Atomic # 8 Polarization: -59.72 SS G_CDS: -1.04 Total: -60.76 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.85 Total: 44.10 kcal Total: -92.42 1.94 -90.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927591028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.182 kcal (2) G-P(sol) polarization free energy of solvation -92.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds