Wall clock time and date at job start Tue Mar 31 2020 18:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 N 1.46497 * 109.47302 * 179.97438 * 16 15 14 18 18 C 1.42477 * 113.50280 * 89.99654 * 17 16 15 19 19 C 1.49754 * 118.98917 * 182.99688 * 18 17 16 20 20 C 1.40442 * 112.93682 * 183.11036 * 19 18 17 21 21 C 1.37394 * 121.48864 * 177.25407 * 20 19 18 22 22 C 1.38348 * 118.94955 * 359.55875 * 21 20 19 23 23 C 1.37028 * 119.41112 * 1.45074 * 22 21 20 24 24 C 1.34640 * 127.10160 * 2.67334 * 19 18 17 25 25 O 1.36536 * 132.50224 * 9.05573 * 24 19 18 26 26 C 1.41354 * 121.80054 * 314.06669 * 25 24 19 27 27 C 1.27060 * 113.50621 * 269.76173 * 17 16 15 28 28 O 1.21277 * 113.55073 * 13.11040 * 27 17 16 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 34 34 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 35 35 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 36 36 H 1.09002 * 109.46807 * 299.99867 * 16 15 14 37 37 H 1.08998 * 109.47285 * 60.00265 * 16 15 14 38 38 H 1.09003 * 107.53258 * 305.42191 * 18 17 16 39 39 H 1.09007 * 107.52856 * 60.62578 * 18 17 16 40 40 H 1.08007 * 119.25398 * 357.27621 * 20 19 18 41 41 H 1.08002 * 120.52224 * 179.53445 * 21 20 19 42 42 H 1.08007 * 120.28943 * 181.48086 * 22 21 20 43 43 H 1.08009 * 119.13049 * 180.23696 * 23 22 21 44 44 H 1.09000 * 109.24873 * 179.47438 * 26 25 24 45 45 H 1.09001 * 109.25644 * 298.90032 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1955 -0.9400 -3.6508 16 6 1.6859 -0.2183 -4.9000 17 7 2.1751 -0.9082 -6.0962 18 6 1.2984 -1.9305 -6.5611 19 6 1.7105 -2.7605 -7.7375 20 6 0.7250 -3.6807 -8.1303 21 6 0.8967 -4.4924 -9.2254 22 6 2.0653 -4.3894 -9.9587 23 6 3.0338 -3.5055 -9.5606 24 6 2.8741 -2.6928 -8.4115 25 8 4.0411 -2.0255 -8.1726 26 6 4.0559 -0.6661 -7.7853 27 6 3.2932 -0.4705 -6.5120 28 8 3.8594 0.2471 -5.7149 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7089 1.1611 3.4845 33 1 1.1493 0.5391 -2.5436 34 1 3.2855 -0.9395 -3.6507 35 1 1.8325 -1.9678 -3.6511 36 1 0.5959 -0.2184 -4.9003 37 1 2.0492 0.8093 -4.8996 38 1 1.1150 -2.6095 -5.7283 39 1 0.3473 -1.4595 -6.8094 40 1 -0.1887 -3.7517 -7.5587 41 1 0.1316 -5.1999 -9.5091 42 1 2.2128 -5.0000 -10.8373 43 1 3.9428 -3.4260 -10.1386 44 1 5.0874 -0.3449 -7.6407 45 1 3.5992 -0.0636 -8.5705 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927591030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:53 Heat of formation + Delta-G solvation = -45.820001 kcal Electronic energy + Delta-G solvation = -28065.931227 eV Core-core repulsion = 24050.227978 eV Total energy + Delta-G solvation = -4015.703249 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.95821 -40.05928 -38.70438 -38.07535 -36.38351 -34.29398 -33.67712 -32.35704 -31.13021 -30.64273 -29.32486 -27.58012 -27.21794 -25.09550 -23.76262 -22.96430 -22.34196 -21.89573 -20.44661 -19.32645 -17.89026 -17.64947 -17.20633 -16.82907 -16.21363 -16.06446 -15.85541 -15.45531 -15.09995 -14.85999 -14.73503 -14.57606 -14.29492 -14.23066 -13.91478 -13.39200 -13.32089 -12.87371 -12.66511 -12.58260 -12.40686 -12.05252 -11.94449 -11.68513 -11.55954 -11.32727 -11.11734 -10.96664 -10.69418 -10.65626 -10.20976 -9.94104 -9.89395 -9.56956 -9.05434 -8.94497 -8.83296 -8.56637 -8.39542 -8.27794 -5.99143 -4.01830 0.79640 0.84591 2.16415 2.46089 2.98051 3.20349 3.39617 3.41429 3.47602 3.76958 3.80276 4.03775 4.13762 4.44587 4.51725 4.52323 4.61037 4.76670 4.81374 4.89552 4.90666 4.95830 5.03293 5.07206 5.27754 5.34022 5.39900 5.46644 5.59554 5.79212 5.89201 5.94949 6.03570 6.11631 6.29123 6.38907 6.64333 6.85714 6.95825 7.03549 7.10507 7.24214 7.51703 7.79179 7.80752 8.03115 8.18868 8.49753 9.06945 9.29940 9.63436 11.08536 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021905 B = 0.002262 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.953355 B =12376.133701 C =12751.642845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.520 3.480 13 O -0.546 6.546 14 N -0.744 5.744 15 C 0.113 3.887 16 C 0.086 3.914 17 N -0.560 5.560 18 C 0.145 3.855 19 C -0.130 4.130 20 C -0.093 4.093 21 C -0.130 4.130 22 C -0.099 4.099 23 C -0.136 4.136 24 C 0.120 3.880 25 O -0.312 6.312 26 C 0.073 3.927 27 C 0.467 3.533 28 O -0.554 6.554 29 H 0.012 0.988 30 H 0.030 0.970 31 H 0.093 0.907 32 H 0.261 0.739 33 H 0.395 0.605 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.147 0.853 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 -4.884 -29.428 30.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.071 0.929 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.421 6.421 14 N -0.399 5.399 15 C -0.013 4.013 16 C -0.036 4.036 17 N -0.288 5.288 18 C 0.022 3.978 19 C -0.132 4.132 20 C -0.112 4.112 21 C -0.148 4.148 22 C -0.117 4.117 23 C -0.155 4.155 24 C 0.076 3.924 25 O -0.227 6.227 26 C -0.004 4.004 27 C 0.253 3.747 28 O -0.435 6.435 29 H 0.031 0.969 30 H 0.049 0.951 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.229 0.771 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.164 0.836 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.363 -5.260 -28.873 29.443 hybrid contribution -0.218 0.042 0.717 0.750 sum -2.581 -5.218 -28.156 28.752 Atomic orbital electron populations 1.21737 0.96559 0.99729 1.00896 1.18868 0.94123 0.96881 0.89282 0.92940 1.21112 1.30911 1.12779 0.89029 0.90881 1.24953 0.95162 0.95094 0.99092 1.69864 1.37187 1.23092 1.23575 0.86501 0.79317 0.79673 0.81606 1.21399 1.20230 1.20197 1.21974 0.78416 0.84281 0.84327 1.90533 1.37847 1.27035 1.86709 1.46132 1.55664 1.32689 1.05427 1.21322 1.00476 0.95686 0.83775 1.21960 0.98946 0.98980 0.83718 1.44813 1.20552 1.34875 1.28552 1.19476 0.92721 0.89767 0.95883 1.18828 0.95305 1.00889 0.98149 1.21176 0.98125 0.94701 0.97182 1.21036 0.98176 0.99745 0.95820 1.20945 0.93396 0.97611 0.99748 1.21687 1.00615 0.97911 0.95254 1.18201 0.86276 0.94377 0.93524 1.85911 1.26873 1.24407 1.85501 1.22917 1.03241 0.82042 0.92193 1.19403 0.81974 0.82549 0.90800 1.90878 1.62215 1.40492 1.49904 0.96947 0.95059 0.88849 0.92954 0.77109 0.91104 0.92520 0.89758 0.87856 0.89113 0.89830 0.84986 0.85108 0.85194 0.85022 0.83578 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.87 37.16 0.33 -2.69 16 2 C 0.03 0.75 2.64 -92.93 -0.25 0.51 16 3 H 0.05 1.39 8.14 -51.93 -0.42 0.96 16 4 C -0.50 -14.55 8.37 -34.44 -0.29 -14.84 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.55 11.32 55.43 0.63 -24.93 16 8 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.52 12.37 7.15 -10.99 -0.08 12.29 16 13 O -0.55 -15.00 15.46 5.56 0.09 -14.91 16 14 N -0.74 -13.44 5.45 -60.30 -0.33 -13.77 16 15 C 0.11 1.82 5.78 -4.04 -0.02 1.79 16 16 C 0.09 1.01 4.82 -4.04 -0.02 0.99 16 17 N -0.56 -6.14 2.64 -182.00 -0.48 -6.62 16 18 C 0.14 1.21 5.08 -7.76 -0.04 1.18 16 19 C -0.13 -1.11 5.87 -105.52 -0.62 -1.73 16 20 C -0.09 -0.62 9.41 -39.06 -0.37 -0.99 16 21 C -0.13 -0.77 10.08 -39.85 -0.40 -1.17 16 22 C -0.10 -0.61 10.04 -39.98 -0.40 -1.02 16 23 C -0.14 -1.06 9.55 -38.72 -0.37 -1.43 16 24 C 0.12 1.14 6.39 -39.56 -0.25 0.88 16 25 O -0.31 -3.19 9.53 -21.32 -0.20 -3.40 16 26 C 0.07 0.68 6.90 35.53 0.25 0.92 16 27 C 0.47 5.75 7.29 -14.73 -0.11 5.64 16 28 O -0.55 -8.90 14.10 5.56 0.08 -8.83 16 29 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.40 5.99 7.89 -40.82 -0.32 5.66 16 34 H 0.07 1.38 7.38 -51.93 -0.38 0.99 16 35 H 0.06 0.92 7.73 -51.93 -0.40 0.52 16 36 H 0.08 0.73 7.80 -51.93 -0.41 0.33 16 37 H 0.10 1.31 6.86 -51.93 -0.36 0.95 16 38 H 0.09 0.77 7.64 -51.93 -0.40 0.37 16 39 H 0.08 0.51 8.03 -51.92 -0.42 0.09 16 40 H 0.13 0.60 7.94 -52.48 -0.42 0.19 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 43 H 0.13 0.87 8.02 -52.48 -0.42 0.45 16 44 H 0.15 1.20 7.99 -51.93 -0.42 0.79 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -36.08 369.44 -8.65 -44.73 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.25 Total: 3.02 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -2.73 Total: 1.86 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.18 Total: -45.31 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.04 Total: -27.14 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.08 -8.65 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927591030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.088 kcal (2) G-P(sol) polarization free energy of solvation -36.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds