Wall clock time and date at job start Tue Mar 31 2020 18:19:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09003 * 109.46949 * 2 1
4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3
5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1
6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1
7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4
10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4
11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4
12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3
13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1
14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1
15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2
16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12
17 17 N 1.46497 * 109.47302 * 179.97438 * 16 15 14
18 18 C 1.42477 * 113.50280 * 89.99654 * 17 16 15
19 19 C 1.49754 * 118.98917 * 182.99688 * 18 17 16
20 20 C 1.40442 * 112.93682 * 183.11036 * 19 18 17
21 21 C 1.37394 * 121.48864 * 177.25407 * 20 19 18
22 22 C 1.38348 * 118.94955 * 359.55875 * 21 20 19
23 23 C 1.37028 * 119.41112 * 1.45074 * 22 21 20
24 24 C 1.34640 * 127.10160 * 2.67334 * 19 18 17
25 25 O 1.36536 * 132.50224 * 9.05573 * 24 19 18
26 26 C 1.41354 * 121.80054 * 314.06669 * 25 24 19
27 27 C 1.27060 * 113.50621 * 269.76173 * 17 16 15
28 28 O 1.21277 * 113.55073 * 13.11040 * 27 17 16
29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3
30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3
32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4
33 33 H 0.97006 * 120.00251 * 0.02562 * 14 12 2
34 34 H 1.09002 * 109.47081 * 299.99975 * 15 14 12
35 35 H 1.09000 * 109.47237 * 60.00287 * 15 14 12
36 36 H 1.09002 * 109.46807 * 299.99867 * 16 15 14
37 37 H 1.08998 * 109.47285 * 60.00265 * 16 15 14
38 38 H 1.09003 * 107.53258 * 305.42191 * 18 17 16
39 39 H 1.09007 * 107.52856 * 60.62578 * 18 17 16
40 40 H 1.08007 * 119.25398 * 357.27621 * 20 19 18
41 41 H 1.08002 * 120.52224 * 179.53445 * 21 20 19
42 42 H 1.08007 * 120.28943 * 181.48086 * 22 21 20
43 43 H 1.08009 * 119.13049 * 180.23696 * 23 22 21
44 44 H 1.09000 * 109.24873 * 179.47438 * 26 25 24
45 45 H 1.09001 * 109.25644 * 298.90032 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 1.2303
5 1 2.6532 -1.5886 1.1313
6 6 1.6992 -0.2395 2.4827
7 7 0.9435 0.8301 2.6034
8 14 2.3213 -1.1207 4.0078
9 1 1.8269 -0.4203 5.2204
10 1 1.8258 -2.5205 4.0075
11 1 3.8063 -1.1213 4.0080
12 6 2.0323 -0.7103 -1.2305
13 8 2.7295 -1.6964 -1.1193
14 7 1.7067 -0.2498 -2.4546
15 6 2.1955 -0.9400 -3.6508
16 6 1.6859 -0.2183 -4.9000
17 7 2.1751 -0.9082 -6.0962
18 6 1.2984 -1.9305 -6.5611
19 6 1.7105 -2.7605 -7.7375
20 6 0.7250 -3.6807 -8.1303
21 6 0.8967 -4.4924 -9.2254
22 6 2.0653 -4.3894 -9.9587
23 6 3.0338 -3.5055 -9.5606
24 6 2.8741 -2.6928 -8.4115
25 8 4.0411 -2.0255 -8.1726
26 6 4.0559 -0.6661 -7.7853
27 6 3.2932 -0.4705 -6.5120
28 8 3.8594 0.2471 -5.7149
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8899
32 1 0.7089 1.1611 3.4845
33 1 1.1493 0.5391 -2.5436
34 1 3.2855 -0.9395 -3.6507
35 1 1.8325 -1.9678 -3.6511
36 1 0.5959 -0.2184 -4.9003
37 1 2.0492 0.8093 -4.8996
38 1 1.1150 -2.6095 -5.7283
39 1 0.3473 -1.4595 -6.8094
40 1 -0.1887 -3.7517 -7.5587
41 1 0.1316 -5.1999 -9.5091
42 1 2.2128 -5.0000 -10.8373
43 1 3.9428 -3.4260 -10.1386
44 1 5.0874 -0.3449 -7.6407
45 1 3.5992 -0.0636 -8.5705
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000927591030.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:19:53
Heat of formation + Delta-G solvation = -45.820001 kcal
Electronic energy + Delta-G solvation = -28065.931227 eV
Core-core repulsion = 24050.227978 eV
Total energy + Delta-G solvation = -4015.703249 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 332.157 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.95821 -40.05928 -38.70438 -38.07535 -36.38351 -34.29398 -33.67712 -32.35704
-31.13021 -30.64273 -29.32486 -27.58012 -27.21794 -25.09550 -23.76262 -22.96430
-22.34196 -21.89573 -20.44661 -19.32645 -17.89026 -17.64947 -17.20633 -16.82907
-16.21363 -16.06446 -15.85541 -15.45531 -15.09995 -14.85999 -14.73503 -14.57606
-14.29492 -14.23066 -13.91478 -13.39200 -13.32089 -12.87371 -12.66511 -12.58260
-12.40686 -12.05252 -11.94449 -11.68513 -11.55954 -11.32727 -11.11734 -10.96664
-10.69418 -10.65626 -10.20976 -9.94104 -9.89395 -9.56956 -9.05434 -8.94497
-8.83296 -8.56637 -8.39542 -8.27794 -5.99143 -4.01830 0.79640 0.84591
2.16415 2.46089 2.98051 3.20349 3.39617 3.41429 3.47602 3.76958
3.80276 4.03775 4.13762 4.44587 4.51725 4.52323 4.61037 4.76670
4.81374 4.89552 4.90666 4.95830 5.03293 5.07206 5.27754 5.34022
5.39900 5.46644 5.59554 5.79212 5.89201 5.94949 6.03570 6.11631
6.29123 6.38907 6.64333 6.85714 6.95825 7.03549 7.10507 7.24214
7.51703 7.79179 7.80752 8.03115 8.18868 8.49753 9.06945 9.29940
9.63436 11.08536
Molecular weight = 332.16amu
Principal moments of inertia in cm(-1)
A = 0.021905 B = 0.002262 C = 0.002195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1277.953355 B =12376.133701 C =12751.642845
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.030 3.970
3 H 0.053 0.947
4 C -0.500 4.500
5 H 0.073 0.927
6 C 0.057 3.943
7 N -0.898 5.898
8 Si 0.901 3.099
9 H -0.288 1.288
10 H -0.277 1.277
11 H -0.276 1.276
12 C 0.520 3.480
13 O -0.546 6.546
14 N -0.744 5.744
15 C 0.113 3.887
16 C 0.086 3.914
17 N -0.560 5.560
18 C 0.145 3.855
19 C -0.130 4.130
20 C -0.093 4.093
21 C -0.130 4.130
22 C -0.099 4.099
23 C -0.136 4.136
24 C 0.120 3.880
25 O -0.312 6.312
26 C 0.073 3.927
27 C 0.467 3.533
28 O -0.554 6.554
29 H 0.012 0.988
30 H 0.030 0.970
31 H 0.093 0.907
32 H 0.261 0.739
33 H 0.395 0.605
34 H 0.071 0.929
35 H 0.057 0.943
36 H 0.084 0.916
37 H 0.103 0.897
38 H 0.091 0.909
39 H 0.084 0.916
40 H 0.132 0.868
41 H 0.131 0.869
42 H 0.130 0.870
43 H 0.132 0.868
44 H 0.147 0.853
45 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.304 -4.884 -29.428 30.013
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C 0.008 3.992
3 H 0.071 0.929
4 C -0.538 4.538
5 H 0.091 0.909
6 C -0.143 4.143
7 N -0.537 5.537
8 Si 0.729 3.271
9 H -0.214 1.214
10 H -0.202 1.202
11 H -0.202 1.202
12 C 0.310 3.690
13 O -0.421 6.421
14 N -0.399 5.399
15 C -0.013 4.013
16 C -0.036 4.036
17 N -0.288 5.288
18 C 0.022 3.978
19 C -0.132 4.132
20 C -0.112 4.112
21 C -0.148 4.148
22 C -0.117 4.117
23 C -0.155 4.155
24 C 0.076 3.924
25 O -0.227 6.227
26 C -0.004 4.004
27 C 0.253 3.747
28 O -0.435 6.435
29 H 0.031 0.969
30 H 0.049 0.951
31 H 0.112 0.888
32 H 0.070 0.930
33 H 0.229 0.771
34 H 0.089 0.911
35 H 0.075 0.925
36 H 0.102 0.898
37 H 0.121 0.879
38 H 0.109 0.891
39 H 0.102 0.898
40 H 0.150 0.850
41 H 0.149 0.851
42 H 0.148 0.852
43 H 0.150 0.850
44 H 0.164 0.836
45 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -2.363 -5.260 -28.873 29.443
hybrid contribution -0.218 0.042 0.717 0.750
sum -2.581 -5.218 -28.156 28.752
Atomic orbital electron populations
1.21737 0.96559 0.99729 1.00896 1.18868 0.94123 0.96881 0.89282
0.92940 1.21112 1.30911 1.12779 0.89029 0.90881 1.24953 0.95162
0.95094 0.99092 1.69864 1.37187 1.23092 1.23575 0.86501 0.79317
0.79673 0.81606 1.21399 1.20230 1.20197 1.21974 0.78416 0.84281
0.84327 1.90533 1.37847 1.27035 1.86709 1.46132 1.55664 1.32689
1.05427 1.21322 1.00476 0.95686 0.83775 1.21960 0.98946 0.98980
0.83718 1.44813 1.20552 1.34875 1.28552 1.19476 0.92721 0.89767
0.95883 1.18828 0.95305 1.00889 0.98149 1.21176 0.98125 0.94701
0.97182 1.21036 0.98176 0.99745 0.95820 1.20945 0.93396 0.97611
0.99748 1.21687 1.00615 0.97911 0.95254 1.18201 0.86276 0.94377
0.93524 1.85911 1.26873 1.24407 1.85501 1.22917 1.03241 0.82042
0.92193 1.19403 0.81974 0.82549 0.90800 1.90878 1.62215 1.40492
1.49904 0.96947 0.95059 0.88849 0.92954 0.77109 0.91104 0.92520
0.89758 0.87856 0.89113 0.89830 0.84986 0.85108 0.85194 0.85022
0.83578 0.89833
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.02 8.87 37.16 0.33 -2.69 16
2 C 0.03 0.75 2.64 -92.93 -0.25 0.51 16
3 H 0.05 1.39 8.14 -51.93 -0.42 0.96 16
4 C -0.50 -14.55 8.37 -34.44 -0.29 -14.84 16
5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16
6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16
7 N -0.90 -25.55 11.32 55.43 0.63 -24.93 16
8 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16
9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
12 C 0.52 12.37 7.15 -10.99 -0.08 12.29 16
13 O -0.55 -15.00 15.46 5.56 0.09 -14.91 16
14 N -0.74 -13.44 5.45 -60.30 -0.33 -13.77 16
15 C 0.11 1.82 5.78 -4.04 -0.02 1.79 16
16 C 0.09 1.01 4.82 -4.04 -0.02 0.99 16
17 N -0.56 -6.14 2.64 -182.00 -0.48 -6.62 16
18 C 0.14 1.21 5.08 -7.76 -0.04 1.18 16
19 C -0.13 -1.11 5.87 -105.52 -0.62 -1.73 16
20 C -0.09 -0.62 9.41 -39.06 -0.37 -0.99 16
21 C -0.13 -0.77 10.08 -39.85 -0.40 -1.17 16
22 C -0.10 -0.61 10.04 -39.98 -0.40 -1.02 16
23 C -0.14 -1.06 9.55 -38.72 -0.37 -1.43 16
24 C 0.12 1.14 6.39 -39.56 -0.25 0.88 16
25 O -0.31 -3.19 9.53 -21.32 -0.20 -3.40 16
26 C 0.07 0.68 6.90 35.53 0.25 0.92 16
27 C 0.47 5.75 7.29 -14.73 -0.11 5.64 16
28 O -0.55 -8.90 14.10 5.56 0.08 -8.83 16
29 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16
30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16
31 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16
32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16
33 H 0.40 5.99 7.89 -40.82 -0.32 5.66 16
34 H 0.07 1.38 7.38 -51.93 -0.38 0.99 16
35 H 0.06 0.92 7.73 -51.93 -0.40 0.52 16
36 H 0.08 0.73 7.80 -51.93 -0.41 0.33 16
37 H 0.10 1.31 6.86 -51.93 -0.36 0.95 16
38 H 0.09 0.77 7.64 -51.93 -0.40 0.37 16
39 H 0.08 0.51 8.03 -51.92 -0.42 0.09 16
40 H 0.13 0.60 7.94 -52.48 -0.42 0.19 16
41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16
42 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16
43 H 0.13 0.87 8.02 -52.48 -0.42 0.45 16
44 H 0.15 1.20 7.99 -51.93 -0.42 0.79 16
45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
LS Contribution 369.44 15.07 5.57 5.57
Total: -1.00 -36.08 369.44 -8.65 -44.73
By element:
Atomic # 1 Polarization: 9.26 SS G_CDS: -6.25 Total: 3.02 kcal
Atomic # 6 Polarization: 4.60 SS G_CDS: -2.73 Total: 1.86 kcal
Atomic # 7 Polarization: -45.13 SS G_CDS: -0.18 Total: -45.31 kcal
Atomic # 8 Polarization: -27.10 SS G_CDS: -0.04 Total: -27.14 kcal
Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -36.08 -8.65 -44.73 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000927591030.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.088 kcal
(2) G-P(sol) polarization free energy of solvation -36.077 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.166 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.732 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.820 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds