Wall clock time and date at job start Tue Mar 31 2020 18:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 N 1.46497 * 109.47302 * 179.97438 * 16 15 14 18 18 C 1.42477 * 113.50280 * 89.99654 * 17 16 15 19 19 C 1.49754 * 118.98917 * 182.99688 * 18 17 16 20 20 C 1.40442 * 112.93682 * 183.11036 * 19 18 17 21 21 C 1.37394 * 121.48864 * 177.25407 * 20 19 18 22 22 C 1.38348 * 118.94955 * 359.55875 * 21 20 19 23 23 C 1.37028 * 119.41112 * 1.45074 * 22 21 20 24 24 C 1.34640 * 127.10160 * 2.67334 * 19 18 17 25 25 O 1.36536 * 132.50224 * 9.05573 * 24 19 18 26 26 C 1.41354 * 121.80054 * 314.06669 * 25 24 19 27 27 C 1.27060 * 113.50621 * 269.76173 * 17 16 15 28 28 O 1.21277 * 113.55073 * 13.11040 * 27 17 16 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 34 34 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 35 35 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 36 36 H 1.09002 * 109.46807 * 299.99867 * 16 15 14 37 37 H 1.08998 * 109.47285 * 60.00265 * 16 15 14 38 38 H 1.09003 * 107.53258 * 305.42191 * 18 17 16 39 39 H 1.09007 * 107.52856 * 60.62578 * 18 17 16 40 40 H 1.08007 * 119.25398 * 357.27621 * 20 19 18 41 41 H 1.08002 * 120.52224 * 179.53445 * 21 20 19 42 42 H 1.08007 * 120.28943 * 181.48086 * 22 21 20 43 43 H 1.08009 * 119.13049 * 180.23696 * 23 22 21 44 44 H 1.09000 * 109.24873 * 179.47438 * 26 25 24 45 45 H 1.09001 * 109.25644 * 298.90032 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1955 -0.9400 -3.6508 16 6 1.6859 -0.2183 -4.9000 17 7 2.1751 -0.9082 -6.0962 18 6 1.2984 -1.9305 -6.5611 19 6 1.7105 -2.7605 -7.7375 20 6 0.7250 -3.6807 -8.1303 21 6 0.8967 -4.4924 -9.2254 22 6 2.0653 -4.3894 -9.9587 23 6 3.0338 -3.5055 -9.5606 24 6 2.8741 -2.6928 -8.4115 25 8 4.0411 -2.0255 -8.1726 26 6 4.0559 -0.6661 -7.7853 27 6 3.2932 -0.4705 -6.5120 28 8 3.8594 0.2471 -5.7149 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7089 1.1611 3.4845 33 1 1.1493 0.5391 -2.5436 34 1 3.2855 -0.9395 -3.6507 35 1 1.8325 -1.9678 -3.6511 36 1 0.5959 -0.2184 -4.9003 37 1 2.0492 0.8093 -4.8996 38 1 1.1150 -2.6095 -5.7283 39 1 0.3473 -1.4595 -6.8094 40 1 -0.1887 -3.7517 -7.5587 41 1 0.1316 -5.1999 -9.5091 42 1 2.2128 -5.0000 -10.8373 43 1 3.9428 -3.4260 -10.1386 44 1 5.0874 -0.3449 -7.6407 45 1 3.5992 -0.0636 -8.5705 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927591030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:52 Heat of formation + Delta-G solvation = -70.930849 kcal Electronic energy + Delta-G solvation = -28067.020115 eV Core-core repulsion = 24050.227978 eV Total energy + Delta-G solvation = -4016.792137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.81179 -40.79339 -40.45748 -38.75695 -37.32751 -35.85106 -35.70813 -33.17584 -32.52043 -31.71184 -30.42441 -28.54538 -27.89444 -27.18962 -25.09691 -23.77552 -23.39623 -22.92814 -21.47749 -20.91036 -18.69274 -18.44669 -18.27594 -18.15974 -17.77774 -17.35449 -16.69130 -16.51683 -16.44777 -16.30565 -15.95842 -15.66631 -15.26040 -15.10099 -14.96104 -14.67943 -14.55332 -14.29219 -13.90733 -13.50426 -13.40594 -13.24089 -13.14355 -12.97052 -12.72876 -12.60181 -12.57940 -12.40346 -12.24429 -12.17816 -12.01472 -11.82449 -11.05781 -10.87897 -10.63509 -10.43580 -10.28510 -10.04509 -9.63765 -9.42326 -8.15725 -6.26013 0.28614 0.31671 1.28433 1.39990 1.41843 1.50157 1.59318 1.89618 2.28424 2.38699 2.58651 2.69809 3.10880 3.13504 3.47703 3.76961 3.86763 3.92144 3.99399 4.07419 4.24756 4.30633 4.31928 4.37015 4.41276 4.44076 4.49330 4.69226 4.72864 4.75865 4.81709 4.95712 4.98030 5.02929 5.06177 5.22422 5.41513 5.50032 5.51581 5.56265 5.74718 5.83725 5.94732 6.21493 6.31124 6.46254 6.71228 6.84149 6.90807 7.38509 7.51421 8.89866 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021905 B = 0.002262 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.953355 B =12376.133701 C =12751.642845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.025 3.975 3 H 0.041 0.959 4 C -0.532 4.532 5 H 0.045 0.955 6 C 0.020 3.980 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.521 3.479 13 O -0.591 6.591 14 N -0.719 5.719 15 C 0.119 3.881 16 C 0.097 3.903 17 N -0.556 5.556 18 C 0.137 3.863 19 C -0.143 4.143 20 C -0.097 4.097 21 C -0.129 4.129 22 C -0.098 4.098 23 C -0.151 4.151 24 C 0.091 3.909 25 O -0.326 6.326 26 C 0.077 3.923 27 C 0.460 3.540 28 O -0.602 6.602 29 H 0.057 0.943 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.266 0.734 33 H 0.413 0.587 34 H 0.032 0.968 35 H 0.057 0.943 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.154 0.846 43 H 0.135 0.865 44 H 0.150 0.850 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.528 -5.377 -31.141 32.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.004 3.996 3 H 0.058 0.942 4 C -0.570 4.570 5 H 0.063 0.937 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.200 1.200 11 H -0.205 1.205 12 C 0.310 3.690 13 O -0.471 6.471 14 N -0.374 5.374 15 C -0.007 4.007 16 C -0.026 4.026 17 N -0.282 5.282 18 C 0.015 3.985 19 C -0.144 4.144 20 C -0.115 4.115 21 C -0.147 4.147 22 C -0.116 4.116 23 C -0.169 4.169 24 C 0.047 3.953 25 O -0.241 6.241 26 C -0.001 4.001 27 C 0.247 3.753 28 O -0.486 6.486 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.250 0.750 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.145 0.855 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.134 0.866 40 H 0.173 0.827 41 H 0.175 0.825 42 H 0.171 0.829 43 H 0.153 0.847 44 H 0.167 0.833 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.643 -5.733 -30.643 31.519 hybrid contribution 0.456 0.155 1.170 1.265 sum -4.188 -5.578 -29.474 30.288 Atomic orbital electron populations 1.21548 0.94438 0.99592 1.01989 1.18818 0.95815 0.95762 0.89252 0.94168 1.21249 1.31743 1.12767 0.91267 0.93658 1.25590 0.95200 0.95785 1.01352 1.69936 1.37069 1.23412 1.24405 0.85657 0.78528 0.78825 0.78890 1.19667 1.20045 1.20510 1.21651 0.78064 0.83660 0.85627 1.90509 1.39974 1.29070 1.87555 1.45775 1.54457 1.32685 1.04464 1.21343 0.98253 0.96335 0.84733 1.21850 1.01090 0.97793 0.81867 1.44906 1.20449 1.35003 1.27838 1.19742 0.93276 0.89440 0.96037 1.18990 0.95569 1.01596 0.98275 1.21470 0.98426 0.94051 0.97560 1.21422 0.98505 0.99569 0.95173 1.21287 0.92980 0.96994 1.00331 1.21845 1.01484 0.98415 0.95163 1.18524 0.86579 0.95339 0.94844 1.85899 1.27898 1.24692 1.85645 1.22925 1.03263 0.82442 0.91432 1.20056 0.82050 0.81760 0.91406 1.90860 1.63575 1.42779 1.51423 0.92453 0.95670 0.91049 0.92518 0.74976 0.94988 0.92435 0.85459 0.88701 0.89043 0.86571 0.82730 0.82533 0.82869 0.84671 0.83296 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.87 71.98 0.64 -4.67 16 2 C 0.02 1.28 2.64 -12.29 -0.03 1.25 16 3 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.53 -31.73 8.37 25.60 0.21 -31.51 16 5 H 0.05 2.90 6.75 -2.91 -0.02 2.88 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -51.60 11.32 21.45 0.24 -51.36 16 8 Si 0.96 45.91 29.54 68.60 2.03 47.93 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 12 C 0.52 25.10 7.15 87.66 0.63 25.72 16 13 O -0.59 -33.64 15.46 -3.03 -0.05 -33.69 16 14 N -0.72 -25.48 5.45 -463.07 -2.52 -28.00 16 15 C 0.12 3.79 5.78 86.38 0.50 4.29 16 16 C 0.10 2.09 4.82 86.38 0.42 2.51 16 17 N -0.56 -11.52 2.64 -849.99 -2.25 -13.77 16 18 C 0.14 1.99 5.08 86.08 0.44 2.42 16 19 C -0.14 -2.19 5.87 -20.45 -0.12 -2.31 16 20 C -0.10 -1.01 9.41 22.61 0.21 -0.80 16 21 C -0.13 -1.13 10.08 22.10 0.22 -0.91 16 22 C -0.10 -0.99 10.04 22.01 0.22 -0.77 16 23 C -0.15 -2.18 9.55 22.83 0.22 -1.96 16 24 C 0.09 1.64 6.39 22.29 0.14 1.78 16 25 O -0.33 -6.68 9.53 -99.21 -0.95 -7.63 16 26 C 0.08 1.40 6.90 70.93 0.49 1.89 16 27 C 0.46 11.34 7.29 88.49 0.64 11.99 16 28 O -0.60 -19.98 14.10 -3.02 -0.04 -20.02 16 29 H 0.06 2.01 7.57 -2.38 -0.02 1.99 16 30 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 32 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.41 11.65 7.89 -92.70 -0.73 10.92 16 34 H 0.03 1.29 7.38 -2.39 -0.02 1.27 16 35 H 0.06 1.85 7.73 -2.39 -0.02 1.83 16 36 H 0.13 1.70 7.80 -2.39 -0.02 1.68 16 37 H 0.09 2.30 6.86 -2.39 -0.02 2.28 16 38 H 0.09 1.34 7.64 -2.39 -0.02 1.32 16 39 H 0.12 0.95 8.03 -2.38 -0.02 0.93 16 40 H 0.16 0.83 7.94 -2.91 -0.02 0.81 16 41 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 42 H 0.15 0.74 8.06 -2.91 -0.02 0.72 16 43 H 0.14 1.72 8.02 -2.91 -0.02 1.69 16 44 H 0.15 2.55 7.99 -2.39 -0.02 2.53 16 45 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -81.74 369.44 2.03 -79.71 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.29 Total: 16.31 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 5.28 Total: 10.52 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -4.53 Total: -93.13 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -1.04 Total: -61.34 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -81.74 2.03 -79.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927591030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.780 kcal (2) G-P(sol) polarization free energy of solvation -81.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds