Wall clock time and date at job start Tue Mar 31 2020 18:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47018 * 2 1 4 4 C 1.50700 * 109.47330 * 239.99608 * 2 1 3 5 5 H 1.07999 * 119.99953 * 240.00199 * 4 2 1 6 6 C 1.37880 * 119.99920 * 59.99547 * 4 2 1 7 7 N 1.31514 * 119.99894 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99814 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47106 * 60.00450 * 8 6 4 10 10 H 1.48500 * 109.46680 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47366 * 300.00114 * 8 6 4 12 12 N 1.46904 * 109.47158 * 119.99497 * 2 1 3 13 13 C 1.46897 * 111.00228 * 275.00084 * 12 2 1 14 14 C 1.52993 * 109.47364 * 180.02562 * 13 12 2 15 15 O 1.42899 * 109.47125 * 64.99788 * 14 13 12 16 16 C 1.42906 * 113.99829 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47062 * 180.02562 * 16 15 14 18 18 N 1.46497 * 109.47100 * 65.00150 * 17 16 15 19 19 C 1.34527 * 124.46173 * 269.97804 * 18 17 16 20 20 O 1.21445 * 125.70798 * 0.03494 * 19 18 17 21 21 C 1.47815 * 108.57968 * 180.02562 * 19 18 17 22 22 C 1.38565 * 134.29113 * 180.02562 * 21 19 18 23 23 C 1.38612 * 119.71975 * 179.97438 * 22 21 19 24 24 C 1.38234 * 120.45518 * 0.02900 * 23 22 21 25 25 C 1.38604 * 120.46148 * 359.95875 * 24 23 22 26 26 C 1.38570 * 119.72412 * 0.02562 * 25 24 23 27 27 C 1.34527 * 124.46351 * 89.99811 * 18 17 16 28 28 O 1.21449 * 125.70270 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.47043 * 60.00285 * 1 2 3 30 30 H 1.09001 * 109.46914 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46469 * 300.00190 * 1 2 3 32 32 H 0.96998 * 119.99784 * 179.97438 * 7 6 4 33 33 H 1.00903 * 110.99915 * 151.04241 * 12 2 1 34 34 H 1.09004 * 109.47093 * 59.99712 * 13 12 2 35 35 H 1.09001 * 109.46962 * 300.00207 * 13 12 2 36 36 H 1.08999 * 109.47111 * 304.99666 * 14 13 12 37 37 H 1.09001 * 109.47465 * 185.00416 * 14 13 12 38 38 H 1.09002 * 109.47337 * 60.00141 * 16 15 14 39 39 H 1.08998 * 109.47366 * 300.00165 * 16 15 14 40 40 H 1.09004 * 109.47148 * 305.00381 * 17 16 15 41 41 H 1.08999 * 109.47414 * 185.00158 * 17 16 15 42 42 H 1.08008 * 120.14186 * 359.68328 * 22 21 19 43 43 H 1.08000 * 119.77048 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.76600 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.14014 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1207 -4.0078 9 1 1.8259 -2.5205 -4.0075 10 1 1.8269 -0.4203 -5.2204 11 1 3.8064 -1.1212 -4.0081 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2227 2.3469 14 6 2.5963 -0.5326 3.5742 15 8 3.9446 -0.9481 3.3478 16 6 4.5223 -1.6670 4.4394 17 6 5.9590 -2.0591 4.0885 18 7 6.7741 -0.8503 3.9460 19 6 6.9460 -0.1797 2.7925 20 8 6.4571 -0.4757 1.7209 21 6 7.8294 0.9777 3.0476 22 6 8.3418 1.9960 2.2600 23 6 9.1662 2.9551 2.8273 24 6 9.4806 2.9017 4.1723 25 6 8.9753 1.8891 4.9725 26 6 8.1495 0.9236 4.4192 27 6 7.4497 -0.2647 4.9512 28 8 7.4802 -0.6488 6.1029 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 0.7094 1.1615 -3.4845 33 1 2.9174 -1.1205 1.0288 34 1 1.0871 0.6165 2.5525 35 1 2.7589 1.0463 2.1181 36 1 1.9710 -1.4079 3.7502 37 1 2.5590 0.1215 4.4454 38 1 3.9370 -2.5660 4.6329 39 1 4.5250 -1.0368 5.3287 40 1 5.9653 -2.6143 3.1505 41 1 6.3697 -2.6827 4.8826 42 1 8.1036 2.0397 1.2074 43 1 9.5663 3.7489 2.2141 44 1 10.1244 3.6545 4.6028 45 1 9.2240 1.8526 6.0228 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930867171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:58 Heat of formation + Delta-G solvation = -57.752775 kcal Electronic energy + Delta-G solvation = -28320.874087 eV Core-core repulsion = 24304.653394 eV Total energy + Delta-G solvation = -4016.220693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.43901 -38.85411 -38.66972 -37.91626 -36.00685 -35.50889 -33.12056 -32.34153 -31.45844 -30.10815 -28.95831 -26.46198 -25.26710 -25.03124 -24.62822 -22.43350 -22.30616 -21.54065 -20.02134 -19.65399 -18.00127 -17.52527 -16.91489 -16.68668 -16.42529 -16.29284 -15.59568 -15.42844 -14.88499 -14.78538 -14.61366 -14.31605 -14.27515 -14.01727 -14.00485 -13.38858 -13.16800 -12.84628 -12.66825 -12.57321 -12.13169 -12.00375 -11.76571 -11.65999 -11.16566 -10.96106 -10.71517 -10.70151 -10.64005 -10.36863 -10.17082 -10.04533 -9.91792 -9.78698 -9.55365 -9.52183 -9.43947 -8.72796 -8.37634 -7.14127 -5.93279 -3.98305 -0.16768 0.64468 1.81177 2.16465 2.83325 3.29902 3.38750 3.40889 3.41351 3.45808 3.76444 4.11906 4.29101 4.49016 4.52261 4.71268 4.80638 4.85219 4.88751 5.03674 5.13694 5.16157 5.25025 5.38888 5.39224 5.43212 5.56846 5.62477 5.64674 5.73511 5.78008 5.84478 5.98693 6.24068 6.30888 6.44555 6.54644 6.95243 7.08800 7.21427 7.30896 7.35517 7.59081 7.59484 7.88762 8.01005 8.37282 8.52583 8.81279 9.13165 9.66848 11.13401 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012213 B = 0.003121 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.039381 B = 8970.030732 C =10133.789101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.513 4.513 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.687 5.687 13 C 0.064 3.936 14 C 0.067 3.933 15 O -0.375 6.375 16 C 0.044 3.956 17 C 0.115 3.885 18 N -0.571 5.571 19 C 0.567 3.433 20 O -0.425 6.425 21 C -0.131 4.131 22 C -0.047 4.047 23 C -0.095 4.095 24 C -0.102 4.102 25 C -0.047 4.047 26 C -0.144 4.144 27 C 0.576 3.424 28 O -0.474 6.474 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.002 0.998 32 H 0.260 0.740 33 H 0.340 0.660 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.056 0.944 37 H 0.040 0.960 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.530 2.761 17.377 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.016 0.984 4 C -0.551 4.551 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.319 5.319 13 C -0.066 4.066 14 C -0.010 4.010 15 O -0.294 6.294 16 C -0.034 4.034 17 C -0.005 4.005 18 N -0.314 5.314 19 C 0.354 3.646 20 O -0.293 6.293 21 C -0.134 4.134 22 C -0.065 4.065 23 C -0.113 4.113 24 C -0.120 4.120 25 C -0.066 4.066 26 C -0.148 4.148 27 C 0.366 3.634 28 O -0.347 6.347 29 H 0.099 0.901 30 H 0.050 0.950 31 H 0.021 0.979 32 H 0.070 0.930 33 H 0.158 0.842 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.162 0.838 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 16.595 2.211 17.235 24.027 hybrid contribution 0.770 0.093 -0.772 1.095 sum 17.366 2.303 16.463 24.039 Atomic orbital electron populations 1.21720 0.98070 0.99231 0.99209 1.19082 0.92376 0.92340 0.85846 0.98350 1.21249 1.31007 1.12411 0.90467 0.92262 1.24909 0.95125 0.95038 0.98974 1.69893 1.36972 1.23020 1.23382 0.86591 0.79182 0.79754 0.82064 1.20234 1.21375 1.20276 1.60765 1.32880 1.32394 1.05843 1.21875 0.99015 0.94342 0.91369 1.22674 0.82262 0.98213 0.97819 1.88017 1.28099 1.74278 1.38976 1.22806 0.93206 0.96942 0.90446 1.21848 0.88697 0.84561 1.05389 1.46464 1.46098 1.27869 1.10941 1.18308 0.80129 0.82695 0.83432 1.90927 1.45445 1.68025 1.24874 1.20675 1.00273 0.97533 0.94954 1.20900 0.93776 0.91165 1.00707 1.21491 0.96305 0.98101 0.95377 1.21438 0.99016 0.97751 0.93810 1.20767 0.93568 0.91640 1.00649 1.20586 1.01556 0.97687 0.94932 1.18364 0.77779 0.82885 0.84416 1.90785 1.60325 1.66829 1.16741 0.90134 0.95023 0.97892 0.93015 0.84166 0.90684 0.95803 0.92538 0.94165 0.91278 0.93206 0.87367 0.87334 0.83774 0.84071 0.84201 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.22 9.19 37.16 0.34 -2.88 16 2 C 0.21 5.70 2.60 -68.86 -0.18 5.52 16 3 H 0.00 -0.03 7.80 -51.93 -0.40 -0.44 16 4 C -0.51 -14.93 8.59 -34.44 -0.30 -15.22 16 5 H 0.06 1.72 7.62 -52.49 -0.40 1.32 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -26.48 11.32 55.43 0.63 -25.85 16 8 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 12 N -0.69 -15.98 6.30 -107.95 -0.68 -16.66 16 13 C 0.06 1.26 5.90 -3.83 -0.02 1.23 16 14 C 0.07 1.06 6.28 37.15 0.23 1.29 16 15 O -0.37 -6.12 9.48 -35.23 -0.33 -6.45 16 16 C 0.04 0.53 6.28 37.16 0.23 0.77 16 17 C 0.11 1.29 6.14 -4.04 -0.02 1.27 16 18 N -0.57 -7.32 2.59 -117.62 -0.30 -7.63 16 19 C 0.57 8.24 7.73 -12.46 -0.10 8.14 16 20 O -0.43 -7.78 17.63 5.41 0.10 -7.68 16 21 C -0.13 -1.53 6.40 -104.83 -0.67 -2.21 16 22 C -0.05 -0.44 10.09 -39.32 -0.40 -0.84 16 23 C -0.09 -0.61 10.04 -39.45 -0.40 -1.01 16 24 C -0.10 -0.59 10.04 -39.45 -0.40 -0.99 16 25 C -0.05 -0.36 10.09 -39.32 -0.40 -0.76 16 26 C -0.14 -1.54 6.41 -104.84 -0.67 -2.21 16 27 C 0.58 7.10 8.02 -12.46 -0.10 7.00 16 28 O -0.47 -6.49 17.68 5.41 0.10 -6.40 16 29 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.00 0.05 7.45 -51.93 -0.39 -0.34 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.34 8.22 7.78 -39.29 -0.31 7.91 16 34 H 0.07 1.42 7.44 -51.93 -0.39 1.03 16 35 H 0.02 0.50 8.06 -51.93 -0.42 0.08 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.11 1.25 7.97 -51.93 -0.41 0.83 16 41 H 0.11 0.94 7.96 -51.93 -0.41 0.52 16 42 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 43 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 45 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -34.72 384.36 -9.05 -43.77 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.38 Total: 3.18 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -2.93 Total: 0.76 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.36 Total: -50.14 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.14 Total: -20.53 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.72 -9.05 -43.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930867171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.987 kcal (2) G-P(sol) polarization free energy of solvation -34.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds