Wall clock time and date at job start Tue Mar 31 2020 18:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47018 * 2 1 4 4 C 1.50700 * 109.47330 * 239.99608 * 2 1 3 5 5 H 1.07999 * 119.99953 * 240.00199 * 4 2 1 6 6 C 1.37880 * 119.99920 * 59.99547 * 4 2 1 7 7 N 1.31514 * 119.99894 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99814 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47106 * 60.00450 * 8 6 4 10 10 H 1.48500 * 109.46680 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47366 * 300.00114 * 8 6 4 12 12 N 1.46904 * 109.47158 * 119.99497 * 2 1 3 13 13 C 1.46897 * 111.00228 * 275.00084 * 12 2 1 14 14 C 1.52993 * 109.47364 * 180.02562 * 13 12 2 15 15 O 1.42899 * 109.47125 * 64.99788 * 14 13 12 16 16 C 1.42906 * 113.99829 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47062 * 180.02562 * 16 15 14 18 18 N 1.46497 * 109.47100 * 65.00150 * 17 16 15 19 19 C 1.34527 * 124.46173 * 269.97804 * 18 17 16 20 20 O 1.21445 * 125.70798 * 0.03494 * 19 18 17 21 21 C 1.47815 * 108.57968 * 180.02562 * 19 18 17 22 22 C 1.38565 * 134.29113 * 180.02562 * 21 19 18 23 23 C 1.38612 * 119.71975 * 179.97438 * 22 21 19 24 24 C 1.38234 * 120.45518 * 0.02900 * 23 22 21 25 25 C 1.38604 * 120.46148 * 359.95875 * 24 23 22 26 26 C 1.38570 * 119.72412 * 0.02562 * 25 24 23 27 27 C 1.34527 * 124.46351 * 89.99811 * 18 17 16 28 28 O 1.21449 * 125.70270 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.47043 * 60.00285 * 1 2 3 30 30 H 1.09001 * 109.46914 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46469 * 300.00190 * 1 2 3 32 32 H 0.96998 * 119.99784 * 179.97438 * 7 6 4 33 33 H 1.00903 * 110.99915 * 151.04241 * 12 2 1 34 34 H 1.09004 * 109.47093 * 59.99712 * 13 12 2 35 35 H 1.09001 * 109.46962 * 300.00207 * 13 12 2 36 36 H 1.08999 * 109.47111 * 304.99666 * 14 13 12 37 37 H 1.09001 * 109.47465 * 185.00416 * 14 13 12 38 38 H 1.09002 * 109.47337 * 60.00141 * 16 15 14 39 39 H 1.08998 * 109.47366 * 300.00165 * 16 15 14 40 40 H 1.09004 * 109.47148 * 305.00381 * 17 16 15 41 41 H 1.08999 * 109.47414 * 185.00158 * 17 16 15 42 42 H 1.08008 * 120.14186 * 359.68328 * 22 21 19 43 43 H 1.08000 * 119.77048 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.76600 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.14014 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1207 -4.0078 9 1 1.8259 -2.5205 -4.0075 10 1 1.8269 -0.4203 -5.2204 11 1 3.8064 -1.1212 -4.0081 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2227 2.3469 14 6 2.5963 -0.5326 3.5742 15 8 3.9446 -0.9481 3.3478 16 6 4.5223 -1.6670 4.4394 17 6 5.9590 -2.0591 4.0885 18 7 6.7741 -0.8503 3.9460 19 6 6.9460 -0.1797 2.7925 20 8 6.4571 -0.4757 1.7209 21 6 7.8294 0.9777 3.0476 22 6 8.3418 1.9960 2.2600 23 6 9.1662 2.9551 2.8273 24 6 9.4806 2.9017 4.1723 25 6 8.9753 1.8891 4.9725 26 6 8.1495 0.9236 4.4192 27 6 7.4497 -0.2647 4.9512 28 8 7.4802 -0.6488 6.1029 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 0.7094 1.1615 -3.4845 33 1 2.9174 -1.1205 1.0288 34 1 1.0871 0.6165 2.5525 35 1 2.7589 1.0463 2.1181 36 1 1.9710 -1.4079 3.7502 37 1 2.5590 0.1215 4.4454 38 1 3.9370 -2.5660 4.6329 39 1 4.5250 -1.0368 5.3287 40 1 5.9653 -2.6143 3.1505 41 1 6.3697 -2.6827 4.8826 42 1 8.1036 2.0397 1.2074 43 1 9.5663 3.7489 2.2141 44 1 10.1244 3.6545 4.6028 45 1 9.2240 1.8526 6.0228 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930867171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:57 Heat of formation + Delta-G solvation = -81.829994 kcal Electronic energy + Delta-G solvation = -28321.918153 eV Core-core repulsion = 24304.653394 eV Total energy + Delta-G solvation = -4017.264759 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.36079 -39.75514 -39.64945 -39.10217 -37.56512 -36.88798 -34.72224 -33.66292 -32.11209 -31.65870 -30.17392 -28.19647 -27.19742 -26.16930 -25.49793 -23.28084 -23.14176 -23.07139 -21.70832 -20.90629 -18.82167 -18.58804 -18.50652 -17.86751 -17.72019 -17.32632 -16.91610 -16.61609 -16.38266 -15.93444 -15.65988 -15.48024 -15.39504 -15.14211 -15.12637 -15.02889 -14.62171 -13.97789 -13.78991 -13.52995 -13.40610 -13.23567 -13.19516 -12.91133 -12.71739 -12.65937 -12.55943 -12.48667 -12.21202 -12.07500 -11.69587 -11.58465 -11.41120 -10.96036 -10.91780 -10.61888 -10.57830 -10.22134 -10.18694 -9.10345 -8.15056 -6.29013 -0.99305 -0.00991 1.00344 1.25330 1.39126 1.42206 1.49937 1.84426 2.40442 2.57102 2.63344 2.68907 3.12733 3.23599 3.59516 3.60229 3.85566 3.91629 4.05677 4.14972 4.17959 4.20754 4.21813 4.27144 4.34079 4.45048 4.49171 4.52529 4.70296 4.72814 4.83897 4.85147 4.90904 4.95865 5.05086 5.19249 5.21172 5.26969 5.45323 5.56234 5.64392 5.70303 5.85071 6.11261 6.20424 6.20778 6.44297 6.57903 6.74398 6.95556 7.40683 8.90834 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012213 B = 0.003121 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.039381 B = 8970.030732 C =10133.789101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.215 3.785 3 H -0.038 1.038 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.963 3.037 9 H -0.269 1.269 10 H -0.277 1.277 11 H -0.275 1.275 12 N -0.680 5.680 13 C 0.063 3.937 14 C 0.077 3.923 15 O -0.404 6.404 16 C 0.042 3.958 17 C 0.109 3.891 18 N -0.574 5.574 19 C 0.563 3.437 20 O -0.483 6.483 21 C -0.162 4.162 22 C -0.058 4.058 23 C -0.084 4.084 24 C -0.083 4.083 25 C -0.042 4.042 26 C -0.160 4.160 27 C 0.577 3.423 28 O -0.491 6.491 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.025 0.975 32 H 0.264 0.736 33 H 0.333 0.667 34 H 0.084 0.916 35 H 0.003 0.997 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.176 0.824 44 H 0.184 0.816 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.249 3.636 18.854 27.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 H -0.020 1.020 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.194 1.194 10 H -0.202 1.202 11 H -0.200 1.200 12 N -0.311 5.311 13 C -0.067 4.067 14 C 0.000 4.000 15 O -0.324 6.324 16 C -0.035 4.035 17 C -0.010 4.010 18 N -0.316 5.316 19 C 0.353 3.647 20 O -0.355 6.355 21 C -0.166 4.166 22 C -0.077 4.077 23 C -0.101 4.101 24 C -0.100 4.100 25 C -0.060 4.060 26 C -0.164 4.164 27 C 0.369 3.631 28 O -0.365 6.365 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.102 0.898 35 H 0.021 0.979 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.193 0.807 44 H 0.202 0.798 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 18.318 3.084 18.759 26.400 hybrid contribution 0.331 -0.075 -1.145 1.195 sum 18.649 3.010 17.614 25.828 Atomic orbital electron populations 1.21524 0.97196 0.98995 0.99217 1.18923 0.92998 0.90410 0.87036 1.02038 1.21540 1.31693 1.12702 0.91934 0.92987 1.25729 0.95091 0.95716 1.01961 1.70011 1.37415 1.23949 1.24292 0.85547 0.78563 0.78842 0.78296 1.19414 1.20226 1.20029 1.60731 1.32260 1.32671 1.05474 1.21975 0.99339 0.93747 0.91615 1.22523 0.82428 0.98688 0.96345 1.87997 1.28209 1.75103 1.41104 1.23000 0.93563 0.97541 0.89355 1.22028 0.88570 0.84533 1.05901 1.46572 1.46119 1.28105 1.10789 1.18880 0.79533 0.83276 0.82973 1.90880 1.48100 1.69781 1.26728 1.20615 1.01764 0.98002 0.96209 1.21137 0.94435 0.91506 1.00606 1.21919 0.94506 0.97464 0.96255 1.21967 0.97716 0.97269 0.93095 1.21197 0.92021 0.90761 1.02021 1.20598 1.03255 0.98280 0.94261 1.18626 0.77367 0.83191 0.83949 1.90764 1.61044 1.67509 1.17140 0.92312 0.95166 0.95634 0.92701 0.85032 0.89821 0.97867 0.91472 0.91481 0.88977 0.92593 0.88362 0.84581 0.84354 0.80652 0.79837 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.86 9.19 71.98 0.66 -5.20 16 2 C 0.21 12.01 2.60 44.17 0.11 12.12 16 3 H -0.04 -2.35 7.80 -2.39 -0.02 -2.37 16 4 C -0.54 -32.39 8.59 25.60 0.22 -32.17 16 5 H 0.05 3.12 7.62 -2.91 -0.02 3.09 16 6 C 0.01 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -55.31 11.32 21.45 0.24 -55.07 16 8 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 12 N -0.68 -32.61 6.30 -495.45 -3.12 -35.73 16 13 C 0.06 2.51 5.90 86.30 0.51 3.02 16 14 C 0.08 2.38 6.28 71.98 0.45 2.83 16 15 O -0.40 -13.44 9.48 -148.98 -1.41 -14.86 16 16 C 0.04 1.01 6.28 71.98 0.45 1.47 16 17 C 0.11 2.51 6.14 86.38 0.53 3.04 16 18 N -0.57 -15.32 2.59 -762.96 -1.97 -17.29 16 19 C 0.56 17.59 7.73 86.82 0.67 18.26 16 20 O -0.48 -19.35 17.63 -3.54 -0.06 -19.41 16 21 C -0.16 -3.94 6.40 -20.00 -0.13 -4.07 16 22 C -0.06 -1.08 10.09 22.44 0.23 -0.85 16 23 C -0.08 -0.83 10.04 22.36 0.22 -0.60 16 24 C -0.08 -0.61 10.04 22.36 0.22 -0.38 16 25 C -0.04 -0.52 10.09 22.44 0.23 -0.29 16 26 C -0.16 -3.32 6.41 -20.00 -0.13 -3.45 16 27 C 0.58 14.26 8.02 86.81 0.70 14.95 16 28 O -0.49 -13.14 17.68 -3.55 -0.06 -13.20 16 29 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 30 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.02 1.18 7.45 -2.39 -0.02 1.16 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 33 H 0.33 16.80 7.78 -89.69 -0.70 16.10 16 34 H 0.08 3.15 7.44 -2.39 -0.02 3.13 16 35 H 0.00 0.14 8.06 -2.39 -0.02 0.12 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 40 H 0.10 2.43 7.97 -2.38 -0.02 2.41 16 41 H 0.14 2.28 7.96 -2.39 -0.02 2.27 16 42 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 44 H 0.18 -0.16 8.06 -2.91 -0.02 -0.18 16 45 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -79.11 384.36 1.35 -77.76 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.31 Total: 19.76 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 5.40 Total: 9.96 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -4.85 Total: -108.09 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -1.54 Total: -47.47 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -79.11 1.35 -77.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930867171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.067 kcal (2) G-P(sol) polarization free energy of solvation -79.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds