Wall clock time and date at job start Tue Mar 31 2020 18:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47226 * 2 1 4 4 C 1.50702 * 109.47227 * 120.00097 * 2 1 3 5 5 H 1.08002 * 119.99548 * 120.00034 * 4 2 1 6 6 C 1.37872 * 120.00123 * 299.99810 * 4 2 1 7 7 N 1.31519 * 119.99852 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00211 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47151 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47131 * 120.00214 * 8 6 4 11 11 H 1.48507 * 109.46913 * 240.00117 * 8 6 4 12 12 N 1.46904 * 109.46911 * 240.00078 * 2 1 3 13 13 C 1.46897 * 111.00228 * 85.00021 * 12 2 1 14 14 C 1.52993 * 109.47364 * 180.02562 * 13 12 2 15 15 O 1.42899 * 109.47125 * 64.99788 * 14 13 12 16 16 C 1.42906 * 113.99829 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47062 * 180.02562 * 16 15 14 18 18 N 1.46497 * 109.47100 * 65.00150 * 17 16 15 19 19 C 1.34527 * 124.46173 * 269.97804 * 18 17 16 20 20 O 1.21445 * 125.70798 * 0.03494 * 19 18 17 21 21 C 1.47815 * 108.57968 * 180.02562 * 19 18 17 22 22 C 1.38565 * 134.29113 * 180.02562 * 21 19 18 23 23 C 1.38612 * 119.71975 * 179.97438 * 22 21 19 24 24 C 1.38234 * 120.45518 * 0.02900 * 23 22 21 25 25 C 1.38604 * 120.46148 * 359.95875 * 24 23 22 26 26 C 1.38570 * 119.72412 * 0.02562 * 25 24 23 27 27 C 1.34527 * 124.46351 * 89.99811 * 18 17 16 28 28 O 1.21449 * 125.70270 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46695 * 299.99981 * 1 2 3 31 31 H 1.08998 * 109.46799 * 60.00230 * 1 2 3 32 32 H 0.96992 * 120.00026 * 180.02562 * 7 6 4 33 33 H 1.00903 * 110.99915 * 321.04179 * 12 2 1 34 34 H 1.09004 * 109.47093 * 59.99712 * 13 12 2 35 35 H 1.09001 * 109.46962 * 300.00207 * 13 12 2 36 36 H 1.08999 * 109.47111 * 304.99666 * 14 13 12 37 37 H 1.09001 * 109.47465 * 185.00416 * 14 13 12 38 38 H 1.09002 * 109.47337 * 60.00141 * 16 15 14 39 39 H 1.08998 * 109.47366 * 300.00165 * 16 15 14 40 40 H 1.09004 * 109.47148 * 305.00381 * 17 16 15 41 41 H 1.08999 * 109.47414 * 185.00158 * 17 16 15 42 42 H 1.08008 * 120.14186 * 359.68328 * 22 21 19 43 43 H 1.08000 * 119.77048 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.76600 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.14014 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3227 -1.1196 4.0079 9 1 3.1476 -2.2864 3.6037 10 1 3.1474 -0.1858 4.8160 11 1 1.1679 -1.5866 4.8164 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2225 -2.3469 14 6 2.5950 -0.5332 -3.5745 15 8 1.6491 -1.5386 -3.9441 16 6 2.0341 -2.3072 -5.0857 17 6 0.9531 -3.3466 -5.3888 18 7 -0.2836 -2.6653 -5.7793 19 6 -1.2479 -2.2869 -4.9210 20 8 -1.2311 -2.4527 -3.7181 21 6 -2.3311 -1.6352 -5.6871 22 6 -3.5457 -1.0608 -5.3482 23 6 -4.3508 -0.5208 -6.3389 24 6 -3.9504 -0.5521 -7.6616 25 6 -2.7380 -1.1232 -8.0154 26 6 -1.9226 -1.6666 -7.0357 27 6 -0.6048 -2.3361 -7.0435 28 8 0.0739 -2.5537 -8.0268 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.7089 1.1612 3.4843 33 1 1.4496 -1.4980 -1.4100 34 1 2.7589 1.0462 -2.1183 35 1 1.0871 0.6163 -2.5525 36 1 3.5506 -1.0020 -3.3398 37 1 2.7261 0.1641 -4.4020 38 1 2.9779 -2.8129 -4.8819 39 1 2.1538 -1.6469 -5.9447 40 1 0.7701 -3.9504 -4.4999 41 1 1.2860 -3.9903 -6.2030 42 1 -3.8659 -1.0381 -4.3169 43 1 -5.2978 -0.0733 -6.0757 44 1 -4.5867 -0.1285 -8.4246 45 1 -2.4302 -1.1445 -9.0504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930867172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:02 Heat of formation + Delta-G solvation = -57.145235 kcal Electronic energy + Delta-G solvation = -28332.656568 eV Core-core repulsion = 24316.462220 eV Total energy + Delta-G solvation = -4016.194348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.47391 -38.88512 -38.70687 -37.93985 -36.05669 -35.57792 -33.13380 -32.34328 -31.49306 -30.14927 -28.98139 -26.23607 -25.30343 -25.00577 -24.66669 -22.46552 -22.33662 -21.50946 -20.08784 -20.01523 -18.03435 -17.55847 -16.94440 -16.67560 -16.40806 -16.17668 -15.65331 -15.46787 -14.94612 -14.73278 -14.66296 -14.35281 -14.27641 -14.07853 -14.05494 -13.22830 -13.12900 -12.90259 -12.69848 -12.53694 -12.19775 -12.01076 -11.90870 -11.40342 -11.25081 -11.07947 -10.83893 -10.72197 -10.56440 -10.41302 -10.33361 -10.01447 -9.95128 -9.75242 -9.58770 -9.55398 -9.44884 -8.86915 -8.27573 -7.08308 -5.89542 -3.92021 -0.20284 0.61069 1.77707 2.13168 2.79696 3.26429 3.37217 3.37414 3.44298 3.50468 3.74868 4.08323 4.25665 4.49087 4.51673 4.68178 4.78196 4.83140 4.85261 5.01024 5.11475 5.14006 5.25264 5.37315 5.40022 5.41937 5.55754 5.58858 5.63070 5.72813 5.74964 5.81145 5.98615 6.20709 6.30797 6.42500 6.51299 6.85007 7.02683 7.05381 7.25108 7.33189 7.50425 7.55045 7.87488 7.99806 8.39392 8.70044 8.76467 9.15751 9.72837 11.17696 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.002791 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.713659 B =10031.020755 C =11065.022622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.210 3.790 3 H 0.030 0.970 4 C -0.490 4.490 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.682 5.682 13 C 0.064 3.936 14 C 0.066 3.934 15 O -0.376 6.376 16 C 0.044 3.956 17 C 0.115 3.885 18 N -0.571 5.571 19 C 0.569 3.431 20 O -0.428 6.428 21 C -0.131 4.131 22 C -0.047 4.047 23 C -0.095 4.095 24 C -0.102 4.102 25 C -0.047 4.047 26 C -0.144 4.144 27 C 0.576 3.424 28 O -0.473 6.473 29 H 0.028 0.972 30 H 0.086 0.914 31 H 0.003 0.997 32 H 0.258 0.742 33 H 0.335 0.665 34 H 0.076 0.924 35 H 0.023 0.977 36 H 0.057 0.943 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.180 -4.111 -24.564 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.102 3.898 3 H 0.048 0.952 4 C -0.529 4.529 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.313 5.313 13 C -0.066 4.066 14 C -0.010 4.010 15 O -0.295 6.295 16 C -0.034 4.034 17 C -0.005 4.005 18 N -0.314 5.314 19 C 0.356 3.644 20 O -0.296 6.296 21 C -0.135 4.135 22 C -0.066 4.066 23 C -0.113 4.113 24 C -0.120 4.120 25 C -0.066 4.066 26 C -0.147 4.147 27 C 0.365 3.635 28 O -0.346 6.346 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.022 0.978 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.162 0.838 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.286 -4.208 -23.964 25.703 hybrid contribution -0.368 -0.140 0.512 0.646 sum -8.654 -4.348 -23.452 25.373 Atomic orbital electron populations 1.22375 1.00610 0.99311 1.00108 1.19166 0.89717 0.94188 0.86684 0.95211 1.21217 1.29800 1.12230 0.89654 0.91972 1.24957 0.95454 0.95269 0.99007 1.69906 1.37583 1.23370 1.23050 0.86463 0.78470 0.79645 0.82939 1.19766 1.21233 1.21253 1.60844 1.58274 1.09180 1.02999 1.21871 0.99074 0.95522 0.90166 1.22688 0.92475 0.89575 0.96275 1.88002 1.46006 1.49285 1.46185 1.22806 0.97020 0.93984 0.89599 1.21854 0.81282 0.94419 1.02940 1.46466 1.20749 1.55281 1.08863 1.18295 0.81979 0.77922 0.86207 1.90906 1.77176 1.49601 1.11921 1.20674 0.96564 1.02065 0.94215 1.20887 0.91060 0.93574 1.01033 1.21491 0.99813 0.97485 0.92496 1.21443 0.95696 0.97932 0.96893 1.20774 0.92529 0.94157 0.99137 1.20586 0.96018 1.03073 0.95048 1.18367 0.85532 0.77139 0.82436 1.90788 1.56475 1.51748 1.35556 0.95259 0.89526 0.97788 0.93257 0.84767 0.90588 0.95859 0.92432 0.94151 0.91230 0.93195 0.87381 0.87316 0.83827 0.84063 0.84175 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 8.94 37.16 0.33 -3.97 16 2 C 0.21 5.62 2.57 -68.86 -0.18 5.44 16 3 H 0.03 0.86 7.80 -51.93 -0.40 0.46 16 4 C -0.49 -14.22 8.84 -34.44 -0.30 -14.53 16 5 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.62 11.32 55.43 0.63 -25.99 16 8 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 N -0.68 -15.75 6.23 -107.95 -0.67 -16.42 16 13 C 0.06 1.24 5.90 -3.83 -0.02 1.21 16 14 C 0.07 1.04 6.28 37.15 0.23 1.28 16 15 O -0.38 -6.01 9.48 -35.23 -0.33 -6.35 16 16 C 0.04 0.52 6.28 37.16 0.23 0.76 16 17 C 0.11 1.25 6.14 -4.04 -0.02 1.23 16 18 N -0.57 -7.10 2.59 -117.62 -0.30 -7.41 16 19 C 0.57 7.95 7.73 -12.46 -0.10 7.85 16 20 O -0.43 -7.50 17.63 5.41 0.10 -7.41 16 21 C -0.13 -1.48 6.40 -104.83 -0.67 -2.15 16 22 C -0.05 -0.42 10.09 -39.32 -0.40 -0.81 16 23 C -0.09 -0.57 10.04 -39.45 -0.40 -0.97 16 24 C -0.10 -0.55 10.04 -39.45 -0.40 -0.95 16 25 C -0.05 -0.35 10.09 -39.32 -0.40 -0.74 16 26 C -0.14 -1.48 6.41 -104.84 -0.67 -2.15 16 27 C 0.58 6.91 8.02 -12.46 -0.10 6.81 16 28 O -0.47 -6.36 17.68 5.41 0.10 -6.26 16 29 H 0.03 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 31 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.34 7.86 8.03 -39.29 -0.32 7.54 16 34 H 0.08 1.43 8.06 -51.93 -0.42 1.01 16 35 H 0.02 0.47 7.44 -51.93 -0.39 0.09 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.11 1.21 7.97 -51.93 -0.41 0.79 16 41 H 0.11 0.91 7.96 -51.93 -0.41 0.50 16 42 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 43 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 44 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 45 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -34.61 384.69 -9.07 -43.68 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.40 Total: 3.42 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.95 Total: -0.26 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.35 Total: -49.82 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.14 Total: -20.02 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.61 -9.07 -43.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930867172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.462 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds