Wall clock time and date at job start Tue Mar 31 2020 18:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47226 * 2 1 4 4 C 1.50702 * 109.47227 * 120.00097 * 2 1 3 5 5 H 1.08002 * 119.99548 * 120.00034 * 4 2 1 6 6 C 1.37872 * 120.00123 * 299.99810 * 4 2 1 7 7 N 1.31519 * 119.99852 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00211 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47151 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47131 * 120.00214 * 8 6 4 11 11 H 1.48507 * 109.46913 * 240.00117 * 8 6 4 12 12 N 1.46904 * 109.46911 * 240.00078 * 2 1 3 13 13 C 1.46897 * 111.00228 * 85.00021 * 12 2 1 14 14 C 1.52993 * 109.47364 * 180.02562 * 13 12 2 15 15 O 1.42899 * 109.47125 * 64.99788 * 14 13 12 16 16 C 1.42906 * 113.99829 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47062 * 180.02562 * 16 15 14 18 18 N 1.46497 * 109.47100 * 65.00150 * 17 16 15 19 19 C 1.34527 * 124.46173 * 269.97804 * 18 17 16 20 20 O 1.21445 * 125.70798 * 0.03494 * 19 18 17 21 21 C 1.47815 * 108.57968 * 180.02562 * 19 18 17 22 22 C 1.38565 * 134.29113 * 180.02562 * 21 19 18 23 23 C 1.38612 * 119.71975 * 179.97438 * 22 21 19 24 24 C 1.38234 * 120.45518 * 0.02900 * 23 22 21 25 25 C 1.38604 * 120.46148 * 359.95875 * 24 23 22 26 26 C 1.38570 * 119.72412 * 0.02562 * 25 24 23 27 27 C 1.34527 * 124.46351 * 89.99811 * 18 17 16 28 28 O 1.21449 * 125.70270 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46695 * 299.99981 * 1 2 3 31 31 H 1.08998 * 109.46799 * 60.00230 * 1 2 3 32 32 H 0.96992 * 120.00026 * 180.02562 * 7 6 4 33 33 H 1.00903 * 110.99915 * 321.04179 * 12 2 1 34 34 H 1.09004 * 109.47093 * 59.99712 * 13 12 2 35 35 H 1.09001 * 109.46962 * 300.00207 * 13 12 2 36 36 H 1.08999 * 109.47111 * 304.99666 * 14 13 12 37 37 H 1.09001 * 109.47465 * 185.00416 * 14 13 12 38 38 H 1.09002 * 109.47337 * 60.00141 * 16 15 14 39 39 H 1.08998 * 109.47366 * 300.00165 * 16 15 14 40 40 H 1.09004 * 109.47148 * 305.00381 * 17 16 15 41 41 H 1.08999 * 109.47414 * 185.00158 * 17 16 15 42 42 H 1.08008 * 120.14186 * 359.68328 * 22 21 19 43 43 H 1.08000 * 119.77048 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.76600 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.14014 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3227 -1.1196 4.0079 9 1 3.1476 -2.2864 3.6037 10 1 3.1474 -0.1858 4.8160 11 1 1.1679 -1.5866 4.8164 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2225 -2.3469 14 6 2.5950 -0.5332 -3.5745 15 8 1.6491 -1.5386 -3.9441 16 6 2.0341 -2.3072 -5.0857 17 6 0.9531 -3.3466 -5.3888 18 7 -0.2836 -2.6653 -5.7793 19 6 -1.2479 -2.2869 -4.9210 20 8 -1.2311 -2.4527 -3.7181 21 6 -2.3311 -1.6352 -5.6871 22 6 -3.5457 -1.0608 -5.3482 23 6 -4.3508 -0.5208 -6.3389 24 6 -3.9504 -0.5521 -7.6616 25 6 -2.7380 -1.1232 -8.0154 26 6 -1.9226 -1.6666 -7.0357 27 6 -0.6048 -2.3361 -7.0435 28 8 0.0739 -2.5537 -8.0268 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.7089 1.1612 3.4843 33 1 1.4496 -1.4980 -1.4100 34 1 2.7589 1.0462 -2.1183 35 1 1.0871 0.6163 -2.5525 36 1 3.5506 -1.0020 -3.3398 37 1 2.7261 0.1641 -4.4020 38 1 2.9779 -2.8129 -4.8819 39 1 2.1538 -1.6469 -5.9447 40 1 0.7701 -3.9504 -4.4999 41 1 1.2860 -3.9903 -6.2030 42 1 -3.8659 -1.0381 -4.3169 43 1 -5.2978 -0.0733 -6.0757 44 1 -4.5867 -0.1285 -8.4246 45 1 -2.4302 -1.1445 -9.0504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930867172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:01 Heat of formation + Delta-G solvation = -80.905973 kcal Electronic energy + Delta-G solvation = -28333.686911 eV Core-core repulsion = 24316.462220 eV Total energy + Delta-G solvation = -4017.224691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.35626 -39.74876 -39.64726 -39.10815 -37.62231 -36.88704 -34.70017 -33.66532 -32.10721 -31.67437 -30.15881 -27.94121 -27.23238 -26.16558 -25.49277 -23.26755 -23.12821 -23.03505 -22.10458 -20.90130 -18.81625 -18.51020 -18.41559 -17.86364 -17.67202 -17.34391 -16.88076 -16.66877 -16.37887 -15.97617 -15.61430 -15.44524 -15.36178 -15.13568 -15.02349 -14.89210 -14.71868 -13.94775 -13.75620 -13.60791 -13.43381 -13.23000 -13.16404 -12.90155 -12.83033 -12.75891 -12.61453 -12.28408 -12.20134 -12.16762 -11.74668 -11.58320 -11.40662 -11.03701 -10.95031 -10.60757 -10.50202 -10.21552 -10.18213 -8.99822 -8.10387 -6.21758 -0.98867 -0.00438 1.00779 1.25635 1.41535 1.42267 1.55849 1.84776 2.43867 2.57472 2.63805 2.69008 3.17363 3.23963 3.60708 3.61411 3.86016 3.91787 4.06221 4.15512 4.18499 4.21091 4.22199 4.27617 4.34357 4.45661 4.49710 4.53009 4.68486 4.71074 4.79625 4.84434 4.88234 4.88716 4.96209 5.10205 5.21702 5.27536 5.37982 5.56683 5.66275 5.70723 5.78657 6.11511 6.19969 6.25189 6.57958 6.63122 6.78785 6.92280 7.47843 8.95998 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.002791 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.713659 B =10031.020755 C =11065.022622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.924 5.924 8 Si 0.965 3.035 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.280 1.280 12 N -0.682 5.682 13 C 0.063 3.937 14 C 0.076 3.924 15 O -0.402 6.402 16 C 0.042 3.958 17 C 0.110 3.890 18 N -0.574 5.574 19 C 0.565 3.435 20 O -0.482 6.482 21 C -0.162 4.162 22 C -0.057 4.057 23 C -0.084 4.084 24 C -0.083 4.083 25 C -0.042 4.042 26 C -0.161 4.161 27 C 0.577 3.423 28 O -0.491 6.491 29 H 0.022 0.978 30 H 0.064 0.936 31 H 0.015 0.985 32 H 0.262 0.738 33 H 0.332 0.668 34 H 0.079 0.921 35 H 0.010 0.990 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.176 0.824 44 H 0.183 0.817 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.079 -3.875 -26.554 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.106 3.894 3 H 0.022 0.978 4 C -0.553 4.553 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.790 3.210 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.205 1.205 12 N -0.312 5.312 13 C -0.067 4.067 14 C 0.000 4.000 15 O -0.322 6.322 16 C -0.035 4.035 17 C -0.010 4.010 18 N -0.316 5.316 19 C 0.355 3.645 20 O -0.354 6.354 21 C -0.166 4.166 22 C -0.076 4.076 23 C -0.102 4.102 24 C -0.101 4.101 25 C -0.061 4.061 26 C -0.164 4.164 27 C 0.368 3.632 28 O -0.365 6.365 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.149 0.851 34 H 0.097 0.903 35 H 0.028 0.972 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.194 0.806 44 H 0.201 0.799 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.176 -3.972 -25.997 27.854 hybrid contribution -0.185 -0.162 1.005 1.035 sum -9.361 -4.133 -24.992 27.006 Atomic orbital electron populations 1.22169 1.00430 0.98632 0.99533 1.18957 0.89718 0.92807 0.87877 0.97804 1.21462 1.30411 1.12405 0.91060 0.92839 1.25771 0.95435 0.95932 1.02004 1.70022 1.38053 1.24345 1.23984 0.85406 0.78073 0.78575 0.78940 1.19356 1.20365 1.20547 1.60756 1.57582 1.09484 1.03337 1.21951 0.98663 0.95578 0.90492 1.22517 0.92171 0.90024 0.95292 1.87979 1.46588 1.49786 1.47873 1.22997 0.98163 0.93940 0.88389 1.22019 0.80900 0.94422 1.03634 1.46575 1.20865 1.55090 1.09072 1.18848 0.82812 0.77053 0.85813 1.90860 1.78457 1.52155 1.13918 1.20616 0.97293 1.04375 0.94270 1.21136 0.90740 0.93688 1.01990 1.21922 1.00279 0.95846 0.92106 1.21963 0.94880 0.95735 0.97525 1.21191 0.92569 0.92830 0.99484 1.20593 0.95722 1.04757 0.95365 1.18645 0.86088 0.76645 0.81822 1.90766 1.57247 1.52712 1.35809 0.95848 0.91677 0.96582 0.92932 0.85116 0.90299 0.97169 0.91752 0.91520 0.89103 0.92650 0.88235 0.84689 0.84167 0.80639 0.79925 0.82117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.99 8.94 71.98 0.64 -7.35 16 2 C 0.22 11.85 2.57 44.17 0.11 11.97 16 3 H 0.00 0.24 7.80 -2.39 -0.02 0.22 16 4 C -0.51 -30.48 8.84 25.60 0.23 -30.25 16 5 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 6 C 0.01 0.37 5.30 84.65 0.45 0.82 16 7 N -0.92 -55.44 11.32 21.45 0.24 -55.20 16 8 Si 0.96 45.82 29.54 68.60 2.03 47.85 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 N -0.68 -32.29 6.23 -495.44 -3.09 -35.38 16 13 C 0.06 2.48 5.90 86.30 0.51 2.98 16 14 C 0.08 2.36 6.28 71.98 0.45 2.81 16 15 O -0.40 -13.01 9.48 -148.98 -1.41 -14.43 16 16 C 0.04 0.99 6.28 71.98 0.45 1.44 16 17 C 0.11 2.44 6.14 86.38 0.53 2.97 16 18 N -0.57 -14.76 2.59 -762.96 -1.97 -16.74 16 19 C 0.56 16.78 7.73 86.82 0.67 17.45 16 20 O -0.48 -18.25 17.63 -3.54 -0.06 -18.31 16 21 C -0.16 -3.72 6.40 -20.00 -0.13 -3.85 16 22 C -0.06 -0.97 10.09 22.44 0.23 -0.75 16 23 C -0.08 -0.74 10.04 22.36 0.22 -0.52 16 24 C -0.08 -0.55 10.04 22.36 0.22 -0.33 16 25 C -0.04 -0.50 10.09 22.44 0.23 -0.27 16 26 C -0.16 -3.20 6.41 -20.00 -0.13 -3.33 16 27 C 0.58 13.84 8.02 86.81 0.70 14.54 16 28 O -0.49 -12.95 17.68 -3.55 -0.06 -13.02 16 29 H 0.02 1.23 8.13 -2.39 -0.02 1.21 16 30 H 0.06 3.79 6.07 -2.39 -0.01 3.77 16 31 H 0.02 0.77 7.45 -2.39 -0.02 0.75 16 32 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 33 H 0.33 16.09 8.03 -89.69 -0.72 15.37 16 34 H 0.08 3.01 8.06 -2.39 -0.02 3.00 16 35 H 0.01 0.42 7.44 -2.39 -0.02 0.41 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.10 2.36 7.97 -2.38 -0.02 2.34 16 41 H 0.14 2.20 7.96 -2.39 -0.02 2.18 16 42 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 44 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16 45 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -77.81 384.69 1.35 -76.46 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.29 Total: 20.42 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 5.39 Total: 8.34 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -4.82 Total: -107.31 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -1.54 Total: -45.75 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -77.81 1.35 -76.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930867172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.447 kcal (2) G-P(sol) polarization free energy of solvation -77.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds