Wall clock time and date at job start Tue Mar 31 2020 17:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.54039 * 2 1 4 4 C 1.54100 * 110.48696 * 237.38298 * 2 1 3 5 5 O 1.43743 * 107.29356 * 243.35156 * 4 2 1 6 6 C 1.44382 * 106.97526 * 333.48972 * 5 4 2 7 7 C 1.54810 * 110.48742 * 122.61331 * 2 1 3 8 8 H 1.08997 * 110.93647 * 21.35171 * 7 2 1 9 9 N 1.46496 * 110.90821 * 257.75593 * 7 2 1 10 10 C 1.34781 * 120.00024 * 160.84613 * 9 7 2 11 11 O 1.21351 * 119.99635 * 359.97438 * 10 9 7 12 12 C 1.49451 * 119.99983 * 180.02562 * 10 9 7 13 13 O 1.21345 * 120.00015 * 359.97438 * 12 10 9 14 14 N 1.34774 * 119.99578 * 179.97438 * 12 10 9 15 15 C 1.46508 * 119.99876 * 179.97438 * 14 12 10 16 16 C 1.50700 * 109.47068 * 180.02562 * 15 14 12 17 17 C 1.38630 * 119.74498 * 90.00309 * 16 15 14 18 18 C 1.37623 * 120.24117 * 180.22751 * 17 16 15 19 19 C 1.40707 * 119.74849 * 359.52215 * 18 17 16 20 20 C 1.41400 * 120.24843 * 180.22492 * 19 18 17 21 21 H 1.07994 * 120.00480 * 204.52708 * 20 19 18 22 22 C 1.39950 * 119.99509 * 24.53120 * 20 19 18 23 23 N 1.30821 * 119.99991 * 17.72383 * 22 20 19 24 24 Si 1.86800 * 119.99756 * 197.72017 * 22 20 19 25 25 H 1.48499 * 109.47128 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46931 * 119.99981 * 24 22 20 27 27 H 1.48490 * 109.47155 * 239.99623 * 24 22 20 28 28 C 1.40715 * 119.51064 * 0.47652 * 19 18 17 29 29 C 1.37618 * 119.74364 * 359.74989 * 28 19 18 30 30 H 1.08992 * 109.46938 * 297.38477 * 1 2 3 31 31 H 1.09004 * 109.46722 * 57.38401 * 1 2 3 32 32 H 1.09004 * 109.46875 * 177.38383 * 1 2 3 33 33 H 1.09003 * 109.87576 * 123.92916 * 4 2 1 34 34 H 1.08996 * 110.00801 * 2.84601 * 4 2 1 35 35 H 1.09006 * 110.61541 * 281.56095 * 6 5 4 36 36 H 1.08998 * 110.75376 * 158.62456 * 6 5 4 37 37 H 0.97003 * 120.00244 * 340.84159 * 9 7 2 38 38 H 0.96992 * 120.00420 * 0.02562 * 14 12 10 39 39 H 1.09000 * 109.46861 * 60.00225 * 15 14 12 40 40 H 1.09003 * 109.46797 * 300.00491 * 15 14 12 41 41 H 1.08001 * 119.88189 * 359.95744 * 17 16 15 42 42 H 1.08002 * 120.12205 * 179.72192 * 18 17 16 43 43 H 0.97005 * 119.99803 * 180.02562 * 23 22 20 44 44 H 1.08002 * 120.12804 * 179.73261 * 28 19 18 45 45 H 1.08002 * 119.87235 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0694 -0.7781 -1.2159 5 8 2.7956 -1.9109 -0.7104 6 6 3.2660 -1.5561 0.6077 7 6 2.0719 -0.7816 1.2215 8 1 1.3200 -1.4693 1.6086 9 7 2.5267 0.1357 2.2693 10 6 2.6677 -0.3042 3.5355 11 8 2.4174 -1.4600 3.8076 12 6 3.1312 0.6318 4.6044 13 8 3.3810 1.7876 4.3324 14 7 3.2716 0.1919 5.8706 15 6 3.7265 1.1093 6.9185 16 6 3.7994 0.3746 8.2323 17 6 4.9746 -0.2620 8.6001 18 6 5.0510 -0.9398 9.7954 19 6 3.9337 -0.9765 10.6498 20 6 4.0020 -1.6658 11.8826 21 1 3.0992 -2.0372 12.3444 22 6 5.2397 -1.8666 12.5042 23 7 6.2724 -1.1439 12.1541 24 14 5.4169 -3.1665 13.8340 25 1 4.1110 -3.8418 14.0433 26 1 6.4301 -4.1681 13.4152 27 1 5.8506 -2.5233 15.1002 28 6 2.7460 -0.3267 10.2661 29 6 2.6908 0.3411 9.0640 30 1 -0.3633 0.4727 0.9124 31 1 -0.3633 0.5539 -0.8657 32 1 -0.3633 -1.0266 -0.0469 33 1 2.7351 -0.1409 -1.7981 34 1 1.2417 -1.1165 -1.8391 35 1 4.1456 -0.9157 0.5418 36 1 3.4857 -2.4491 1.1928 37 1 2.7265 1.0597 2.0518 38 1 3.0723 -0.7320 6.0880 39 1 3.0252 1.9392 7.0043 40 1 4.7140 1.4930 6.6619 41 1 5.8321 -0.2297 7.9442 42 1 5.9662 -1.4389 10.0779 43 1 7.1304 -1.2834 12.5847 44 1 1.8810 -0.3522 10.9123 45 1 1.7805 0.8409 8.7676 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930905046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:50 Heat of formation + Delta-G solvation = -124.803066 kcal Electronic energy + Delta-G solvation = -27105.173800 eV Core-core repulsion = 23086.045588 eV Total energy + Delta-G solvation = -4019.128212 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.91181 -40.70639 -39.68662 -39.19222 -36.65506 -35.96576 -35.08789 -33.76990 -32.16049 -31.19256 -30.16522 -28.87311 -27.25100 -26.35005 -24.83821 -23.20537 -22.91587 -21.98683 -21.86438 -21.27989 -19.61736 -19.25606 -18.33344 -17.39156 -17.27200 -17.22638 -16.94852 -16.48043 -16.13973 -16.02592 -15.73172 -15.62295 -15.35528 -14.98658 -14.75504 -14.70408 -14.27340 -13.84535 -13.63633 -13.60445 -13.49718 -13.33671 -13.19500 -13.00654 -12.86314 -12.75841 -12.42021 -12.40316 -12.16674 -11.92720 -11.85437 -11.51008 -11.31432 -11.07147 -10.85090 -10.79694 -10.32440 -10.21859 -9.41209 -9.30696 -8.68766 -6.38667 0.28578 0.75428 1.12554 1.28139 1.38381 1.51637 1.53708 2.08335 2.18902 2.50403 2.76058 3.01305 3.25170 3.43560 3.69501 3.73054 3.79618 3.98330 4.10837 4.14998 4.28445 4.41415 4.49897 4.63471 4.65359 4.66192 4.72433 4.72894 4.83400 4.90183 4.97400 5.03294 5.13276 5.13791 5.18446 5.30571 5.33965 5.41694 5.67021 5.77250 5.83865 5.93602 6.07466 6.17069 6.33659 6.34971 6.65965 6.67738 6.89643 6.90177 6.98955 8.27964 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024310 B = 0.001918 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.518073 B =14596.970995 C =14990.066158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 H 0.110 0.890 4 C 0.046 3.954 5 O -0.393 6.393 6 C 0.036 3.964 7 C 0.112 3.888 8 H 0.097 0.903 9 N -0.676 5.676 10 C 0.514 3.486 11 O -0.539 6.539 12 C 0.504 3.496 13 O -0.546 6.546 14 N -0.683 5.683 15 C 0.191 3.809 16 C -0.233 4.233 17 C -0.081 4.081 18 C -0.194 4.194 19 C 0.086 3.914 20 C -0.495 4.495 21 H 0.077 0.923 22 C 0.035 3.965 23 N -0.819 5.819 24 Si 0.982 3.018 25 H -0.258 1.258 26 H -0.264 1.264 27 H -0.265 1.265 28 C -0.245 4.245 29 C -0.067 4.067 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.423 0.577 38 H 0.413 0.587 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.290 0.710 44 H 0.099 0.901 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.840 3.025 -22.431 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 H 0.128 0.872 4 C -0.030 4.030 5 O -0.311 6.311 6 C -0.041 4.041 7 C 0.008 3.992 8 H 0.115 0.885 9 N -0.331 5.331 10 C 0.294 3.706 11 O -0.415 6.415 12 C 0.284 3.716 13 O -0.424 6.424 14 N -0.334 5.334 15 C 0.069 3.931 16 C -0.235 4.235 17 C -0.100 4.100 18 C -0.214 4.214 19 C 0.083 3.917 20 C -0.524 4.524 21 H 0.095 0.905 22 C -0.181 4.181 23 N -0.445 5.445 24 Si 0.802 3.198 25 H -0.182 1.182 26 H -0.189 1.189 27 H -0.190 1.190 28 C -0.264 4.264 29 C -0.085 4.085 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.262 0.738 38 H 0.250 0.750 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.565 2.891 -22.492 23.608 hybrid contribution 0.364 -0.382 1.160 1.275 sum -6.201 2.509 -21.331 22.356 Atomic orbital electron populations 1.21839 0.92292 1.02732 1.03174 1.22788 0.98411 1.00892 0.92308 0.87169 1.23469 0.96585 0.87439 0.95533 1.88909 1.72714 1.38510 1.30975 1.23925 0.96361 1.00389 0.83474 1.22803 0.96901 0.91999 0.87547 0.88495 1.45575 1.65802 1.15583 1.06159 1.20165 0.78575 0.87462 0.84378 1.90792 1.49471 1.18897 1.82378 1.20170 0.79522 0.87746 0.84153 1.90731 1.50918 1.18541 1.82241 1.46294 1.64173 1.15962 1.06989 1.19983 0.99804 0.90493 0.82800 1.19179 0.95256 1.11020 0.98022 1.20788 0.96676 0.96777 0.95746 1.21279 0.99822 1.05377 0.94884 1.18035 0.91995 0.89034 0.92615 1.19931 0.94447 1.32909 1.05093 0.90506 1.26784 0.94545 0.96771 0.99978 1.69871 1.02572 1.33315 1.38704 0.85160 0.79522 0.77936 0.77134 1.18165 1.18905 1.19003 1.21173 0.98985 1.06679 0.99606 1.20721 0.97054 0.97261 0.93479 0.92457 0.89978 0.92293 0.90429 0.87960 0.90717 0.89300 0.73806 0.75004 0.90569 0.91120 0.87508 0.88132 0.89977 0.88327 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.92 71.98 0.64 -0.59 16 2 C -0.13 -1.23 3.38 -9.80 -0.03 -1.26 16 3 H 0.11 0.73 7.73 -2.39 -0.02 0.71 16 4 C 0.05 0.49 7.36 72.35 0.53 1.03 16 5 O -0.39 -7.16 11.52 -148.98 -1.72 -8.87 16 6 C 0.04 0.63 7.41 72.67 0.54 1.17 16 7 C 0.11 1.79 2.96 46.29 0.14 1.93 16 8 H 0.10 1.86 7.45 -2.39 -0.02 1.85 16 9 N -0.68 -11.99 5.21 -437.72 -2.28 -14.27 16 10 C 0.51 12.77 7.89 87.27 0.69 13.46 16 11 O -0.54 -16.18 16.22 -3.25 -0.05 -16.23 16 12 C 0.50 14.03 7.89 87.27 0.69 14.72 16 13 O -0.55 -16.49 16.48 -3.23 -0.05 -16.55 16 14 N -0.68 -20.29 5.54 -468.13 -2.59 -22.88 16 15 C 0.19 6.11 5.79 85.63 0.50 6.60 16 16 C -0.23 -9.12 5.27 -19.68 -0.10 -9.22 16 17 C -0.08 -3.54 9.67 22.22 0.21 -3.33 16 18 C -0.19 -9.91 8.70 22.73 0.20 -9.71 16 19 C 0.09 4.52 5.57 -21.29 -0.12 4.40 16 20 C -0.49 -26.20 9.06 23.46 0.21 -25.99 16 21 H 0.08 3.94 7.91 -2.91 -0.02 3.91 16 22 C 0.03 1.73 5.14 85.26 0.44 2.17 16 23 N -0.82 -42.04 10.95 21.83 0.24 -41.80 16 24 Si 0.98 37.52 29.59 68.60 2.03 39.56 16 25 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 26 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 27 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 28 C -0.24 -11.57 9.80 22.73 0.22 -11.34 16 29 C -0.07 -2.72 9.67 22.22 0.21 -2.50 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.10 0.84 7.70 -2.39 -0.02 0.82 16 35 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.42 6.05 7.81 -92.71 -0.72 5.33 16 38 H 0.41 12.58 7.93 -92.71 -0.74 11.85 16 39 H 0.08 2.32 8.08 -2.39 -0.02 2.30 16 40 H 0.07 2.24 8.08 -2.39 -0.02 2.22 16 41 H 0.11 4.20 8.06 -2.91 -0.02 4.17 16 42 H 0.10 5.42 6.16 -2.91 -0.02 5.40 16 43 H 0.29 13.36 8.30 -92.70 -0.77 12.59 16 44 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 45 H 0.12 4.11 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -61.98 381.48 0.11 -61.87 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -0.43 Total: 37.65 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 4.97 Total: -18.47 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -4.64 Total: -78.95 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -1.82 Total: -41.65 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.56 kcal Total: -61.98 0.11 -61.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930905046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.933 kcal (2) G-P(sol) polarization free energy of solvation -61.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds