Wall clock time and date at job start Tue Mar 31 2020 17:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 110.56132 * 2 1 4 4 C 1.54480 * 110.50929 * 122.67321 * 2 1 3 5 5 O 1.44428 * 104.80208 * 142.62370 * 4 2 1 6 6 C 1.44429 * 105.27629 * 319.49049 * 5 4 2 7 7 C 1.54486 * 104.80406 * 40.50916 * 6 5 4 8 8 H 1.09000 * 110.62785 * 217.32339 * 7 6 5 9 9 N 1.46497 * 110.50906 * 94.66490 * 7 6 5 10 10 C 1.34775 * 119.99567 * 90.36181 * 9 7 6 11 11 O 1.21351 * 120.00469 * 359.97438 * 10 9 7 12 12 C 1.49460 * 120.00021 * 179.97438 * 10 9 7 13 13 O 1.21351 * 119.99510 * 0.02562 * 12 10 9 14 14 N 1.34769 * 119.99988 * 179.97438 * 12 10 9 15 15 C 1.46500 * 119.99717 * 180.02562 * 14 12 10 16 16 C 1.50703 * 109.47108 * 180.02562 * 15 14 12 17 17 C 1.38633 * 119.75264 * 90.00144 * 16 15 14 18 18 C 1.37617 * 120.24769 * 179.97438 * 17 16 15 19 19 C 1.40712 * 119.74610 * 0.28046 * 18 17 16 20 20 C 1.41400 * 120.24377 * 179.70276 * 19 18 17 21 21 H 1.07999 * 120.00087 * 24.27936 * 20 19 18 22 22 C 1.39947 * 119.99564 * 204.28785 * 20 19 18 23 23 N 1.30821 * 120.00278 * 17.72524 * 22 20 19 24 24 Si 1.86794 * 119.99656 * 197.71822 * 22 20 19 25 25 H 1.48501 * 109.47529 * 60.00194 * 24 22 20 26 26 H 1.48506 * 109.47057 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47379 * 300.00118 * 24 22 20 28 28 C 1.40721 * 119.51082 * 359.46549 * 19 18 17 29 29 C 1.37617 * 119.74346 * 0.50994 * 28 19 18 30 30 H 1.08996 * 109.46821 * 182.67940 * 1 2 3 31 31 H 1.08993 * 109.46841 * 302.68002 * 1 2 3 32 32 H 1.08997 * 109.46959 * 62.68452 * 1 2 3 33 33 H 1.08999 * 110.37467 * 261.45666 * 4 2 1 34 34 H 1.09005 * 110.37088 * 23.68461 * 4 2 1 35 35 H 1.08998 * 110.37215 * 281.68069 * 6 5 4 36 36 H 1.08991 * 110.37538 * 159.33960 * 6 5 4 37 37 H 0.96998 * 120.00134 * 270.35322 * 9 7 6 38 38 H 0.96996 * 120.00255 * 0.02562 * 14 12 10 39 39 H 1.09002 * 109.47179 * 60.00454 * 15 14 12 40 40 H 1.09004 * 109.47652 * 300.00185 * 15 14 12 41 41 H 1.07997 * 119.87048 * 359.95699 * 17 16 15 42 42 H 1.08001 * 120.12635 * 179.97438 * 18 17 16 43 43 H 0.96999 * 120.00115 * 179.97438 * 23 22 20 44 44 H 1.07999 * 120.12797 * 180.25726 * 28 19 18 45 45 H 1.08001 * 119.87226 * 179.74551 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0713 -0.7811 1.2179 5 8 3.2399 -1.4713 0.7240 6 6 2.8758 -1.9422 -0.5919 7 6 2.0715 -0.7814 -1.2181 8 1 1.2491 -1.1657 -1.8215 9 7 2.9458 0.0710 -2.0274 10 6 3.1188 -0.1926 -3.3377 11 8 2.5507 -1.1362 -3.8471 12 6 4.0104 0.6774 -4.1636 13 8 4.5789 1.6207 -3.6542 14 7 4.1838 0.4135 -5.4738 15 6 5.0582 1.2659 -6.2832 16 6 5.0790 0.7601 -7.7026 17 6 4.1522 1.2371 -8.6166 18 6 4.1623 0.7826 -9.9156 19 6 5.1144 -0.1743 -10.3130 20 6 5.1303 -0.6532 -11.6434 21 1 4.7164 -0.0513 -12.4389 22 6 5.6822 -1.9071 -11.9290 23 7 5.8635 -2.7762 -10.9682 24 14 6.1596 -2.3399 -13.6823 25 1 7.1819 -1.3788 -14.1686 26 1 6.7165 -3.7161 -13.7183 27 1 4.9594 -2.2691 -14.5540 28 6 6.0537 -0.6473 -9.3781 29 6 6.0253 -0.1784 -8.0846 30 1 -0.3633 -1.0265 0.0480 31 1 -0.3633 0.5549 0.8649 32 1 -0.3633 0.4716 -0.9131 33 1 2.3465 -0.0937 2.0179 34 1 1.3278 -1.4955 1.5715 35 1 2.2564 -2.8360 -0.5172 36 1 3.7689 -2.1467 -1.1823 37 1 3.4001 0.8251 -1.6202 38 1 3.7297 -0.3408 -5.8809 39 1 6.0682 1.2428 -5.8740 40 1 4.6834 2.2894 -6.2680 41 1 3.4194 1.9679 -8.3080 42 1 3.4391 1.1553 -10.6259 43 1 6.2457 -3.6455 -11.1663 44 1 6.7915 -1.3786 -9.6735 45 1 6.7426 -0.5431 -7.3643 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930905052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:56 Heat of formation + Delta-G solvation = -105.822803 kcal Electronic energy + Delta-G solvation = -27193.547860 eV Core-core repulsion = 23175.242695 eV Total energy + Delta-G solvation = -4018.305166 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.89845 -39.76249 -38.33040 -37.63673 -35.34343 -34.66545 -33.53316 -33.10798 -30.46490 -29.40354 -29.29144 -27.31716 -26.65669 -24.97965 -23.58839 -22.36985 -21.11662 -21.11117 -20.21639 -20.08651 -18.45369 -17.41535 -17.32022 -16.54490 -16.33199 -15.91425 -15.66160 -15.42298 -15.26478 -14.84532 -14.31922 -14.21958 -13.89450 -13.70489 -13.47280 -13.44343 -13.28654 -12.81669 -12.55623 -12.21200 -12.08920 -12.04314 -11.87654 -11.72739 -11.61123 -11.41310 -11.33695 -11.17105 -11.07288 -10.76577 -10.50145 -10.36808 -9.80813 -9.56373 -9.50110 -9.37032 -9.24160 -8.87489 -7.60027 -7.48672 -6.89011 -4.48994 1.47373 2.25471 2.68720 2.96540 3.00704 3.02264 3.10105 3.26912 3.56148 3.77873 3.84114 3.95193 4.30115 4.44918 4.49359 4.58414 4.69640 4.88374 4.91957 5.11259 5.21221 5.24773 5.35019 5.48994 5.54736 5.56730 5.68217 5.69664 5.79747 6.03001 6.13538 6.21369 6.30180 6.35051 6.54035 6.84353 6.94958 6.95309 7.14970 7.23541 7.48425 7.48759 7.70448 7.83064 7.93027 7.97570 8.14301 8.17638 8.51182 8.76151 8.83914 10.04814 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.001980 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.324165 B =14136.278155 C =14560.959824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.047 3.953 5 O -0.371 6.371 6 C 0.034 3.966 7 C 0.112 3.888 8 H 0.111 0.889 9 N -0.696 5.696 10 C 0.507 3.493 11 O -0.516 6.516 12 C 0.498 3.502 13 O -0.535 6.535 14 N -0.681 5.681 15 C 0.182 3.818 16 C -0.251 4.251 17 C -0.067 4.067 18 C -0.230 4.230 19 C 0.118 3.882 20 C -0.456 4.456 21 H 0.080 0.920 22 C 0.075 3.925 23 N -0.785 5.785 24 Si 0.911 3.089 25 H -0.262 1.262 26 H -0.277 1.277 27 H -0.264 1.264 28 C -0.170 4.170 29 C -0.079 4.079 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.414 0.586 38 H 0.414 0.586 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.283 0.717 44 H 0.119 0.881 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.467 2.375 19.010 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 H 0.112 0.888 4 C -0.030 4.030 5 O -0.290 6.290 6 C -0.044 4.044 7 C 0.007 3.993 8 H 0.129 0.871 9 N -0.350 5.350 10 C 0.289 3.711 11 O -0.391 6.391 12 C 0.278 3.722 13 O -0.413 6.413 14 N -0.333 5.333 15 C 0.061 3.939 16 C -0.253 4.253 17 C -0.086 4.086 18 C -0.250 4.250 19 C 0.115 3.885 20 C -0.485 4.485 21 H 0.098 0.902 22 C -0.144 4.144 23 N -0.409 5.409 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.202 1.202 27 H -0.189 1.189 28 C -0.189 4.189 29 C -0.098 4.098 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.251 0.749 38 H 0.250 0.750 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.137 0.863 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.179 2.082 19.123 20.532 hybrid contribution -0.026 -0.332 -0.899 0.958 sum -7.205 1.751 18.224 19.675 Atomic orbital electron populations 1.21793 0.92867 1.02625 1.02793 1.22861 0.97540 1.00928 0.94024 0.88813 1.23556 0.88220 0.95126 0.96077 1.89185 1.35008 1.73780 1.30990 1.23914 1.00562 0.95900 0.83992 1.22550 0.93402 0.91068 0.92285 0.87097 1.45803 1.48019 1.32678 1.08540 1.20510 0.82383 0.85272 0.82982 1.90782 1.47188 1.29205 1.71883 1.20020 0.82993 0.85374 0.83852 1.90732 1.48710 1.29867 1.72018 1.46506 1.46665 1.32449 1.07651 1.20140 0.92821 0.92567 0.88342 1.18914 1.04881 1.08356 0.93168 1.20403 0.96499 0.97968 0.93719 1.20967 1.02339 1.06291 0.95358 1.17682 0.88562 0.89167 0.93076 1.19648 1.33742 1.01102 0.94034 0.90230 1.25970 0.93019 0.95865 0.99559 1.69807 1.31105 1.05548 1.34484 0.86324 0.79976 0.78129 0.82099 1.18695 1.20231 1.18895 1.21314 1.01057 1.03667 0.92875 1.20558 0.97116 0.95996 0.96098 0.91939 0.91696 0.91754 0.88691 0.91682 0.90859 0.88395 0.74910 0.74965 0.91660 0.91735 0.89313 0.88816 0.90550 0.86316 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 8.97 37.16 0.33 -0.40 16 2 C -0.13 -0.87 3.48 -89.05 -0.31 -1.18 16 3 H 0.09 0.58 7.70 -51.93 -0.40 0.18 16 4 C 0.05 0.31 7.19 37.93 0.27 0.58 16 5 O -0.37 -3.70 11.65 -35.23 -0.41 -4.11 16 6 C 0.03 0.32 7.35 37.94 0.28 0.60 16 7 C 0.11 1.01 3.13 -66.36 -0.21 0.80 16 8 H 0.11 1.05 7.14 -51.93 -0.37 0.68 16 9 N -0.70 -7.53 5.08 -52.71 -0.27 -7.80 16 10 C 0.51 7.10 7.89 -11.58 -0.09 7.00 16 11 O -0.52 -8.29 16.13 5.50 0.09 -8.20 16 12 C 0.50 7.82 7.89 -11.58 -0.09 7.73 16 13 O -0.54 -9.15 16.48 5.50 0.09 -9.06 16 14 N -0.68 -11.25 5.54 -61.90 -0.34 -11.59 16 15 C 0.18 3.19 5.79 -5.19 -0.03 3.16 16 16 C -0.25 -5.14 5.27 -104.33 -0.55 -5.69 16 17 C -0.07 -1.42 9.67 -39.66 -0.38 -1.80 16 18 C -0.23 -5.40 9.80 -38.87 -0.38 -5.78 16 19 C 0.12 3.02 5.57 -106.82 -0.60 2.42 16 20 C -0.46 -11.65 9.05 -37.74 -0.34 -12.00 16 21 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 22 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 23 N -0.79 -19.60 10.95 55.55 0.61 -18.99 16 24 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 25 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 26 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 27 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 28 C -0.17 -4.22 8.70 -38.87 -0.34 -4.56 16 29 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 30 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.35 7.82 -51.93 -0.41 -0.06 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 1.04 8.06 -51.93 -0.42 0.62 16 37 H 0.41 4.12 7.85 -40.82 -0.32 3.80 16 38 H 0.41 6.99 7.94 -40.82 -0.32 6.67 16 39 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 40 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 41 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 43 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 44 H 0.12 3.06 6.16 -52.49 -0.32 2.74 16 45 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -28.44 381.16 -8.76 -37.20 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -6.33 Total: 13.34 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -2.91 Total: -9.51 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.00 Total: -38.38 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.23 Total: -21.37 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.44 -8.76 -37.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930905052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.625 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds