Wall clock time and date at job start Tue Mar 31 2020 17:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 110.56132 * 2 1 4 4 C 1.54480 * 110.50929 * 122.67321 * 2 1 3 5 5 O 1.44428 * 104.80208 * 142.62370 * 4 2 1 6 6 C 1.44429 * 105.27629 * 319.49049 * 5 4 2 7 7 C 1.54486 * 104.80406 * 40.50916 * 6 5 4 8 8 H 1.09000 * 110.62785 * 217.32339 * 7 6 5 9 9 N 1.46497 * 110.50906 * 94.66490 * 7 6 5 10 10 C 1.34775 * 119.99567 * 90.36181 * 9 7 6 11 11 O 1.21351 * 120.00469 * 359.97438 * 10 9 7 12 12 C 1.49460 * 120.00021 * 179.97438 * 10 9 7 13 13 O 1.21351 * 119.99510 * 0.02562 * 12 10 9 14 14 N 1.34769 * 119.99988 * 179.97438 * 12 10 9 15 15 C 1.46500 * 119.99717 * 180.02562 * 14 12 10 16 16 C 1.50703 * 109.47108 * 180.02562 * 15 14 12 17 17 C 1.38633 * 119.75264 * 90.00144 * 16 15 14 18 18 C 1.37617 * 120.24769 * 179.97438 * 17 16 15 19 19 C 1.40712 * 119.74610 * 0.28046 * 18 17 16 20 20 C 1.41400 * 120.24377 * 179.70276 * 19 18 17 21 21 H 1.07999 * 120.00087 * 24.27936 * 20 19 18 22 22 C 1.39947 * 119.99564 * 204.28785 * 20 19 18 23 23 N 1.30821 * 120.00278 * 17.72524 * 22 20 19 24 24 Si 1.86794 * 119.99656 * 197.71822 * 22 20 19 25 25 H 1.48501 * 109.47529 * 60.00194 * 24 22 20 26 26 H 1.48506 * 109.47057 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47379 * 300.00118 * 24 22 20 28 28 C 1.40721 * 119.51082 * 359.46549 * 19 18 17 29 29 C 1.37617 * 119.74346 * 0.50994 * 28 19 18 30 30 H 1.08996 * 109.46821 * 182.67940 * 1 2 3 31 31 H 1.08993 * 109.46841 * 302.68002 * 1 2 3 32 32 H 1.08997 * 109.46959 * 62.68452 * 1 2 3 33 33 H 1.08999 * 110.37467 * 261.45666 * 4 2 1 34 34 H 1.09005 * 110.37088 * 23.68461 * 4 2 1 35 35 H 1.08998 * 110.37215 * 281.68069 * 6 5 4 36 36 H 1.08991 * 110.37538 * 159.33960 * 6 5 4 37 37 H 0.96998 * 120.00134 * 270.35322 * 9 7 6 38 38 H 0.96996 * 120.00255 * 0.02562 * 14 12 10 39 39 H 1.09002 * 109.47179 * 60.00454 * 15 14 12 40 40 H 1.09004 * 109.47652 * 300.00185 * 15 14 12 41 41 H 1.07997 * 119.87048 * 359.95699 * 17 16 15 42 42 H 1.08001 * 120.12635 * 179.97438 * 18 17 16 43 43 H 0.96999 * 120.00115 * 179.97438 * 23 22 20 44 44 H 1.07999 * 120.12797 * 180.25726 * 28 19 18 45 45 H 1.08001 * 119.87226 * 179.74551 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0713 -0.7811 1.2179 5 8 3.2399 -1.4713 0.7240 6 6 2.8758 -1.9422 -0.5919 7 6 2.0715 -0.7814 -1.2181 8 1 1.2491 -1.1657 -1.8215 9 7 2.9458 0.0710 -2.0274 10 6 3.1188 -0.1926 -3.3377 11 8 2.5507 -1.1362 -3.8471 12 6 4.0104 0.6774 -4.1636 13 8 4.5789 1.6207 -3.6542 14 7 4.1838 0.4135 -5.4738 15 6 5.0582 1.2659 -6.2832 16 6 5.0790 0.7601 -7.7026 17 6 4.1522 1.2371 -8.6166 18 6 4.1623 0.7826 -9.9156 19 6 5.1144 -0.1743 -10.3130 20 6 5.1303 -0.6532 -11.6434 21 1 4.7164 -0.0513 -12.4389 22 6 5.6822 -1.9071 -11.9290 23 7 5.8635 -2.7762 -10.9682 24 14 6.1596 -2.3399 -13.6823 25 1 7.1819 -1.3788 -14.1686 26 1 6.7165 -3.7161 -13.7183 27 1 4.9594 -2.2691 -14.5540 28 6 6.0537 -0.6473 -9.3781 29 6 6.0253 -0.1784 -8.0846 30 1 -0.3633 -1.0265 0.0480 31 1 -0.3633 0.5549 0.8649 32 1 -0.3633 0.4716 -0.9131 33 1 2.3465 -0.0937 2.0179 34 1 1.3278 -1.4955 1.5715 35 1 2.2564 -2.8360 -0.5172 36 1 3.7689 -2.1467 -1.1823 37 1 3.4001 0.8251 -1.6202 38 1 3.7297 -0.3408 -5.8809 39 1 6.0682 1.2428 -5.8740 40 1 4.6834 2.2894 -6.2680 41 1 3.4194 1.9679 -8.3080 42 1 3.4391 1.1553 -10.6259 43 1 6.2457 -3.6455 -11.1663 44 1 6.7915 -1.3786 -9.6735 45 1 6.7426 -0.5431 -7.3643 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930905052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:55 Heat of formation + Delta-G solvation = -124.687482 kcal Electronic energy + Delta-G solvation = -27194.365894 eV Core-core repulsion = 23175.242695 eV Total energy + Delta-G solvation = -4019.123200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.92865 -40.70346 -39.66673 -39.18223 -36.61964 -35.86235 -35.07677 -33.83860 -32.16066 -31.19318 -30.10772 -28.87782 -27.20400 -26.32795 -24.88183 -23.30568 -22.91623 -21.87865 -21.83678 -21.23207 -19.59124 -19.25101 -18.25083 -17.54313 -17.23435 -17.20030 -16.74194 -16.60593 -16.53168 -15.96981 -15.71096 -15.65130 -15.31080 -14.94429 -14.80329 -14.22437 -14.19222 -13.91854 -13.84274 -13.62961 -13.45512 -13.38126 -12.95434 -12.83835 -12.80428 -12.73249 -12.51369 -12.43542 -12.12926 -11.97380 -11.85828 -11.53984 -11.30803 -11.07797 -11.04592 -10.77138 -10.28403 -10.20031 -9.41355 -9.30640 -8.68238 -6.38550 0.28362 0.76563 1.12604 1.31693 1.38498 1.49395 1.56137 2.07943 2.18880 2.54655 2.80957 2.94104 3.31014 3.42987 3.70467 3.73096 3.91533 3.99916 4.10860 4.24308 4.28234 4.41564 4.49470 4.53038 4.63335 4.65831 4.70300 4.71643 4.81918 4.95630 5.02957 5.03242 5.12808 5.17406 5.20085 5.31187 5.33872 5.41658 5.66932 5.69647 5.85029 5.95153 6.07166 6.17186 6.32825 6.34724 6.65410 6.67028 6.89115 6.90073 6.99029 8.27990 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.001980 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.324165 B =14136.278155 C =14560.959824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 H 0.099 0.901 4 C 0.044 3.956 5 O -0.393 6.393 6 C 0.035 3.965 7 C 0.107 3.893 8 H 0.108 0.892 9 N -0.680 5.680 10 C 0.512 3.488 11 O -0.540 6.540 12 C 0.502 3.498 13 O -0.547 6.547 14 N -0.684 5.684 15 C 0.190 3.810 16 C -0.234 4.234 17 C -0.066 4.066 18 C -0.245 4.245 19 C 0.086 3.914 20 C -0.495 4.495 21 H 0.078 0.922 22 C 0.035 3.965 23 N -0.819 5.819 24 Si 0.982 3.018 25 H -0.260 1.260 26 H -0.268 1.268 27 H -0.259 1.259 28 C -0.194 4.194 29 C -0.081 4.081 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.420 0.580 38 H 0.413 0.587 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.290 0.710 44 H 0.101 0.899 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.343 3.082 20.733 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 H 0.117 0.883 4 C -0.032 4.032 5 O -0.313 6.313 6 C -0.043 4.043 7 C 0.003 3.997 8 H 0.125 0.875 9 N -0.333 5.333 10 C 0.292 3.708 11 O -0.417 6.417 12 C 0.283 3.717 13 O -0.426 6.426 14 N -0.335 5.335 15 C 0.069 3.931 16 C -0.235 4.235 17 C -0.085 4.085 18 C -0.264 4.264 19 C 0.084 3.916 20 C -0.524 4.524 21 H 0.096 0.904 22 C -0.181 4.181 23 N -0.444 5.444 24 Si 0.803 3.197 25 H -0.185 1.185 26 H -0.192 1.192 27 H -0.183 1.183 28 C -0.214 4.214 29 C -0.100 4.100 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.258 0.742 38 H 0.249 0.751 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.137 0.863 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.119 0.881 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.065 2.813 20.896 22.574 hybrid contribution 0.206 -0.461 -1.199 1.302 sum -7.859 2.352 19.696 21.336 Atomic orbital electron populations 1.21792 0.91632 1.03215 1.03190 1.22848 0.98416 1.00722 0.92480 0.88272 1.23775 0.87613 0.95573 0.96269 1.89162 1.36776 1.74291 1.31031 1.23878 0.99998 0.96548 0.83904 1.22758 0.92860 0.91290 0.92827 0.87454 1.45810 1.47383 1.32598 1.07524 1.20160 0.82089 0.84742 0.83761 1.90781 1.48301 1.30149 1.72498 1.20225 0.82787 0.85228 0.83502 1.90727 1.49235 1.30442 1.72159 1.46323 1.46715 1.32367 1.08087 1.20015 0.93585 0.93062 0.86479 1.19182 1.03182 1.06477 0.94701 1.20716 0.96941 0.98016 0.92806 1.21171 1.02262 1.06319 0.96696 1.18030 0.89542 0.90365 0.93700 1.19888 1.35951 1.02253 0.94317 0.90404 1.26793 0.92347 0.95229 1.03744 1.69861 1.31922 1.06072 1.36544 0.85245 0.79632 0.78077 0.76749 1.18457 1.19231 1.18316 1.21278 1.01371 1.04506 0.94215 1.20785 0.97815 0.96024 0.95395 0.91439 0.90076 0.92445 0.87177 0.90198 0.89484 0.90167 0.74239 0.75106 0.91087 0.90452 0.86332 0.88274 0.89976 0.88108 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.97 71.99 0.65 -0.44 16 2 C -0.13 -1.32 3.48 -9.77 -0.03 -1.36 16 3 H 0.10 0.96 7.70 -2.39 -0.02 0.94 16 4 C 0.04 0.47 7.19 72.49 0.52 0.99 16 5 O -0.39 -7.22 11.65 -148.98 -1.74 -8.96 16 6 C 0.03 0.61 7.35 72.49 0.53 1.14 16 7 C 0.11 1.76 3.13 46.01 0.14 1.90 16 8 H 0.11 1.90 7.14 -2.39 -0.02 1.88 16 9 N -0.68 -13.75 5.08 -439.04 -2.23 -15.98 16 10 C 0.51 13.74 7.89 87.27 0.69 14.43 16 11 O -0.54 -16.99 16.13 -3.25 -0.05 -17.05 16 12 C 0.50 14.99 7.89 87.27 0.69 15.68 16 13 O -0.55 -17.65 16.48 -3.25 -0.05 -17.71 16 14 N -0.68 -21.52 5.54 -468.13 -2.59 -24.11 16 15 C 0.19 6.24 5.79 85.63 0.50 6.74 16 16 C -0.23 -9.27 5.27 -19.67 -0.10 -9.37 16 17 C -0.07 -2.72 9.67 22.22 0.21 -2.51 16 18 C -0.24 -11.61 9.80 22.73 0.22 -11.38 16 19 C 0.09 4.55 5.57 -21.29 -0.12 4.43 16 20 C -0.50 -26.21 9.05 23.46 0.21 -25.99 16 21 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 22 C 0.03 1.72 5.14 85.26 0.44 2.16 16 23 N -0.82 -42.19 10.95 21.83 0.24 -41.96 16 24 Si 0.98 37.50 29.59 68.60 2.03 39.53 16 25 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 26 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 27 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 28 C -0.19 -9.97 8.70 22.73 0.20 -9.77 16 29 C -0.08 -3.60 9.67 22.22 0.21 -3.38 16 30 H 0.07 0.47 8.08 -2.39 -0.02 0.45 16 31 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.62 7.82 -2.38 -0.02 0.61 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.68 8.06 -2.39 -0.02 1.66 16 37 H 0.42 7.62 7.85 -92.71 -0.73 6.89 16 38 H 0.41 13.50 7.94 -92.71 -0.74 12.77 16 39 H 0.07 2.29 8.08 -2.39 -0.02 2.27 16 40 H 0.08 2.39 8.08 -2.38 -0.02 2.37 16 41 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 44 H 0.10 5.45 6.16 -2.91 -0.02 5.43 16 45 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -62.27 381.16 0.13 -62.14 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: -0.43 Total: 40.81 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 4.96 Total: -16.73 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -4.58 Total: -82.05 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -1.84 Total: -43.71 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -62.27 0.13 -62.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930905052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.547 kcal (2) G-P(sol) polarization free energy of solvation -62.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds