Wall clock time and date at job start Tue Mar 31 2020 17:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.45493 * 2 1 4 4 C 1.54477 * 110.62650 * 122.68319 * 2 1 3 5 5 O 1.44418 * 104.80446 * 142.68000 * 4 2 1 6 6 C 1.44422 * 105.27596 * 319.48961 * 5 4 2 7 7 C 1.54477 * 104.80202 * 40.50854 * 6 5 4 8 8 H 1.09003 * 110.51187 * 94.66844 * 7 6 5 9 9 N 1.46497 * 110.51134 * 217.23791 * 7 6 5 10 10 C 1.34779 * 120.00149 * 273.55141 * 9 7 6 11 11 O 1.21347 * 120.00141 * 359.97438 * 10 9 7 12 12 C 1.49452 * 119.99898 * 179.97438 * 10 9 7 13 13 O 1.21347 * 119.99961 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00010 * 179.97438 * 12 10 9 15 15 C 1.46502 * 119.99922 * 180.02562 * 14 12 10 16 16 C 1.50700 * 109.47091 * 180.02562 * 15 14 12 17 17 C 1.38635 * 119.74573 * 269.72891 * 16 15 14 18 18 C 1.37626 * 120.24426 * 179.76144 * 17 16 15 19 19 C 1.40716 * 119.74459 * 0.52926 * 18 17 16 20 20 C 1.41391 * 120.24195 * 179.74217 * 19 18 17 21 21 H 1.08002 * 120.00334 * 204.36487 * 20 19 18 22 22 C 1.39947 * 120.00192 * 24.37081 * 20 19 18 23 23 N 1.30824 * 119.99990 * 17.85493 * 22 20 19 24 24 Si 1.86800 * 120.00186 * 197.86014 * 22 20 19 25 25 H 1.48502 * 109.47028 * 89.99698 * 24 22 20 26 26 H 1.48500 * 109.47205 * 209.99836 * 24 22 20 27 27 H 1.48503 * 109.46880 * 329.99457 * 24 22 20 28 28 C 1.40712 * 119.50992 * 359.72188 * 19 18 17 29 29 C 1.37613 * 119.74864 * 0.02562 * 28 19 18 30 30 H 1.08999 * 109.47188 * 182.60506 * 1 2 3 31 31 H 1.09001 * 109.47615 * 302.60854 * 1 2 3 32 32 H 1.09007 * 109.47107 * 62.60918 * 1 2 3 33 33 H 1.09002 * 110.37637 * 261.51310 * 4 2 1 34 34 H 1.09002 * 110.37516 * 23.84765 * 4 2 1 35 35 H 1.09000 * 110.37083 * 281.67848 * 6 5 4 36 36 H 1.09008 * 110.37160 * 159.34184 * 6 5 4 37 37 H 0.97003 * 119.99767 * 93.54556 * 9 7 6 38 38 H 0.96993 * 119.99943 * 0.02562 * 14 12 10 39 39 H 1.09001 * 109.46889 * 299.99985 * 15 14 12 40 40 H 1.08997 * 109.47086 * 59.99855 * 15 14 12 41 41 H 1.07993 * 119.87875 * 359.97438 * 17 16 15 42 42 H 1.08006 * 120.12566 * 180.22696 * 18 17 16 43 43 H 0.96999 * 120.00175 * 180.02562 * 23 22 20 44 44 H 1.08007 * 120.12456 * 179.97438 * 28 19 18 45 45 H 1.08001 * 119.87586 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0742 -0.7807 1.2168 5 8 3.2433 -1.4684 0.7212 6 6 2.8786 -1.9394 -0.5945 7 6 2.0713 -0.7798 -1.2190 8 1 2.7199 -0.1440 -1.8217 9 7 0.9681 -1.3008 -2.0299 10 6 1.1762 -1.6268 -3.3210 11 8 2.2773 -1.4885 -3.8119 12 6 0.0508 -2.1588 -4.1481 13 8 -1.0502 -2.2976 -3.6571 14 7 0.2588 -2.4845 -5.4393 15 6 -0.8446 -3.0054 -6.2502 16 6 -0.3518 -3.2893 -7.6458 17 6 -0.4194 -2.2992 -8.6138 18 6 0.0321 -2.5457 -9.8903 19 6 0.5536 -3.8120 -10.2140 20 6 1.0155 -4.0784 -11.5235 21 1 1.0422 -5.0938 -11.8906 22 6 1.4380 -3.0265 -12.3440 23 7 1.7404 -1.8674 -11.8180 24 14 1.5702 -3.2772 -14.1904 25 1 0.2768 -2.9282 -14.8312 26 1 2.6427 -2.4049 -14.7329 27 1 1.8964 -4.6977 -14.4749 28 6 0.6125 -4.8109 -9.2246 29 6 0.1600 -4.5404 -7.9535 30 1 -0.3633 -1.0266 0.0467 31 1 -0.3634 0.5538 0.8657 32 1 -0.3634 0.4728 -0.9125 33 1 2.3490 -0.0932 2.0168 34 1 1.3332 -1.4980 1.5698 35 1 2.2610 -2.8344 -0.5194 36 1 3.7715 -2.1420 -1.1860 37 1 0.0878 -1.4111 -1.6376 38 1 1.1389 -2.3739 -5.8317 39 1 -1.2205 -3.9260 -5.8037 40 1 -1.6458 -2.2676 -6.2904 41 1 -0.8248 -1.3298 -8.3644 42 1 -0.0181 -1.7718 -10.6420 43 1 2.0330 -1.1382 -12.3868 44 1 1.0105 -5.7864 -9.4623 45 1 0.2038 -5.3057 -7.1927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930905056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:05 Heat of formation + Delta-G solvation = -98.639324 kcal Electronic energy + Delta-G solvation = -27316.223229 eV Core-core repulsion = 23298.229563 eV Total energy + Delta-G solvation = -4017.993667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.99073 -39.78842 -38.35186 -37.65272 -35.61505 -34.78589 -33.51333 -32.68092 -30.48070 -29.45089 -29.37868 -27.30552 -26.78968 -24.98768 -23.54483 -22.75558 -21.12612 -20.61545 -20.21505 -20.20996 -18.67080 -17.42566 -17.13007 -16.63492 -16.18982 -16.03014 -15.61739 -15.48844 -15.23203 -14.98936 -14.43854 -14.16785 -14.00870 -13.91041 -13.49986 -13.43029 -13.14085 -12.77631 -12.57142 -12.49173 -12.10009 -12.05509 -11.75909 -11.67760 -11.56176 -11.47352 -11.20533 -11.17430 -11.07599 -10.76116 -10.49701 -10.26765 -9.81616 -9.59535 -9.51163 -9.47995 -9.25872 -8.90100 -7.61211 -7.49633 -6.89924 -4.49871 1.44846 2.22180 2.65779 2.95585 3.00680 3.03962 3.07431 3.24984 3.54692 3.82755 3.84337 3.94076 4.24024 4.41710 4.46283 4.64466 4.68642 4.80765 4.88832 5.08189 5.17706 5.30824 5.45800 5.48018 5.55556 5.55914 5.67761 5.68024 5.77826 5.93290 6.11542 6.20144 6.28885 6.35739 6.51259 6.83503 6.90850 6.94575 7.13952 7.22517 7.45969 7.47572 7.68956 7.80964 7.92413 7.96348 8.11642 8.16420 8.50534 8.75424 8.83010 10.03876 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024599 B = 0.001984 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.990403 B =14112.549127 C =14477.981014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.134 4.134 3 H 0.097 0.903 4 C 0.047 3.953 5 O -0.370 6.370 6 C 0.034 3.966 7 C 0.113 3.887 8 H 0.108 0.892 9 N -0.700 5.700 10 C 0.506 3.494 11 O -0.513 6.513 12 C 0.498 3.502 13 O -0.536 6.536 14 N -0.680 5.680 15 C 0.182 3.818 16 C -0.252 4.252 17 C -0.079 4.079 18 C -0.170 4.170 19 C 0.117 3.883 20 C -0.456 4.456 21 H 0.080 0.920 22 C 0.075 3.925 23 N -0.785 5.785 24 Si 0.911 3.089 25 H -0.266 1.266 26 H -0.277 1.277 27 H -0.261 1.261 28 C -0.229 4.229 29 C -0.067 4.067 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.415 0.585 38 H 0.414 0.586 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.283 0.717 44 H 0.094 0.906 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.386 4.425 19.492 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 H 0.115 0.885 4 C -0.030 4.030 5 O -0.288 6.288 6 C -0.044 4.044 7 C 0.008 3.992 8 H 0.126 0.874 9 N -0.358 5.358 10 C 0.287 3.713 11 O -0.387 6.387 12 C 0.278 3.722 13 O -0.415 6.415 14 N -0.332 5.332 15 C 0.061 3.939 16 C -0.254 4.254 17 C -0.098 4.098 18 C -0.189 4.189 19 C 0.115 3.885 20 C -0.485 4.485 21 H 0.098 0.902 22 C -0.144 4.144 23 N -0.409 5.409 24 Si 0.735 3.265 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.185 1.185 28 C -0.249 4.249 29 C -0.086 4.086 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.255 0.745 38 H 0.251 0.749 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.137 0.863 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.076 4.620 19.507 20.075 hybrid contribution -0.001 0.044 -0.982 0.982 sum -1.077 4.664 18.525 19.134 Atomic orbital electron populations 1.21816 0.93511 1.02502 1.03302 1.22794 0.97396 1.00909 0.94169 0.88454 1.23557 0.88170 0.95156 0.96122 1.89178 1.34863 1.73955 1.30758 1.23904 1.00499 0.96141 0.83822 1.22429 0.88689 0.95689 0.92388 0.87414 1.46008 1.14534 1.64909 1.10384 1.20533 0.89135 0.78706 0.82909 1.90788 1.24860 1.51283 1.71782 1.20018 0.88194 0.80246 0.83764 1.90723 1.24688 1.54024 1.72056 1.46518 1.16027 1.61366 1.09278 1.20140 0.87288 0.97951 0.88482 1.18907 1.16737 0.96268 0.93447 1.20555 0.99069 0.96255 0.93914 1.21316 1.03033 0.98884 0.95669 1.17688 0.87372 0.91228 0.92245 1.19689 1.36884 0.94616 0.97281 0.90169 1.25976 0.92549 0.94487 1.01429 1.69818 1.30047 1.03171 1.37873 0.86266 0.78843 0.79664 0.81739 1.19146 1.20202 1.18503 1.20973 1.10576 0.99976 0.93383 1.20404 0.97510 0.94832 0.95839 0.91891 0.91253 0.91218 0.88611 0.91778 0.91568 0.87918 0.74496 0.74929 0.91714 0.91663 0.89331 0.86308 0.90605 0.88801 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 7.80 37.16 0.29 -0.56 16 2 C -0.13 -0.87 3.71 -89.06 -0.33 -1.20 16 3 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 4 C 0.05 0.31 7.19 37.93 0.27 0.59 16 5 O -0.37 -3.65 11.65 -35.23 -0.41 -4.06 16 6 C 0.03 0.33 7.35 37.93 0.28 0.61 16 7 C 0.11 1.03 3.39 -66.37 -0.23 0.81 16 8 H 0.11 1.09 7.67 -51.93 -0.40 0.69 16 9 N -0.70 -7.25 4.64 -52.72 -0.24 -7.49 16 10 C 0.51 6.94 7.89 -11.58 -0.09 6.85 16 11 O -0.51 -8.21 16.19 5.50 0.09 -8.12 16 12 C 0.50 7.63 7.89 -11.58 -0.09 7.54 16 13 O -0.54 -8.86 16.48 5.50 0.09 -8.77 16 14 N -0.68 -11.05 5.54 -61.91 -0.34 -11.40 16 15 C 0.18 3.14 5.79 -5.19 -0.03 3.11 16 16 C -0.25 -5.10 5.27 -104.33 -0.55 -5.65 16 17 C -0.08 -1.73 9.67 -39.66 -0.38 -2.12 16 18 C -0.17 -4.20 8.70 -38.87 -0.34 -4.54 16 19 C 0.12 3.00 5.58 -106.83 -0.60 2.40 16 20 C -0.46 -11.61 9.05 -37.74 -0.34 -11.95 16 21 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 22 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 23 N -0.78 -19.53 10.95 55.55 0.61 -18.92 16 24 Si 0.91 17.97 29.60 -169.99 -5.03 12.94 16 25 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 27 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 28 C -0.23 -5.37 9.80 -38.88 -0.38 -5.75 16 29 C -0.07 -1.41 9.67 -39.66 -0.38 -1.79 16 30 H 0.06 0.34 6.99 -51.93 -0.36 -0.02 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.44 7.74 -51.92 -0.40 0.04 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.38 7.84 -51.93 -0.41 -0.03 16 35 H 0.07 0.61 8.06 -51.93 -0.42 0.20 16 36 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 37 H 0.41 3.82 5.31 -40.82 -0.22 3.61 16 38 H 0.41 6.92 7.94 -40.82 -0.32 6.59 16 39 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 40 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 41 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.12 3.05 6.16 -52.48 -0.32 2.73 16 43 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 44 H 0.09 2.08 8.06 -52.48 -0.42 1.65 16 45 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -28.15 377.04 -8.75 -36.89 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -6.20 Total: 13.19 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -2.99 Total: -9.95 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.02 Total: -37.81 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.23 Total: -20.95 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.15 -8.75 -36.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930905056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.745 kcal (2) G-P(sol) polarization free energy of solvation -28.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds