Wall clock time and date at job start Tue Mar 31 2020 17:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.45493 * 2 1 4 4 C 1.54477 * 110.62650 * 122.68319 * 2 1 3 5 5 O 1.44418 * 104.80446 * 142.68000 * 4 2 1 6 6 C 1.44422 * 105.27596 * 319.48961 * 5 4 2 7 7 C 1.54477 * 104.80202 * 40.50854 * 6 5 4 8 8 H 1.09003 * 110.51187 * 94.66844 * 7 6 5 9 9 N 1.46497 * 110.51134 * 217.23791 * 7 6 5 10 10 C 1.34779 * 120.00149 * 273.55141 * 9 7 6 11 11 O 1.21347 * 120.00141 * 359.97438 * 10 9 7 12 12 C 1.49452 * 119.99898 * 179.97438 * 10 9 7 13 13 O 1.21347 * 119.99961 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00010 * 179.97438 * 12 10 9 15 15 C 1.46502 * 119.99922 * 180.02562 * 14 12 10 16 16 C 1.50700 * 109.47091 * 180.02562 * 15 14 12 17 17 C 1.38635 * 119.74573 * 269.72891 * 16 15 14 18 18 C 1.37626 * 120.24426 * 179.76144 * 17 16 15 19 19 C 1.40716 * 119.74459 * 0.52926 * 18 17 16 20 20 C 1.41391 * 120.24195 * 179.74217 * 19 18 17 21 21 H 1.08002 * 120.00334 * 204.36487 * 20 19 18 22 22 C 1.39947 * 120.00192 * 24.37081 * 20 19 18 23 23 N 1.30824 * 119.99990 * 17.85493 * 22 20 19 24 24 Si 1.86800 * 120.00186 * 197.86014 * 22 20 19 25 25 H 1.48502 * 109.47028 * 89.99698 * 24 22 20 26 26 H 1.48500 * 109.47205 * 209.99836 * 24 22 20 27 27 H 1.48503 * 109.46880 * 329.99457 * 24 22 20 28 28 C 1.40712 * 119.50992 * 359.72188 * 19 18 17 29 29 C 1.37613 * 119.74864 * 0.02562 * 28 19 18 30 30 H 1.08999 * 109.47188 * 182.60506 * 1 2 3 31 31 H 1.09001 * 109.47615 * 302.60854 * 1 2 3 32 32 H 1.09007 * 109.47107 * 62.60918 * 1 2 3 33 33 H 1.09002 * 110.37637 * 261.51310 * 4 2 1 34 34 H 1.09002 * 110.37516 * 23.84765 * 4 2 1 35 35 H 1.09000 * 110.37083 * 281.67848 * 6 5 4 36 36 H 1.09008 * 110.37160 * 159.34184 * 6 5 4 37 37 H 0.97003 * 119.99767 * 93.54556 * 9 7 6 38 38 H 0.96993 * 119.99943 * 0.02562 * 14 12 10 39 39 H 1.09001 * 109.46889 * 299.99985 * 15 14 12 40 40 H 1.08997 * 109.47086 * 59.99855 * 15 14 12 41 41 H 1.07993 * 119.87875 * 359.97438 * 17 16 15 42 42 H 1.08006 * 120.12566 * 180.22696 * 18 17 16 43 43 H 0.96999 * 120.00175 * 180.02562 * 23 22 20 44 44 H 1.08007 * 120.12456 * 179.97438 * 28 19 18 45 45 H 1.08001 * 119.87586 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0742 -0.7807 1.2168 5 8 3.2433 -1.4684 0.7212 6 6 2.8786 -1.9394 -0.5945 7 6 2.0713 -0.7798 -1.2190 8 1 2.7199 -0.1440 -1.8217 9 7 0.9681 -1.3008 -2.0299 10 6 1.1762 -1.6268 -3.3210 11 8 2.2773 -1.4885 -3.8119 12 6 0.0508 -2.1588 -4.1481 13 8 -1.0502 -2.2976 -3.6571 14 7 0.2588 -2.4845 -5.4393 15 6 -0.8446 -3.0054 -6.2502 16 6 -0.3518 -3.2893 -7.6458 17 6 -0.4194 -2.2992 -8.6138 18 6 0.0321 -2.5457 -9.8903 19 6 0.5536 -3.8120 -10.2140 20 6 1.0155 -4.0784 -11.5235 21 1 1.0422 -5.0938 -11.8906 22 6 1.4380 -3.0265 -12.3440 23 7 1.7404 -1.8674 -11.8180 24 14 1.5702 -3.2772 -14.1904 25 1 0.2768 -2.9282 -14.8312 26 1 2.6427 -2.4049 -14.7329 27 1 1.8964 -4.6977 -14.4749 28 6 0.6125 -4.8109 -9.2246 29 6 0.1600 -4.5404 -7.9535 30 1 -0.3633 -1.0266 0.0467 31 1 -0.3634 0.5538 0.8657 32 1 -0.3634 0.4728 -0.9125 33 1 2.3490 -0.0932 2.0168 34 1 1.3332 -1.4980 1.5698 35 1 2.2610 -2.8344 -0.5194 36 1 3.7715 -2.1420 -1.1860 37 1 0.0878 -1.4111 -1.6376 38 1 1.1389 -2.3739 -5.8317 39 1 -1.2205 -3.9260 -5.8037 40 1 -1.6458 -2.2676 -6.2904 41 1 -0.8248 -1.3298 -8.3644 42 1 -0.0181 -1.7718 -10.6420 43 1 2.0330 -1.1382 -12.3868 44 1 1.0105 -5.7864 -9.4623 45 1 0.2038 -5.3057 -7.1927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930905056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:04 Heat of formation + Delta-G solvation = -116.889600 kcal Electronic energy + Delta-G solvation = -27317.014621 eV Core-core repulsion = 23298.229563 eV Total energy + Delta-G solvation = -4018.785058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.98861 -40.74199 -39.66911 -39.18531 -36.70571 -36.10001 -35.10767 -33.40479 -32.16020 -31.19162 -30.23766 -28.87613 -27.29306 -26.38911 -24.82702 -23.61162 -22.91967 -21.89163 -21.65619 -20.99412 -19.83470 -19.25366 -18.12788 -17.43205 -17.22042 -17.12150 -17.08345 -16.54839 -16.33861 -15.98595 -15.86164 -15.61433 -15.41917 -14.95566 -14.78962 -14.59737 -14.23185 -13.84172 -13.72547 -13.60718 -13.45829 -13.34598 -13.21843 -12.89303 -12.82674 -12.73537 -12.49428 -12.14957 -12.11527 -12.03425 -11.76922 -11.53132 -11.30464 -11.08576 -10.92971 -10.79390 -10.39661 -10.22719 -9.41369 -9.30492 -8.68437 -6.38698 0.28192 0.76009 1.12686 1.29886 1.38364 1.51070 1.54334 2.07906 2.18885 2.51757 2.77545 3.03149 3.29154 3.43585 3.67321 3.73060 3.79173 4.04370 4.11138 4.15448 4.28763 4.39329 4.49688 4.58928 4.63274 4.63729 4.68597 4.72219 4.79879 4.91340 5.02598 5.03386 5.12922 5.14004 5.18027 5.24493 5.34064 5.41769 5.67023 5.70139 5.83080 5.93392 6.07329 6.17167 6.32639 6.34866 6.65427 6.67126 6.88850 6.90187 6.99067 8.27909 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024599 B = 0.001984 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.990403 B =14112.549127 C =14477.981014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 H 0.108 0.892 4 C 0.043 3.957 5 O -0.389 6.389 6 C 0.036 3.964 7 C 0.109 3.891 8 H 0.097 0.903 9 N -0.680 5.680 10 C 0.510 3.490 11 O -0.540 6.540 12 C 0.503 3.497 13 O -0.545 6.545 14 N -0.684 5.684 15 C 0.190 3.810 16 C -0.233 4.233 17 C -0.081 4.081 18 C -0.194 4.194 19 C 0.086 3.914 20 C -0.495 4.495 21 H 0.077 0.923 22 C 0.035 3.965 23 N -0.819 5.819 24 Si 0.983 3.017 25 H -0.262 1.262 26 H -0.268 1.268 27 H -0.258 1.258 28 C -0.245 4.245 29 C -0.067 4.067 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.422 0.578 38 H 0.412 0.588 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.289 0.711 44 H 0.098 0.902 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.147 4.757 21.458 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 H 0.126 0.874 4 C -0.033 4.033 5 O -0.307 6.307 6 C -0.042 4.042 7 C 0.004 3.996 8 H 0.115 0.885 9 N -0.338 5.338 10 C 0.291 3.709 11 O -0.417 6.417 12 C 0.284 3.716 13 O -0.424 6.424 14 N -0.335 5.335 15 C 0.069 3.931 16 C -0.235 4.235 17 C -0.100 4.100 18 C -0.214 4.214 19 C 0.083 3.917 20 C -0.524 4.524 21 H 0.095 0.905 22 C -0.181 4.181 23 N -0.444 5.444 24 Si 0.803 3.197 25 H -0.186 1.186 26 H -0.193 1.193 27 H -0.182 1.182 28 C -0.265 4.265 29 C -0.085 4.085 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.264 0.736 38 H 0.249 0.751 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.100 0.900 44 H 0.116 0.884 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.860 4.956 21.528 22.169 hybrid contribution 0.179 -0.043 -1.335 1.348 sum -1.682 4.913 20.193 20.850 Atomic orbital electron populations 1.21827 0.92541 1.02890 1.03834 1.22790 0.98102 1.00960 0.92489 0.87371 1.23783 0.87515 0.95574 0.96457 1.89162 1.36509 1.74404 1.30666 1.23820 1.00118 0.96306 0.83960 1.22545 0.88257 0.95797 0.92985 0.88523 1.45958 1.15316 1.63272 1.09232 1.20228 0.88152 0.78848 0.83702 1.90790 1.25559 1.52836 1.72474 1.20177 0.88441 0.79643 0.83382 1.90721 1.25179 1.54334 1.72158 1.46332 1.15599 1.61837 1.09733 1.20020 0.87479 0.98933 0.86692 1.19189 1.14293 0.95349 0.94681 1.20791 0.98416 0.97558 0.93234 1.21283 1.04828 0.98588 0.96657 1.18031 0.88321 0.92194 0.93143 1.19909 1.39003 0.95085 0.98378 0.90487 1.26788 0.91634 0.93901 1.05792 1.69868 1.30919 1.04026 1.39583 0.85191 0.79019 0.79639 0.75820 1.18643 1.19288 1.18188 1.21173 1.11206 0.99921 0.94159 1.20720 0.96396 0.95869 0.95536 0.91694 0.89341 0.91968 0.86734 0.90726 0.91355 0.88954 0.73564 0.75130 0.90434 0.90909 0.87490 0.88091 0.89990 0.88357 0.86355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 7.80 71.98 0.56 -0.71 16 2 C -0.12 -1.31 3.71 -9.78 -0.04 -1.35 16 3 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 4 C 0.04 0.46 7.19 72.48 0.52 0.99 16 5 O -0.39 -7.12 11.65 -148.98 -1.74 -8.86 16 6 C 0.04 0.65 7.35 72.48 0.53 1.18 16 7 C 0.11 1.83 3.39 46.00 0.16 1.99 16 8 H 0.10 1.89 7.67 -2.39 -0.02 1.87 16 9 N -0.68 -12.97 4.64 -439.07 -2.04 -15.00 16 10 C 0.51 13.34 7.89 87.27 0.69 14.03 16 11 O -0.54 -16.97 16.19 -3.24 -0.05 -17.02 16 12 C 0.50 14.49 7.89 87.27 0.69 15.18 16 13 O -0.55 -16.72 16.48 -3.24 -0.05 -16.77 16 14 N -0.68 -21.01 5.54 -468.14 -2.59 -23.60 16 15 C 0.19 6.09 5.79 85.63 0.50 6.59 16 16 C -0.23 -9.14 5.27 -19.67 -0.10 -9.24 16 17 C -0.08 -3.55 9.67 22.22 0.21 -3.33 16 18 C -0.19 -9.89 8.70 22.73 0.20 -9.70 16 19 C 0.09 4.51 5.58 -21.29 -0.12 4.39 16 20 C -0.49 -26.17 9.05 23.46 0.21 -25.96 16 21 H 0.08 3.93 7.91 -2.91 -0.02 3.91 16 22 C 0.03 1.71 5.14 85.26 0.44 2.15 16 23 N -0.82 -42.09 10.95 21.83 0.24 -41.85 16 24 Si 0.98 37.50 29.60 68.60 2.03 39.53 16 25 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 26 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 27 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 28 C -0.25 -11.59 9.80 22.73 0.22 -11.37 16 29 C -0.07 -2.72 9.67 22.22 0.21 -2.51 16 30 H 0.06 0.52 6.99 -2.39 -0.02 0.50 16 31 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.64 7.74 -2.38 -0.02 0.62 16 33 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.66 7.84 -2.39 -0.02 0.64 16 35 H 0.07 1.19 8.06 -2.39 -0.02 1.17 16 36 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.42 6.86 5.31 -92.71 -0.49 6.37 16 38 H 0.41 13.30 7.94 -92.71 -0.74 12.56 16 39 H 0.08 2.34 8.08 -2.39 -0.02 2.32 16 40 H 0.07 2.27 8.08 -2.39 -0.02 2.25 16 41 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 42 H 0.10 5.43 6.16 -2.91 -0.02 5.41 16 43 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 44 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 45 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -61.75 377.04 0.49 -61.27 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -0.19 Total: 39.97 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 4.89 Total: -17.66 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -4.39 Total: -80.45 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.84 Total: -42.66 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -61.75 0.49 -61.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930905056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.622 kcal (2) G-P(sol) polarization free energy of solvation -61.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds