Wall clock time and date at job start Tue Mar 31 2020 18:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46631 * 2 1 4 4 C 1.50697 * 109.46984 * 119.99953 * 2 1 3 5 5 O 1.21280 * 120.00285 * 21.26188 * 4 2 1 6 6 N 1.34776 * 119.99991 * 201.25637 * 4 2 1 7 7 C 1.46969 * 120.59397 * 4.47568 * 6 4 2 8 8 C 1.53810 * 108.39891 * 124.75464 * 7 6 4 9 9 N 1.46971 * 108.57833 * 49.64142 * 8 7 6 10 10 C 1.34772 * 120.59690 * 124.61830 * 9 8 7 11 11 O 1.21687 * 119.99972 * 174.91494 * 10 9 8 12 12 C 1.46374 * 119.99961 * 354.92280 * 10 9 8 13 13 H 1.08007 * 119.99920 * 7.03172 * 12 10 9 14 14 C 1.40048 * 120.00134 * 187.03075 * 12 10 9 15 15 N 1.30671 * 119.99818 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 120.00208 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46848 * 60.00138 * 16 14 12 18 18 H 1.48497 * 109.47120 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46896 * 300.00258 * 16 14 12 20 20 C 1.46968 * 118.80873 * 304.64427 * 9 8 7 21 21 C 1.46959 * 120.59452 * 184.75244 * 6 4 2 22 22 C 1.50699 * 109.47089 * 240.00287 * 2 1 3 23 23 C 1.38286 * 119.97093 * 299.99876 * 22 2 1 24 24 C 1.38244 * 120.11423 * 179.97438 * 23 22 2 25 25 C 1.38167 * 120.05023 * 359.97324 * 24 23 22 26 26 C 1.38708 * 119.94694 * 0.02562 * 25 24 23 27 27 O 1.35901 * 120.05661 * 180.02562 * 26 25 24 28 28 C 1.38124 * 119.97210 * 119.97544 * 22 2 1 29 29 H 1.08995 * 109.47184 * 175.34725 * 1 2 3 30 30 H 1.09001 * 109.47046 * 295.34483 * 1 2 3 31 31 H 1.08999 * 109.47441 * 55.34390 * 1 2 3 32 32 H 1.08994 * 109.60781 * 244.54329 * 7 6 4 33 33 H 1.09001 * 109.60481 * 5.05145 * 7 6 4 34 34 H 1.08993 * 109.74574 * 289.84972 * 8 7 6 35 35 H 1.09000 * 109.53345 * 169.29890 * 8 7 6 36 36 H 0.97005 * 120.00116 * 179.97438 * 15 14 12 37 37 H 1.08995 * 109.60828 * 295.48042 * 20 9 8 38 38 H 1.08999 * 109.74716 * 175.05168 * 20 9 8 39 39 H 1.08997 * 109.61277 * 354.95132 * 21 6 4 40 40 H 1.09004 * 109.61219 * 115.46023 * 21 6 4 41 41 H 1.08000 * 119.94308 * 0.25809 * 23 22 2 42 42 H 1.07998 * 119.97295 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.02316 * 180.02562 * 25 24 23 44 44 H 0.96693 * 114.00243 * 89.99764 * 27 26 25 45 45 H 1.07998 * 120.02608 * 359.97438 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.3116 -1.4892 1.8177 6 7 3.2825 -0.4803 1.6783 7 6 4.1326 0.5319 1.0359 8 6 4.6028 1.5250 2.1123 9 7 5.1426 0.7639 3.2478 10 6 6.3931 0.9933 3.6950 11 8 6.7967 0.4242 4.6920 12 6 7.2657 1.9270 2.9815 13 1 6.8736 2.5169 2.1661 14 6 8.6090 2.0555 3.3560 15 7 9.0833 1.3422 4.3427 16 14 9.7229 3.2467 2.4449 17 1 9.1823 4.6241 2.5699 18 1 11.0866 3.1957 3.0304 19 1 9.7850 2.8676 1.0104 20 6 4.2944 -0.2523 3.8866 21 6 3.8222 -1.2413 2.8137 22 6 2.0323 -0.7103 -1.2305 23 6 1.6979 -2.0343 -1.4488 24 6 2.1566 -2.6886 -2.5768 25 6 2.9503 -2.0207 -3.4895 26 6 3.2872 -0.6926 -3.2728 27 8 4.0672 -0.0333 -4.1693 28 6 2.8260 -0.0383 -2.1395 29 1 -0.3633 -1.0242 -0.0834 30 1 -0.3633 0.4399 0.9288 31 1 -0.3634 0.5844 -0.8453 32 1 4.9957 0.0481 0.5787 33 1 3.5599 1.0603 0.2737 34 1 3.7613 2.1322 2.4458 35 1 5.3805 2.1679 1.7002 36 1 10.0139 1.4309 4.6019 37 1 3.4310 0.2284 4.3464 38 1 4.8659 -0.7835 4.6477 39 1 3.0446 -1.8844 3.2259 40 1 4.6637 -1.8486 2.4803 41 1 1.0735 -2.5566 -0.7391 42 1 1.8944 -3.7227 -2.7448 43 1 3.3081 -2.5322 -4.3708 44 1 3.5711 0.4124 -4.8694 45 1 3.0862 0.9959 -1.9690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934788032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:14 Heat of formation + Delta-G solvation = -76.342252 kcal Electronic energy + Delta-G solvation = -29051.685305 eV Core-core repulsion = 25034.658512 eV Total energy + Delta-G solvation = -4017.026793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.69639 -39.54128 -38.06840 -37.02049 -35.86390 -34.09946 -32.98329 -32.49214 -30.97835 -30.48351 -29.22674 -27.46560 -26.24895 -24.71770 -23.24989 -22.83429 -22.51641 -21.35449 -19.73745 -18.69922 -18.01436 -17.30756 -16.73955 -16.21404 -16.01897 -15.85343 -15.50602 -15.31491 -14.98187 -14.54124 -14.26756 -14.16776 -13.97724 -13.83694 -13.65756 -13.12307 -12.71175 -12.57760 -12.42775 -12.31000 -12.17223 -11.88792 -11.70102 -11.62499 -11.51016 -11.27645 -11.16973 -11.00454 -10.97367 -10.74568 -10.62165 -10.29247 -10.10373 -9.75327 -9.04705 -8.92583 -8.77619 -8.64171 -7.66953 -7.27220 -6.26500 -4.72160 0.99108 1.07095 2.68091 3.08309 3.11488 3.17145 3.18308 3.38186 3.95004 4.02923 4.40473 4.44073 4.49396 4.54194 4.62684 4.85824 4.91865 5.00799 5.08976 5.28331 5.29575 5.33322 5.49991 5.53726 5.56972 5.62243 5.66808 5.69303 5.75872 5.92197 5.95720 6.00351 6.06820 6.16700 6.19862 6.25784 6.31568 6.34897 6.51103 6.55696 6.72486 7.38059 7.41491 7.47581 7.55999 8.02889 8.23759 8.26720 8.95141 9.32902 10.49675 10.68022 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.003609 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.180289 B = 7755.875633 C = 9268.197551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.074 4.074 3 H 0.102 0.898 4 C 0.522 3.478 5 O -0.547 6.547 6 N -0.599 5.599 7 C 0.089 3.911 8 C 0.108 3.892 9 N -0.642 5.642 10 C 0.560 3.440 11 O -0.575 6.575 12 C -0.545 4.545 13 H 0.073 0.927 14 C 0.089 3.911 15 N -0.767 5.767 16 Si 0.906 3.094 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.267 1.267 20 C 0.109 3.891 21 C 0.099 3.901 22 C -0.057 4.057 23 C -0.115 4.115 24 C -0.101 4.101 25 C -0.146 4.146 26 C 0.107 3.893 27 O -0.497 6.497 28 C -0.136 4.136 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.107 0.893 36 H 0.270 0.730 37 H 0.046 0.954 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.389 0.611 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.986 -1.703 -17.011 22.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.095 4.095 3 H 0.120 0.880 4 C 0.310 3.690 5 O -0.425 6.425 6 N -0.332 5.332 7 C -0.035 4.035 8 C -0.017 4.017 9 N -0.381 5.381 10 C 0.366 3.634 11 O -0.457 6.457 12 C -0.582 4.582 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.395 5.395 16 Si 0.731 3.269 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.192 1.192 20 C -0.016 4.016 21 C -0.024 4.024 22 C -0.057 4.057 23 C -0.133 4.133 24 C -0.119 4.119 25 C -0.165 4.165 26 C 0.062 3.938 27 O -0.307 6.307 28 C -0.154 4.154 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.244 0.756 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.476 -2.690 -15.633 21.476 hybrid contribution 0.332 0.838 -0.919 1.288 sum -14.145 -1.852 -16.553 21.851 Atomic orbital electron populations 1.21636 0.91446 1.03241 1.02209 1.20369 0.98326 1.00065 0.90767 0.87964 1.20336 0.81264 0.82378 0.85065 1.90654 1.55634 1.37386 1.58824 1.48071 1.13508 1.38611 1.32962 1.22472 0.94701 0.90406 0.95907 1.21897 0.99040 0.93347 0.87430 1.48178 1.15614 1.40032 1.34247 1.18280 0.78334 0.82635 0.84168 1.90599 1.73117 1.54510 1.27522 1.20898 0.94402 1.24532 1.18354 0.90930 1.25717 0.98392 0.95024 0.94022 1.69991 1.14561 1.32999 1.21994 0.86452 0.79122 0.81114 0.80237 1.19196 1.20510 1.19175 1.21487 0.94372 0.90797 0.94961 1.22101 0.98797 0.94522 0.87016 1.19314 0.97457 0.94265 0.94681 1.21137 1.00341 0.94114 0.97718 1.21020 0.97150 0.99893 0.93880 1.21449 0.99345 0.94745 1.00937 1.18395 0.93186 0.91131 0.91057 1.84870 1.34529 1.70300 1.40982 1.21336 0.98215 1.00795 0.95066 0.91404 0.91699 0.91890 0.90599 0.89908 0.93490 0.87553 0.91923 0.93569 0.88638 0.88953 0.91313 0.85333 0.85498 0.85481 0.75560 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.48 37.16 0.32 -0.93 16 2 C -0.07 -0.82 2.10 -92.92 -0.19 -1.01 16 3 H 0.10 0.97 6.02 -51.93 -0.31 0.65 16 4 C 0.52 7.70 6.46 -10.99 -0.07 7.63 16 5 O -0.55 -9.49 15.55 5.56 0.09 -9.41 16 6 N -0.60 -9.34 2.94 -172.22 -0.51 -9.85 16 7 C 0.09 1.30 6.43 -3.36 -0.02 1.27 16 8 C 0.11 1.88 6.52 -3.36 -0.02 1.85 16 9 N -0.64 -14.14 2.95 -173.87 -0.51 -14.65 16 10 C 0.56 15.47 7.61 -12.99 -0.10 15.37 16 11 O -0.58 -18.25 14.49 5.20 0.08 -18.18 16 12 C -0.55 -14.69 8.87 -35.63 -0.32 -15.00 16 13 H 0.07 1.74 5.64 -52.48 -0.30 1.45 16 14 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 15 N -0.77 -22.50 11.85 55.55 0.66 -21.85 16 16 Si 0.91 19.47 29.56 -169.99 -5.02 14.45 16 17 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 C 0.11 2.14 6.58 -3.59 -0.02 2.12 16 21 C 0.10 1.69 6.60 -3.60 -0.02 1.67 16 22 C -0.06 -0.61 4.64 -104.65 -0.49 -1.10 16 23 C -0.12 -1.26 8.76 -39.56 -0.35 -1.60 16 24 C -0.10 -0.98 10.04 -39.61 -0.40 -1.37 16 25 C -0.15 -1.40 9.99 -39.43 -0.39 -1.80 16 26 C 0.11 1.09 6.70 -39.22 -0.26 0.82 16 27 O -0.50 -4.59 13.50 -19.43 -0.26 -4.86 16 28 C -0.14 -1.38 9.13 -39.43 -0.36 -1.74 16 29 H 0.07 0.70 7.13 -51.93 -0.37 0.33 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 0.93 4.61 -51.93 -0.24 0.69 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.11 1.88 5.29 -51.93 -0.27 1.61 16 36 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.10 2.07 7.03 -51.93 -0.36 1.71 16 39 H 0.09 1.53 6.99 -51.93 -0.36 1.17 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.13 1.45 7.54 -52.49 -0.40 1.05 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 44 H 0.39 1.57 9.06 45.56 0.41 1.99 16 45 H 0.13 1.14 7.64 -52.49 -0.40 0.74 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -36.29 366.78 -7.88 -44.17 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.12 Total: 6.16 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -2.80 Total: 8.48 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.36 Total: -46.35 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.10 Total: -32.44 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.29 -7.88 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934788032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.177 kcal (2) G-P(sol) polarization free energy of solvation -36.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds