Wall clock time and date at job start Tue Mar 31 2020 18:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46631 * 2 1 4 4 C 1.50697 * 109.46984 * 119.99953 * 2 1 3 5 5 O 1.21280 * 120.00285 * 21.26188 * 4 2 1 6 6 N 1.34776 * 119.99991 * 201.25637 * 4 2 1 7 7 C 1.46969 * 120.59397 * 4.47568 * 6 4 2 8 8 C 1.53810 * 108.39891 * 124.75464 * 7 6 4 9 9 N 1.46971 * 108.57833 * 49.64142 * 8 7 6 10 10 C 1.34772 * 120.59690 * 124.61830 * 9 8 7 11 11 O 1.21687 * 119.99972 * 174.91494 * 10 9 8 12 12 C 1.46374 * 119.99961 * 354.92280 * 10 9 8 13 13 H 1.08007 * 119.99920 * 7.03172 * 12 10 9 14 14 C 1.40048 * 120.00134 * 187.03075 * 12 10 9 15 15 N 1.30671 * 119.99818 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 120.00208 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46848 * 60.00138 * 16 14 12 18 18 H 1.48497 * 109.47120 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46896 * 300.00258 * 16 14 12 20 20 C 1.46968 * 118.80873 * 304.64427 * 9 8 7 21 21 C 1.46959 * 120.59452 * 184.75244 * 6 4 2 22 22 C 1.50699 * 109.47089 * 240.00287 * 2 1 3 23 23 C 1.38286 * 119.97093 * 299.99876 * 22 2 1 24 24 C 1.38244 * 120.11423 * 179.97438 * 23 22 2 25 25 C 1.38167 * 120.05023 * 359.97324 * 24 23 22 26 26 C 1.38708 * 119.94694 * 0.02562 * 25 24 23 27 27 O 1.35901 * 120.05661 * 180.02562 * 26 25 24 28 28 C 1.38124 * 119.97210 * 119.97544 * 22 2 1 29 29 H 1.08995 * 109.47184 * 175.34725 * 1 2 3 30 30 H 1.09001 * 109.47046 * 295.34483 * 1 2 3 31 31 H 1.08999 * 109.47441 * 55.34390 * 1 2 3 32 32 H 1.08994 * 109.60781 * 244.54329 * 7 6 4 33 33 H 1.09001 * 109.60481 * 5.05145 * 7 6 4 34 34 H 1.08993 * 109.74574 * 289.84972 * 8 7 6 35 35 H 1.09000 * 109.53345 * 169.29890 * 8 7 6 36 36 H 0.97005 * 120.00116 * 179.97438 * 15 14 12 37 37 H 1.08995 * 109.60828 * 295.48042 * 20 9 8 38 38 H 1.08999 * 109.74716 * 175.05168 * 20 9 8 39 39 H 1.08997 * 109.61277 * 354.95132 * 21 6 4 40 40 H 1.09004 * 109.61219 * 115.46023 * 21 6 4 41 41 H 1.08000 * 119.94308 * 0.25809 * 23 22 2 42 42 H 1.07998 * 119.97295 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.02316 * 180.02562 * 25 24 23 44 44 H 0.96693 * 114.00243 * 89.99764 * 27 26 25 45 45 H 1.07998 * 120.02608 * 359.97438 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.3116 -1.4892 1.8177 6 7 3.2825 -0.4803 1.6783 7 6 4.1326 0.5319 1.0359 8 6 4.6028 1.5250 2.1123 9 7 5.1426 0.7639 3.2478 10 6 6.3931 0.9933 3.6950 11 8 6.7967 0.4242 4.6920 12 6 7.2657 1.9270 2.9815 13 1 6.8736 2.5169 2.1661 14 6 8.6090 2.0555 3.3560 15 7 9.0833 1.3422 4.3427 16 14 9.7229 3.2467 2.4449 17 1 9.1823 4.6241 2.5699 18 1 11.0866 3.1957 3.0304 19 1 9.7850 2.8676 1.0104 20 6 4.2944 -0.2523 3.8866 21 6 3.8222 -1.2413 2.8137 22 6 2.0323 -0.7103 -1.2305 23 6 1.6979 -2.0343 -1.4488 24 6 2.1566 -2.6886 -2.5768 25 6 2.9503 -2.0207 -3.4895 26 6 3.2872 -0.6926 -3.2728 27 8 4.0672 -0.0333 -4.1693 28 6 2.8260 -0.0383 -2.1395 29 1 -0.3633 -1.0242 -0.0834 30 1 -0.3633 0.4399 0.9288 31 1 -0.3634 0.5844 -0.8453 32 1 4.9957 0.0481 0.5787 33 1 3.5599 1.0603 0.2737 34 1 3.7613 2.1322 2.4458 35 1 5.3805 2.1679 1.7002 36 1 10.0139 1.4309 4.6019 37 1 3.4310 0.2284 4.3464 38 1 4.8659 -0.7835 4.6477 39 1 3.0446 -1.8844 3.2259 40 1 4.6637 -1.8486 2.4803 41 1 1.0735 -2.5566 -0.7391 42 1 1.8944 -3.7227 -2.7448 43 1 3.3081 -2.5322 -4.3708 44 1 3.5711 0.4124 -4.8694 45 1 3.0862 0.9959 -1.9690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934788032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:13 Heat of formation + Delta-G solvation = -102.343713 kcal Electronic energy + Delta-G solvation = -29052.812813 eV Core-core repulsion = 25034.658512 eV Total energy + Delta-G solvation = -4018.154301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.75576 -40.51509 -39.68170 -37.85723 -37.50787 -35.08363 -34.69825 -34.38283 -32.42198 -31.22051 -29.97882 -29.14518 -27.97690 -25.82926 -24.56690 -23.82558 -23.53434 -22.60151 -21.21333 -19.94312 -19.15421 -18.46555 -17.98409 -17.51388 -17.42686 -17.03127 -16.77521 -16.24785 -16.22794 -15.97309 -15.93261 -15.61590 -15.04901 -15.00075 -14.50515 -14.46709 -14.17321 -13.80854 -13.51627 -13.43369 -13.19016 -13.10856 -13.05387 -12.89858 -12.85732 -12.68688 -12.48725 -12.37004 -12.30861 -12.12165 -12.01262 -11.91145 -11.35800 -10.90555 -10.89059 -10.09915 -9.81507 -9.79124 -9.54147 -9.01992 -8.28662 -6.83319 0.23697 0.34476 1.42682 1.45578 1.53340 1.57121 1.85850 2.25337 2.46829 2.64515 2.79551 3.26818 3.46830 3.58648 3.68886 3.80923 3.92094 3.93915 4.12022 4.13817 4.21344 4.26373 4.31236 4.33941 4.45650 4.53773 4.58244 4.65727 4.73435 4.83261 4.84710 4.92132 4.97143 5.03781 5.04658 5.25604 5.33796 5.41426 5.44601 5.46158 5.56218 5.70807 5.87292 6.11526 6.28788 6.39538 6.88821 6.92041 7.06451 7.38957 8.45219 8.67268 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.003609 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.180289 B = 7755.875633 C = 9268.197551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.066 4.066 3 H 0.126 0.874 4 C 0.521 3.479 5 O -0.575 6.575 6 N -0.604 5.604 7 C 0.099 3.901 8 C 0.103 3.897 9 N -0.645 5.645 10 C 0.541 3.459 11 O -0.632 6.632 12 C -0.566 4.566 13 H 0.101 0.899 14 C 0.029 3.971 15 N -0.825 5.825 16 Si 0.994 3.006 17 H -0.252 1.252 18 H -0.280 1.280 19 H -0.251 1.251 20 C 0.112 3.888 21 C 0.111 3.889 22 C -0.063 4.063 23 C -0.132 4.132 24 C -0.104 4.104 25 C -0.152 4.152 26 C 0.103 3.897 27 O -0.509 6.509 28 C -0.139 4.139 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.126 0.874 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.273 0.727 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.118 0.882 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.411 0.589 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.723 0.298 -20.428 25.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.087 4.087 3 H 0.144 0.856 4 C 0.311 3.689 5 O -0.455 6.455 6 N -0.336 5.336 7 C -0.024 4.024 8 C -0.021 4.021 9 N -0.381 5.381 10 C 0.348 3.652 11 O -0.520 6.520 12 C -0.602 4.602 13 H 0.119 0.881 14 C -0.186 4.186 15 N -0.454 5.454 16 Si 0.813 3.187 17 H -0.176 1.176 18 H -0.205 1.205 19 H -0.174 1.174 20 C -0.013 4.013 21 C -0.013 4.013 22 C -0.064 4.064 23 C -0.150 4.150 24 C -0.122 4.122 25 C -0.170 4.170 26 C 0.058 3.942 27 O -0.322 6.322 28 C -0.158 4.158 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.136 0.864 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.270 0.730 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.293 -0.670 -19.120 24.493 hybrid contribution 0.462 0.158 0.110 0.501 sum -14.831 -0.512 -19.010 24.116 Atomic orbital electron populations 1.21640 0.90540 1.03027 1.03053 1.20398 0.99038 1.00553 0.88670 0.85607 1.21063 0.80320 0.81880 0.85683 1.90643 1.56263 1.38673 1.59947 1.48134 1.14135 1.38776 1.32507 1.22445 0.94869 0.89578 0.95479 1.22156 0.99511 0.93844 0.86566 1.48031 1.14464 1.40407 1.35244 1.18737 0.80098 0.82600 0.83782 1.90550 1.75028 1.56491 1.29898 1.21462 0.94954 1.24738 1.19006 0.88120 1.26995 1.00236 0.96757 0.94576 1.70187 1.15255 1.35502 1.24469 0.85120 0.76130 0.78423 0.78994 1.17571 1.20503 1.17429 1.21477 0.93752 0.90795 0.95249 1.21784 0.98527 0.93842 0.87118 1.19289 0.98093 0.94249 0.94777 1.21192 1.00970 0.94606 0.98218 1.21233 0.96829 1.00740 0.93407 1.21683 0.99105 0.94869 1.01388 1.18535 0.92857 0.91423 0.91358 1.84812 1.35268 1.70498 1.41645 1.21495 0.97851 1.01610 0.94821 0.92549 0.92210 0.89299 0.91723 0.85657 0.91372 0.87654 0.91692 0.92500 0.91652 0.88482 0.92468 0.86424 0.83882 0.84014 0.72994 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.48 71.98 0.61 -1.53 16 2 C -0.07 -1.26 2.10 -12.29 -0.03 -1.29 16 3 H 0.13 1.80 6.02 -2.39 -0.01 1.78 16 4 C 0.52 14.52 6.46 87.66 0.57 15.08 16 5 O -0.58 -19.62 15.55 -3.03 -0.05 -19.67 16 6 N -0.60 -17.98 2.94 -817.17 -2.40 -20.39 16 7 C 0.10 2.65 6.43 86.56 0.56 3.20 16 8 C 0.10 3.37 6.52 86.56 0.56 3.93 16 9 N -0.64 -28.67 2.95 -822.24 -2.42 -31.09 16 10 C 0.54 30.81 7.61 86.36 0.66 31.47 16 11 O -0.63 -42.29 14.49 -4.31 -0.06 -42.36 16 12 C -0.57 -30.50 8.87 24.83 0.22 -30.28 16 13 H 0.10 4.67 5.64 -2.91 -0.02 4.65 16 14 C 0.03 1.59 5.50 85.30 0.47 2.06 16 15 N -0.82 -49.94 11.85 21.84 0.26 -49.68 16 16 Si 0.99 39.36 29.56 68.60 2.03 41.39 16 17 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 18 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 19 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 20 C 0.11 4.54 6.58 86.41 0.57 5.11 16 21 C 0.11 3.87 6.60 86.42 0.57 4.44 16 22 C -0.06 -1.21 4.64 -19.88 -0.09 -1.30 16 23 C -0.13 -2.68 8.76 22.28 0.20 -2.49 16 24 C -0.10 -1.82 10.04 22.25 0.22 -1.60 16 25 C -0.15 -2.56 9.99 22.37 0.22 -2.33 16 26 C 0.10 1.79 6.70 22.50 0.15 1.94 16 27 O -0.51 -7.81 13.50 -92.43 -1.25 -9.06 16 28 C -0.14 -2.36 9.13 22.37 0.20 -2.16 16 29 H 0.06 1.10 7.13 -2.39 -0.02 1.08 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.13 2.27 4.61 -2.39 -0.01 2.26 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.11 3.48 5.29 -2.39 -0.01 3.46 16 36 H 0.27 15.10 8.29 -92.70 -0.77 14.33 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.07 3.04 7.03 -2.39 -0.02 3.02 16 39 H 0.10 3.28 6.99 -2.39 -0.02 3.26 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.12 2.61 7.54 -2.91 -0.02 2.58 16 42 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 43 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 44 H 0.41 1.98 9.06 -74.06 -0.67 1.31 16 45 H 0.15 1.92 7.64 -2.91 -0.02 1.89 16 Total: -1.00 -82.46 366.78 2.13 -80.33 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.37 Total: 26.27 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: 5.66 Total: 24.25 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -4.57 Total: -101.16 kcal Atomic # 8 Polarization: -69.72 SS G_CDS: -1.36 Total: -71.08 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -82.46 2.13 -80.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934788032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.014 kcal (2) G-P(sol) polarization free energy of solvation -82.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds