Wall clock time and date at job start Tue Mar 31 2020 18:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46432 * 2 1 4 4 C 1.50695 * 109.47203 * 239.99756 * 2 1 3 5 5 O 1.21276 * 120.00431 * 334.40020 * 4 2 1 6 6 N 1.34782 * 119.99487 * 154.39914 * 4 2 1 7 7 C 1.46959 * 120.59695 * 4.93587 * 6 4 2 8 8 C 1.53810 * 108.39646 * 124.75871 * 7 6 4 9 9 N 1.46962 * 108.58046 * 49.64284 * 8 7 6 10 10 C 1.34773 * 120.59849 * 124.62522 * 9 8 7 11 11 O 1.21689 * 120.00092 * 174.72765 * 10 9 8 12 12 C 1.46371 * 119.99820 * 354.72722 * 10 9 8 13 13 H 1.07997 * 120.00141 * 5.37865 * 12 10 9 14 14 C 1.40048 * 119.99922 * 185.37846 * 12 10 9 15 15 N 1.30673 * 119.99924 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00158 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47156 * 90.00110 * 16 14 12 18 18 H 1.48499 * 109.47398 * 209.99838 * 16 14 12 19 19 H 1.48503 * 109.46946 * 330.00313 * 16 14 12 20 20 C 1.46968 * 118.80825 * 304.64322 * 9 8 7 21 21 C 1.46968 * 120.58975 * 185.22040 * 6 4 2 22 22 C 1.50696 * 109.46903 * 119.99436 * 2 1 3 23 23 C 1.38290 * 119.96997 * 59.73206 * 22 2 1 24 24 C 1.38245 * 120.10931 * 179.72357 * 23 22 2 25 25 C 1.38164 * 120.06090 * 0.54867 * 24 23 22 26 26 C 1.38716 * 119.93749 * 359.72456 * 25 24 23 27 27 O 1.35904 * 120.05135 * 179.97438 * 26 25 24 28 28 C 1.38120 * 119.97747 * 240.00427 * 22 2 1 29 29 H 1.08997 * 109.47901 * 295.07351 * 1 2 3 30 30 H 1.09001 * 109.47245 * 55.07637 * 1 2 3 31 31 H 1.09001 * 109.46914 * 175.07384 * 1 2 3 32 32 H 1.09003 * 109.61037 * 244.53967 * 7 6 4 33 33 H 1.09003 * 109.60913 * 5.05237 * 7 6 4 34 34 H 1.08998 * 109.74427 * 289.84487 * 8 7 6 35 35 H 1.09004 * 109.53092 * 169.30584 * 8 7 6 36 36 H 0.97009 * 119.99861 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.60730 * 295.48563 * 20 9 8 38 38 H 1.09000 * 109.75359 * 175.05610 * 20 9 8 39 39 H 1.08998 * 109.60927 * 354.94242 * 21 6 4 40 40 H 1.08994 * 109.61031 * 115.45650 * 21 6 4 41 41 H 1.07998 * 119.94540 * 359.97430 * 23 22 2 42 42 H 1.08007 * 119.97335 * 180.25453 * 24 23 22 43 43 H 1.07993 * 120.03403 * 179.70593 * 25 24 23 44 44 H 0.96695 * 113.99763 * 270.02110 * 27 26 25 45 45 H 1.08004 * 120.02825 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 1.3415 -1.5472 -1.7720 6 7 3.2494 -0.4158 -1.7288 7 6 4.1411 0.5156 -1.0238 8 6 5.4826 -0.1934 -0.7720 9 7 5.9394 -0.7930 -2.0335 10 6 7.1561 -0.4978 -2.5325 11 8 7.5622 -1.0721 -3.5255 12 6 7.9889 0.5137 -1.8799 13 1 7.6672 0.9607 -0.9510 14 6 9.2030 0.9017 -2.4603 15 7 9.5925 0.3604 -3.5840 16 14 10.2655 2.1931 -1.6279 17 1 11.2099 1.5297 -0.6933 18 1 11.0313 2.9420 -2.6564 19 1 9.4002 3.1340 -0.8722 20 6 5.0455 -1.7201 -2.7416 21 6 3.7061 -1.0155 -2.9905 22 6 2.0323 -0.7103 1.2305 23 6 1.6932 -2.0326 1.4517 24 6 2.1571 -2.6887 2.5766 25 6 2.9516 -2.0211 3.4888 26 6 3.2884 -0.6931 3.2721 27 8 4.0693 -0.0341 4.1682 28 6 2.8262 -0.0385 2.1394 29 1 -0.3635 0.4355 0.9307 30 1 -0.3634 0.5883 -0.8426 31 1 -0.3633 -1.0239 -0.0882 32 1 4.3024 1.4024 -1.6367 33 1 3.6926 0.8019 -0.0724 34 1 5.3517 -0.9737 -0.0222 35 1 6.2184 0.5317 -0.4241 36 1 10.4333 0.6295 -3.9862 37 1 4.8834 -2.6092 -2.1320 38 1 5.4910 -2.0061 -3.6944 39 1 2.9704 -1.7406 -3.3383 40 1 3.8371 -0.2352 -3.7401 41 1 1.0683 -2.5548 0.7423 42 1 1.8943 -3.7227 2.7451 43 1 3.3098 -2.5327 4.3699 44 1 3.5738 0.4114 4.8689 45 1 3.0868 0.9957 1.9687 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934788033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:18 Heat of formation + Delta-G solvation = -76.635740 kcal Electronic energy + Delta-G solvation = -29365.160655 eV Core-core repulsion = 25348.121135 eV Total energy + Delta-G solvation = -4017.039520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.69598 -39.49258 -38.05121 -36.97871 -35.85626 -34.08108 -32.97415 -32.47688 -30.94981 -30.44946 -29.19926 -27.44237 -26.24108 -24.71471 -23.22598 -22.79875 -22.45753 -21.36253 -19.72328 -18.71536 -17.94757 -17.27209 -16.69799 -16.25897 -15.88000 -15.80725 -15.52248 -15.28314 -14.97592 -14.51392 -14.32678 -14.08657 -13.99774 -13.81593 -13.62596 -13.09579 -12.69433 -12.56630 -12.41232 -12.29278 -12.15625 -11.88329 -11.66223 -11.59110 -11.44515 -11.29050 -11.15217 -10.99959 -10.95572 -10.73737 -10.59132 -10.26939 -10.07654 -9.76228 -8.99457 -8.92356 -8.73763 -8.62973 -7.65252 -7.25110 -6.25392 -4.71027 1.04086 1.11772 2.67735 3.09090 3.10638 3.17903 3.20218 3.42856 3.98926 4.03986 4.42977 4.47536 4.50666 4.54332 4.66350 4.86931 4.96245 5.05887 5.13668 5.29678 5.32176 5.35673 5.50987 5.55937 5.57881 5.63816 5.67594 5.70324 5.77305 5.91396 5.96358 6.00546 6.07536 6.21151 6.24876 6.29673 6.35672 6.37779 6.53685 6.60537 6.73313 7.39564 7.46556 7.49560 7.56026 8.05065 8.24669 8.27681 8.96340 9.34755 10.50896 10.69313 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.003896 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.775359 B = 7184.309000 C = 8555.192695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 H 0.100 0.900 4 C 0.522 3.478 5 O -0.546 6.546 6 N -0.600 5.600 7 C 0.087 3.913 8 C 0.112 3.888 9 N -0.642 5.642 10 C 0.559 3.441 11 O -0.576 6.576 12 C -0.545 4.545 13 H 0.073 0.927 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.264 1.264 20 C 0.109 3.891 21 C 0.099 3.901 22 C -0.058 4.058 23 C -0.114 4.114 24 C -0.101 4.101 25 C -0.145 4.145 26 C 0.108 3.892 27 O -0.496 6.496 28 C -0.137 4.137 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.106 0.894 36 H 0.269 0.731 37 H 0.045 0.955 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.388 0.612 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.847 1.809 14.294 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.094 4.094 3 H 0.118 0.882 4 C 0.310 3.690 5 O -0.425 6.425 6 N -0.333 5.333 7 C -0.037 4.037 8 C -0.014 4.014 9 N -0.380 5.380 10 C 0.365 3.635 11 O -0.458 6.458 12 C -0.581 4.581 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.395 5.395 16 Si 0.731 3.269 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.016 4.016 21 C -0.025 4.025 22 C -0.059 4.059 23 C -0.132 4.132 24 C -0.119 4.119 25 C -0.164 4.164 26 C 0.064 3.936 27 O -0.306 6.306 28 C -0.155 4.155 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.244 0.756 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.340 0.825 12.919 20.847 hybrid contribution 0.303 0.918 0.843 1.283 sum -16.037 1.742 13.763 21.204 Atomic orbital electron populations 1.21655 0.91488 1.03628 1.01955 1.20347 0.98281 0.99886 0.90868 0.88208 1.20344 0.81017 0.82686 0.84958 1.90647 1.56713 1.33605 1.61492 1.48088 1.15360 1.45544 1.24264 1.22479 0.91607 0.92649 0.96942 1.21830 0.94261 0.97674 0.87588 1.48170 1.17627 1.48448 1.23794 1.18286 0.78533 0.82763 0.83881 1.90598 1.71587 1.55041 1.28565 1.20943 1.04598 1.23100 1.09460 0.90889 1.25722 0.97398 0.95924 0.94129 1.70012 1.19175 1.35413 1.14906 0.86393 0.80159 0.80845 0.79530 1.19661 1.20433 1.18818 1.21479 0.88899 0.91948 0.99299 1.22107 0.97069 0.98439 0.84844 1.19303 0.97571 0.94363 0.94670 1.21136 1.00280 0.94075 0.97670 1.21022 0.97085 0.99856 0.93926 1.21455 0.99264 0.94738 1.00922 1.18381 0.93094 0.91118 0.91049 1.84884 1.34449 1.70314 1.40916 1.21313 0.98343 1.00725 0.95124 0.91810 0.91949 0.91052 0.90663 0.89824 0.93527 0.87649 0.92013 0.93663 0.88651 0.88960 0.91227 0.85305 0.85518 0.85471 0.75640 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.57 37.16 0.32 -0.93 16 2 C -0.07 -0.80 2.10 -92.93 -0.19 -1.00 16 3 H 0.10 0.94 6.41 -51.93 -0.33 0.61 16 4 C 0.52 7.72 6.42 -10.99 -0.07 7.65 16 5 O -0.55 -9.47 15.41 5.56 0.09 -9.39 16 6 N -0.60 -9.38 2.94 -172.22 -0.51 -9.89 16 7 C 0.09 1.28 6.34 -3.37 -0.02 1.26 16 8 C 0.11 2.04 6.52 -3.37 -0.02 2.01 16 9 N -0.64 -14.42 2.95 -173.87 -0.51 -14.93 16 10 C 0.56 15.62 7.61 -12.99 -0.10 15.52 16 11 O -0.58 -18.38 14.47 5.20 0.08 -18.30 16 12 C -0.54 -14.82 8.88 -35.63 -0.32 -15.13 16 13 H 0.07 1.79 5.63 -52.49 -0.30 1.49 16 14 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 15 N -0.77 -22.56 11.84 55.55 0.66 -21.91 16 16 Si 0.91 19.58 29.56 -169.99 -5.02 14.56 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 20 C 0.11 2.18 6.58 -3.59 -0.02 2.16 16 21 C 0.10 1.69 6.60 -3.59 -0.02 1.66 16 22 C -0.06 -0.65 4.51 -104.65 -0.47 -1.12 16 23 C -0.11 -1.29 8.86 -39.56 -0.35 -1.64 16 24 C -0.10 -1.03 10.04 -39.61 -0.40 -1.42 16 25 C -0.15 -1.47 9.99 -39.43 -0.39 -1.86 16 26 C 0.11 1.14 6.71 -39.22 -0.26 0.88 16 27 O -0.50 -4.77 13.50 -19.44 -0.26 -5.03 16 28 C -0.14 -1.42 8.64 -39.44 -0.34 -1.76 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.76 7.09 -51.93 -0.37 0.39 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.08 0.98 3.93 -51.93 -0.20 0.78 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.11 1.97 5.29 -51.93 -0.27 1.69 16 36 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 2.09 7.03 -51.93 -0.37 1.72 16 39 H 0.09 1.53 6.99 -51.93 -0.36 1.17 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.13 1.51 7.62 -52.49 -0.40 1.11 16 42 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.39 1.69 9.06 45.56 0.41 2.11 16 45 H 0.13 1.16 7.43 -52.48 -0.39 0.77 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -36.38 365.61 -7.84 -44.22 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.10 Total: 6.60 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -2.77 Total: 8.57 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.36 Total: -46.73 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.10 Total: -32.72 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.38 -7.84 -44.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934788033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.415 kcal (2) G-P(sol) polarization free energy of solvation -36.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds