Wall clock time and date at job start Tue Mar 31 2020 18:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46432 * 2 1 4 4 C 1.50695 * 109.47203 * 239.99756 * 2 1 3 5 5 O 1.21276 * 120.00431 * 334.40020 * 4 2 1 6 6 N 1.34782 * 119.99487 * 154.39914 * 4 2 1 7 7 C 1.46959 * 120.59695 * 4.93587 * 6 4 2 8 8 C 1.53810 * 108.39646 * 124.75871 * 7 6 4 9 9 N 1.46962 * 108.58046 * 49.64284 * 8 7 6 10 10 C 1.34773 * 120.59849 * 124.62522 * 9 8 7 11 11 O 1.21689 * 120.00092 * 174.72765 * 10 9 8 12 12 C 1.46371 * 119.99820 * 354.72722 * 10 9 8 13 13 H 1.07997 * 120.00141 * 5.37865 * 12 10 9 14 14 C 1.40048 * 119.99922 * 185.37846 * 12 10 9 15 15 N 1.30673 * 119.99924 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00158 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47156 * 90.00110 * 16 14 12 18 18 H 1.48499 * 109.47398 * 209.99838 * 16 14 12 19 19 H 1.48503 * 109.46946 * 330.00313 * 16 14 12 20 20 C 1.46968 * 118.80825 * 304.64322 * 9 8 7 21 21 C 1.46968 * 120.58975 * 185.22040 * 6 4 2 22 22 C 1.50696 * 109.46903 * 119.99436 * 2 1 3 23 23 C 1.38290 * 119.96997 * 59.73206 * 22 2 1 24 24 C 1.38245 * 120.10931 * 179.72357 * 23 22 2 25 25 C 1.38164 * 120.06090 * 0.54867 * 24 23 22 26 26 C 1.38716 * 119.93749 * 359.72456 * 25 24 23 27 27 O 1.35904 * 120.05135 * 179.97438 * 26 25 24 28 28 C 1.38120 * 119.97747 * 240.00427 * 22 2 1 29 29 H 1.08997 * 109.47901 * 295.07351 * 1 2 3 30 30 H 1.09001 * 109.47245 * 55.07637 * 1 2 3 31 31 H 1.09001 * 109.46914 * 175.07384 * 1 2 3 32 32 H 1.09003 * 109.61037 * 244.53967 * 7 6 4 33 33 H 1.09003 * 109.60913 * 5.05237 * 7 6 4 34 34 H 1.08998 * 109.74427 * 289.84487 * 8 7 6 35 35 H 1.09004 * 109.53092 * 169.30584 * 8 7 6 36 36 H 0.97009 * 119.99861 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.60730 * 295.48563 * 20 9 8 38 38 H 1.09000 * 109.75359 * 175.05610 * 20 9 8 39 39 H 1.08998 * 109.60927 * 354.94242 * 21 6 4 40 40 H 1.08994 * 109.61031 * 115.45650 * 21 6 4 41 41 H 1.07998 * 119.94540 * 359.97430 * 23 22 2 42 42 H 1.08007 * 119.97335 * 180.25453 * 24 23 22 43 43 H 1.07993 * 120.03403 * 179.70593 * 25 24 23 44 44 H 0.96695 * 113.99763 * 270.02110 * 27 26 25 45 45 H 1.08004 * 120.02825 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 1.3415 -1.5472 -1.7720 6 7 3.2494 -0.4158 -1.7288 7 6 4.1411 0.5156 -1.0238 8 6 5.4826 -0.1934 -0.7720 9 7 5.9394 -0.7930 -2.0335 10 6 7.1561 -0.4978 -2.5325 11 8 7.5622 -1.0721 -3.5255 12 6 7.9889 0.5137 -1.8799 13 1 7.6672 0.9607 -0.9510 14 6 9.2030 0.9017 -2.4603 15 7 9.5925 0.3604 -3.5840 16 14 10.2655 2.1931 -1.6279 17 1 11.2099 1.5297 -0.6933 18 1 11.0313 2.9420 -2.6564 19 1 9.4002 3.1340 -0.8722 20 6 5.0455 -1.7201 -2.7416 21 6 3.7061 -1.0155 -2.9905 22 6 2.0323 -0.7103 1.2305 23 6 1.6932 -2.0326 1.4517 24 6 2.1571 -2.6887 2.5766 25 6 2.9516 -2.0211 3.4888 26 6 3.2884 -0.6931 3.2721 27 8 4.0693 -0.0341 4.1682 28 6 2.8262 -0.0385 2.1394 29 1 -0.3635 0.4355 0.9307 30 1 -0.3634 0.5883 -0.8426 31 1 -0.3633 -1.0239 -0.0882 32 1 4.3024 1.4024 -1.6367 33 1 3.6926 0.8019 -0.0724 34 1 5.3517 -0.9737 -0.0222 35 1 6.2184 0.5317 -0.4241 36 1 10.4333 0.6295 -3.9862 37 1 4.8834 -2.6092 -2.1320 38 1 5.4910 -2.0061 -3.6944 39 1 2.9704 -1.7406 -3.3383 40 1 3.8371 -0.2352 -3.7401 41 1 1.0683 -2.5548 0.7423 42 1 1.8943 -3.7227 2.7451 43 1 3.3098 -2.5327 4.3699 44 1 3.5738 0.4114 4.8689 45 1 3.0868 0.9957 1.9687 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934788033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:17 Heat of formation + Delta-G solvation = -102.686745 kcal Electronic energy + Delta-G solvation = -29366.290311 eV Core-core repulsion = 25348.121135 eV Total energy + Delta-G solvation = -4018.169176 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.77333 -40.49139 -39.69409 -37.84281 -37.51447 -35.08641 -34.70250 -34.39155 -32.41963 -31.21921 -29.97969 -29.14048 -27.98207 -25.84197 -24.58048 -23.81477 -23.51871 -22.61196 -21.23483 -19.95787 -19.15121 -18.37573 -18.06972 -17.49311 -17.42374 -17.02610 -16.66656 -16.33130 -16.22357 -16.05178 -15.83238 -15.67005 -15.07882 -14.99458 -14.54754 -14.41985 -14.16847 -13.76258 -13.59630 -13.42306 -13.17092 -13.11734 -13.04989 -12.91158 -12.86004 -12.72484 -12.42751 -12.36650 -12.30312 -12.13698 -11.98165 -11.92338 -11.35248 -10.92962 -10.90906 -10.09744 -9.80241 -9.79679 -9.52892 -9.03524 -8.29137 -6.84304 0.24977 0.35471 1.42465 1.43451 1.52470 1.58780 1.85920 2.25117 2.46016 2.65684 2.78148 3.27045 3.46551 3.58258 3.69573 3.84581 3.91545 3.92714 4.11533 4.15658 4.21575 4.27742 4.30678 4.34709 4.43837 4.52170 4.58876 4.64070 4.70780 4.81705 4.84683 4.91250 4.97482 5.01800 5.04528 5.25823 5.34033 5.40958 5.45230 5.47482 5.57260 5.69295 5.88400 6.10208 6.27912 6.38802 6.88139 6.93976 7.06145 7.37451 8.44207 8.66633 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.003896 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.775359 B = 7184.309000 C = 8555.192695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.065 4.065 3 H 0.125 0.875 4 C 0.521 3.479 5 O -0.574 6.574 6 N -0.605 5.605 7 C 0.097 3.903 8 C 0.109 3.891 9 N -0.644 5.644 10 C 0.541 3.459 11 O -0.631 6.631 12 C -0.565 4.565 13 H 0.099 0.901 14 C 0.030 3.970 15 N -0.823 5.823 16 Si 0.994 3.006 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.241 1.241 20 C 0.111 3.889 21 C 0.111 3.889 22 C -0.065 4.065 23 C -0.131 4.131 24 C -0.105 4.105 25 C -0.153 4.153 26 C 0.105 3.895 27 O -0.508 6.508 28 C -0.140 4.140 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.050 0.950 35 H 0.104 0.896 36 H 0.274 0.726 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.117 0.883 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.411 0.589 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.625 4.190 17.313 25.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.086 4.086 3 H 0.143 0.857 4 C 0.311 3.689 5 O -0.454 6.454 6 N -0.337 5.337 7 C -0.026 4.026 8 C -0.015 4.015 9 N -0.381 5.381 10 C 0.348 3.652 11 O -0.519 6.519 12 C -0.601 4.601 13 H 0.117 0.883 14 C -0.185 4.185 15 N -0.452 5.452 16 Si 0.813 3.187 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.163 1.163 20 C -0.014 4.014 21 C -0.013 4.013 22 C -0.065 4.065 23 C -0.149 4.149 24 C -0.123 4.123 25 C -0.171 4.171 26 C 0.060 3.940 27 O -0.321 6.321 28 C -0.158 4.158 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.139 0.861 34 H 0.069 0.931 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.135 0.865 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.270 0.730 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.197 3.220 16.008 23.714 hybrid contribution 0.482 0.067 -0.029 0.487 sum -16.715 3.288 15.979 23.357 Atomic orbital electron populations 1.21655 0.90453 1.02969 1.03326 1.20392 0.99110 1.00430 0.88674 0.85739 1.21065 0.80160 0.82149 0.85555 1.90637 1.57350 1.34875 1.62537 1.48154 1.16051 1.45759 1.23736 1.22458 0.89623 0.91773 0.98714 1.22005 0.96104 0.97810 0.85544 1.48025 1.16597 1.48427 1.25012 1.18739 0.80087 0.82868 0.83530 1.90550 1.73430 1.56946 1.30941 1.21477 1.05101 1.23074 1.10426 0.88313 1.26992 0.98823 0.98244 0.94468 1.70197 1.20113 1.37709 1.17227 0.85069 0.77866 0.77469 0.78272 1.19005 1.20106 1.16337 1.21477 0.89888 0.92192 0.97809 1.21809 0.95224 0.98281 0.85955 1.19304 0.98107 0.94280 0.94846 1.21183 1.00922 0.94644 0.98120 1.21227 0.96856 1.00660 0.93547 1.21683 0.99112 0.94954 1.01351 1.18516 0.92721 0.91344 0.91374 1.84824 1.35193 1.70502 1.41598 1.21481 0.97933 1.01582 0.94817 0.89434 0.91717 0.92600 0.90299 0.86093 0.93123 0.87823 0.91657 0.93363 0.91438 0.88487 0.91541 0.86466 0.84065 0.84127 0.73024 0.83179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.57 71.98 0.62 -1.52 16 2 C -0.07 -1.26 2.10 -12.29 -0.03 -1.28 16 3 H 0.12 1.79 6.41 -2.39 -0.02 1.77 16 4 C 0.52 14.55 6.42 87.65 0.56 15.11 16 5 O -0.57 -19.55 15.41 -3.02 -0.05 -19.59 16 6 N -0.60 -18.02 2.94 -817.17 -2.40 -20.42 16 7 C 0.10 2.61 6.34 86.56 0.55 3.16 16 8 C 0.11 3.82 6.52 86.56 0.56 4.38 16 9 N -0.64 -29.32 2.95 -822.23 -2.42 -31.74 16 10 C 0.54 31.11 7.61 86.36 0.66 31.77 16 11 O -0.63 -42.41 14.47 -4.31 -0.06 -42.48 16 12 C -0.56 -30.76 8.88 24.83 0.22 -30.54 16 13 H 0.10 4.68 5.63 -2.91 -0.02 4.67 16 14 C 0.03 1.62 5.50 85.30 0.47 2.09 16 15 N -0.82 -49.83 11.84 21.84 0.26 -49.58 16 16 Si 0.99 39.49 29.56 68.60 2.03 41.52 16 17 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 18 H -0.28 -10.72 7.11 99.48 0.71 -10.02 16 19 H -0.24 -8.57 7.11 99.48 0.71 -7.87 16 20 C 0.11 4.60 6.58 86.42 0.57 5.17 16 21 C 0.11 3.82 6.60 86.42 0.57 4.39 16 22 C -0.06 -1.27 4.51 -19.88 -0.09 -1.36 16 23 C -0.13 -2.79 8.86 22.28 0.20 -2.59 16 24 C -0.10 -1.97 10.04 22.25 0.22 -1.74 16 25 C -0.15 -2.74 9.99 22.37 0.22 -2.52 16 26 C 0.10 1.91 6.71 22.51 0.15 2.06 16 27 O -0.51 -8.13 13.50 -92.47 -1.25 -9.38 16 28 C -0.14 -2.43 8.64 22.36 0.19 -2.23 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.13 7.09 -2.39 -0.02 1.11 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.12 2.34 3.93 -2.39 -0.01 2.33 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.10 3.66 5.29 -2.39 -0.01 3.64 16 36 H 0.27 15.05 8.29 -92.70 -0.77 14.28 16 37 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.07 3.16 7.03 -2.39 -0.02 3.15 16 39 H 0.10 3.25 6.99 -2.39 -0.02 3.23 16 40 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 41 H 0.12 2.73 7.62 -2.91 -0.02 2.71 16 42 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 43 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 44 H 0.41 2.21 9.06 -74.06 -0.67 1.54 16 45 H 0.15 1.96 7.43 -2.91 -0.02 1.94 16 Total: -1.00 -82.21 365.61 2.12 -80.09 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.37 Total: 27.24 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 5.65 Total: 24.35 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -4.57 Total: -101.74 kcal Atomic # 8 Polarization: -70.09 SS G_CDS: -1.36 Total: -71.45 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -82.21 2.12 -80.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934788033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.599 kcal (2) G-P(sol) polarization free energy of solvation -82.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds