Wall clock time and date at job start Tue Mar 31 2020 17:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.64393 * 2 1 4 4 C 1.54330 * 111.00312 * 236.91560 * 2 1 3 5 5 N 1.47017 * 107.26838 * 219.60268 * 4 2 1 6 6 C 1.34774 * 125.65166 * 178.85000 * 5 4 2 7 7 O 1.21587 * 119.99742 * 3.43000 * 6 5 4 8 8 C 1.47607 * 120.00334 * 183.43172 * 6 5 4 9 9 C 1.39701 * 120.10067 * 332.44153 * 8 6 5 10 10 C 1.37722 * 119.97128 * 180.31327 * 9 8 6 11 11 C 1.39004 * 120.26869 * 0.03164 * 10 9 8 12 12 C 1.39264 * 120.04965 * 359.88804 * 11 10 9 13 13 C 1.38291 * 119.95544 * 0.11904 * 12 11 10 14 14 O 1.36140 * 120.77003 * 180.27140 * 12 11 10 15 15 C 1.43173 * 116.70593 * 342.85516 * 14 12 11 16 16 C 1.53462 * 108.23623 * 46.13883 * 15 14 12 17 17 O 1.35968 * 119.24419 * 179.79653 * 11 10 9 18 18 C 1.47426 * 108.70409 * 358.58778 * 5 4 2 19 19 C 1.54909 * 104.82802 * 24.35511 * 18 5 4 20 20 H 1.09000 * 111.00751 * 81.07267 * 19 18 5 21 21 N 1.46507 * 111.00124 * 204.87789 * 19 18 5 22 22 C 1.36936 * 120.00089 * 273.54818 * 21 19 18 23 23 H 1.07999 * 120.00070 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99986 * 180.02562 * 22 21 19 25 25 N 1.31612 * 120.00131 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99766 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46914 * 90.00952 * 26 24 22 28 28 H 1.48500 * 109.47109 * 210.00481 * 26 24 22 29 29 H 1.48499 * 109.47548 * 330.00548 * 26 24 22 30 30 H 1.09003 * 109.47280 * 296.86483 * 1 2 3 31 31 H 1.09001 * 109.47056 * 56.86500 * 1 2 3 32 32 H 1.09000 * 109.47262 * 176.86308 * 1 2 3 33 33 H 1.08997 * 109.99171 * 100.12736 * 4 2 1 34 34 H 1.09003 * 109.78032 * 338.96023 * 4 2 1 35 35 H 1.08000 * 120.01273 * 0.33290 * 9 8 6 36 36 H 1.07998 * 119.86306 * 180.02562 * 10 9 8 37 37 H 1.07997 * 120.02324 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.70975 * 165.82418 * 15 14 12 39 39 H 1.08997 * 109.71224 * 286.45352 * 15 14 12 40 40 H 1.09000 * 109.71024 * 59.87461 * 16 15 14 41 41 H 1.09005 * 109.71258 * 180.45194 * 16 15 14 42 42 H 1.08999 * 110.36993 * 143.19242 * 18 5 4 43 43 H 1.09001 * 110.36884 * 265.51903 * 18 5 4 44 44 H 0.97006 * 119.99575 * 93.55155 * 21 19 18 45 45 H 0.96996 * 120.00087 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0831 -0.7865 -1.2072 5 7 3.2494 -1.5471 -0.7352 6 6 4.0004 -2.3786 -1.4841 7 8 3.7708 -2.5016 -2.6717 8 6 5.1016 -3.1401 -0.8626 9 6 5.7493 -2.6381 0.2689 10 6 6.7807 -3.3477 0.8428 11 6 7.1819 -4.5631 0.3005 12 6 6.5394 -5.0699 -0.8264 13 6 5.5031 -4.3621 -1.4073 14 8 6.9167 -6.2613 -1.3663 15 6 8.2002 -6.7649 -0.9807 16 6 8.3316 -6.6292 0.5422 17 8 8.2053 -5.2442 0.8814 18 6 3.4652 -1.2447 0.6915 19 6 2.0789 -0.7934 1.2152 20 1 1.4468 -1.6528 1.4386 21 7 2.2174 0.0721 2.3892 22 6 2.3124 -0.4793 3.6390 23 1 2.2847 -1.5522 3.7593 24 6 2.4431 0.3407 4.7513 25 7 2.5348 -0.1893 5.9525 26 14 2.4902 2.1965 4.5432 27 1 1.1092 2.7378 4.6154 28 1 3.3136 2.7951 5.6243 29 1 3.0850 2.5318 3.2245 30 1 -0.3634 0.4644 0.9168 31 1 -0.3633 0.5617 -0.8606 32 1 -0.3634 -1.0261 -0.0562 33 1 2.3849 -0.0963 -1.9950 34 1 1.3216 -1.4703 -1.5822 35 1 5.4410 -1.6941 0.6935 36 1 7.2799 -2.9582 1.7177 37 1 5.0044 -4.7539 -2.2814 38 1 8.2842 -7.8139 -1.2650 39 1 8.9841 -6.1869 -1.4702 40 1 7.5431 -7.2009 1.0316 41 1 9.3059 -6.9992 0.8616 42 1 3.7992 -2.1363 1.2220 43 1 4.1929 -0.4409 0.8031 44 1 2.2418 1.0358 2.2810 45 1 2.6265 0.3837 6.7298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939731699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:44 Heat of formation + Delta-G solvation = -49.310955 kcal Electronic energy + Delta-G solvation = -28670.307851 eV Core-core repulsion = 24654.453223 eV Total energy + Delta-G solvation = -4015.854628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.47796 -40.13525 -38.00407 -37.48361 -37.10538 -34.26647 -32.80480 -31.45311 -31.03013 -30.85835 -28.92809 -28.02694 -26.35397 -25.21915 -23.92938 -23.08005 -22.06510 -20.95014 -20.25392 -19.77209 -18.56113 -17.91953 -17.60621 -17.40043 -16.24430 -16.09664 -15.59835 -15.51847 -15.11425 -14.71725 -14.59413 -14.29034 -14.03348 -13.88637 -13.86609 -13.49979 -13.33445 -13.14065 -12.97748 -12.69860 -12.48655 -12.12202 -11.99774 -11.73235 -11.46274 -11.35169 -11.32387 -11.10781 -10.80264 -10.68084 -10.63808 -10.41442 -10.00732 -9.87263 -9.68280 -9.07884 -8.81845 -8.44910 -8.23533 -7.42931 -5.87967 -3.26389 0.78477 1.19523 2.61083 2.87771 2.95880 3.21224 3.29696 3.32694 3.39439 3.71033 3.91947 4.39100 4.47086 4.49056 4.51640 4.59223 4.84222 4.90364 4.95969 5.02726 5.09336 5.13112 5.21297 5.27305 5.36730 5.48619 5.63232 5.66157 5.68347 5.72738 5.81147 5.95292 5.97830 6.03462 6.08975 6.22390 6.23311 6.27255 6.33420 6.42593 6.51952 6.65672 6.70470 7.18352 7.65468 7.86127 8.26166 8.30583 9.06969 9.78960 9.96910 11.29549 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.003462 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.061162 B = 8086.427150 C = 9935.518647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 H 0.082 0.918 4 C 0.118 3.882 5 N -0.607 5.607 6 C 0.576 3.424 7 O -0.548 6.548 8 C -0.125 4.125 9 C -0.086 4.086 10 C -0.118 4.118 11 C 0.073 3.927 12 C 0.037 3.963 13 C -0.056 4.056 14 O -0.306 6.306 15 C 0.021 3.979 16 C 0.019 3.981 17 O -0.304 6.304 18 C 0.063 3.937 19 C 0.181 3.819 20 H 0.075 0.925 21 N -0.734 5.734 22 C -0.253 4.253 23 H 0.093 0.907 24 C 0.012 3.988 25 N -0.928 5.928 26 Si 0.882 3.118 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.276 1.276 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.364 0.636 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.787 -9.251 -13.631 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.101 0.899 4 C -0.005 4.005 5 N -0.339 5.339 6 C 0.366 3.634 7 O -0.427 6.427 8 C -0.128 4.128 9 C -0.104 4.104 10 C -0.136 4.136 11 C 0.027 3.973 12 C -0.008 4.008 13 C -0.076 4.076 14 O -0.221 6.221 15 C -0.055 4.055 16 C -0.057 4.057 17 O -0.218 6.218 18 C -0.062 4.062 19 C 0.070 3.930 20 H 0.093 0.907 21 N -0.376 5.376 22 C -0.383 4.383 23 H 0.110 0.890 24 C -0.185 4.185 25 N -0.574 5.574 26 Si 0.712 3.288 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.202 1.202 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.173 0.827 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.140 0.860 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.140 0.860 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.198 0.802 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.738 -9.561 -14.055 19.113 hybrid contribution 0.395 1.119 0.143 1.195 sum 9.133 -8.442 -13.911 18.660 Atomic orbital electron populations 1.21682 0.93639 1.01993 1.02029 1.22530 0.96720 0.99718 0.94738 0.89921 1.21979 0.87334 0.94449 0.96704 1.48343 1.29734 1.43617 1.12251 1.17727 0.81326 0.78834 0.85550 1.90761 1.70760 1.66358 1.14839 1.19514 0.99168 0.96141 0.97994 1.21804 0.94011 1.00984 0.93610 1.20452 0.98250 0.93446 1.01473 1.19175 0.91312 0.94491 0.92304 1.18639 0.99289 0.88803 0.94066 1.20329 0.95533 0.92381 0.99336 1.86330 1.35151 1.33544 1.67054 1.23628 0.84730 1.01872 0.95273 1.23665 1.05030 0.81266 0.95699 1.86297 1.46443 1.22815 1.66239 1.23809 1.02228 1.01169 0.79001 1.21369 0.92089 0.93759 0.85826 0.90676 1.42646 1.88649 1.03897 1.02410 1.19052 1.43615 0.94004 0.81626 0.88960 1.24668 1.01400 0.97348 0.95094 1.69691 1.56024 1.34263 0.97462 0.86599 0.77851 0.87204 0.77117 1.20964 1.21667 1.20225 0.91420 0.93005 0.92491 0.91648 0.91271 0.82713 0.83855 0.83862 0.86020 0.90471 0.90205 0.85960 0.89749 0.90807 0.80207 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.17 37.16 0.34 -1.39 16 2 C -0.12 -1.65 3.15 -88.78 -0.28 -1.93 16 3 H 0.08 1.15 8.00 -51.93 -0.42 0.73 16 4 C 0.12 1.65 6.48 -3.06 -0.02 1.63 16 5 N -0.61 -9.38 3.33 -171.72 -0.57 -9.95 16 6 C 0.58 9.54 7.63 -12.44 -0.09 9.45 16 7 O -0.55 -10.40 16.98 5.29 0.09 -10.31 16 8 C -0.12 -1.87 5.69 -104.99 -0.60 -2.47 16 9 C -0.09 -1.19 7.93 -39.22 -0.31 -1.50 16 10 C -0.12 -1.56 9.94 -39.49 -0.39 -1.95 16 11 C 0.07 0.96 6.50 -38.92 -0.25 0.71 16 12 C 0.04 0.49 6.48 -39.18 -0.25 0.24 16 13 C -0.06 -0.81 9.50 -39.02 -0.37 -1.18 16 14 O -0.31 -3.64 10.42 -32.94 -0.34 -3.98 16 15 C 0.02 0.16 7.26 37.40 0.27 0.43 16 16 C 0.02 0.15 7.26 37.40 0.27 0.42 16 17 O -0.30 -3.57 10.41 -32.39 -0.34 -3.91 16 18 C 0.06 1.00 4.71 -2.53 -0.01 0.99 16 19 C 0.18 3.12 3.13 -65.78 -0.21 2.91 16 20 H 0.08 1.36 8.04 -51.93 -0.42 0.95 16 21 N -0.73 -15.48 5.08 -51.35 -0.26 -15.75 16 22 C -0.25 -6.54 10.47 -15.06 -0.16 -6.69 16 23 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 24 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 25 N -0.93 -27.65 13.97 55.49 0.78 -26.87 16 26 Si 0.88 20.70 27.73 -169.99 -4.71 15.99 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.02 6.52 56.52 0.37 -5.65 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.95 7.78 -51.93 -0.40 0.54 16 35 H 0.16 2.10 4.56 -52.49 -0.24 1.86 16 36 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.14 2.02 7.88 -52.49 -0.41 1.61 16 38 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 1.37 6.17 -51.93 -0.32 1.05 16 43 H 0.07 1.16 7.28 -51.93 -0.38 0.79 16 44 H 0.36 7.58 5.58 -40.82 -0.23 7.35 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -32.34 364.25 -8.24 -40.58 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.21 Total: 8.82 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.16 Total: -0.12 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.06 Total: -52.57 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.59 Total: -18.20 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.71 Total: 15.99 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.34 -8.24 -40.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939731699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.728 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds