Wall clock time and date at job start Tue Mar 31 2020 17:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.64393 * 2 1 4 4 C 1.54330 * 111.00312 * 236.91560 * 2 1 3 5 5 N 1.47017 * 107.26838 * 219.60268 * 4 2 1 6 6 C 1.34774 * 125.65166 * 178.85000 * 5 4 2 7 7 O 1.21587 * 119.99742 * 3.43000 * 6 5 4 8 8 C 1.47607 * 120.00334 * 183.43172 * 6 5 4 9 9 C 1.39701 * 120.10067 * 332.44153 * 8 6 5 10 10 C 1.37722 * 119.97128 * 180.31327 * 9 8 6 11 11 C 1.39004 * 120.26869 * 0.03164 * 10 9 8 12 12 C 1.39264 * 120.04965 * 359.88804 * 11 10 9 13 13 C 1.38291 * 119.95544 * 0.11904 * 12 11 10 14 14 O 1.36140 * 120.77003 * 180.27140 * 12 11 10 15 15 C 1.43173 * 116.70593 * 342.85516 * 14 12 11 16 16 C 1.53462 * 108.23623 * 46.13883 * 15 14 12 17 17 O 1.35968 * 119.24419 * 179.79653 * 11 10 9 18 18 C 1.47426 * 108.70409 * 358.58778 * 5 4 2 19 19 C 1.54909 * 104.82802 * 24.35511 * 18 5 4 20 20 H 1.09000 * 111.00751 * 81.07267 * 19 18 5 21 21 N 1.46507 * 111.00124 * 204.87789 * 19 18 5 22 22 C 1.36936 * 120.00089 * 273.54818 * 21 19 18 23 23 H 1.07999 * 120.00070 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99986 * 180.02562 * 22 21 19 25 25 N 1.31612 * 120.00131 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99766 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46914 * 90.00952 * 26 24 22 28 28 H 1.48500 * 109.47109 * 210.00481 * 26 24 22 29 29 H 1.48499 * 109.47548 * 330.00548 * 26 24 22 30 30 H 1.09003 * 109.47280 * 296.86483 * 1 2 3 31 31 H 1.09001 * 109.47056 * 56.86500 * 1 2 3 32 32 H 1.09000 * 109.47262 * 176.86308 * 1 2 3 33 33 H 1.08997 * 109.99171 * 100.12736 * 4 2 1 34 34 H 1.09003 * 109.78032 * 338.96023 * 4 2 1 35 35 H 1.08000 * 120.01273 * 0.33290 * 9 8 6 36 36 H 1.07998 * 119.86306 * 180.02562 * 10 9 8 37 37 H 1.07997 * 120.02324 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.70975 * 165.82418 * 15 14 12 39 39 H 1.08997 * 109.71224 * 286.45352 * 15 14 12 40 40 H 1.09000 * 109.71024 * 59.87461 * 16 15 14 41 41 H 1.09005 * 109.71258 * 180.45194 * 16 15 14 42 42 H 1.08999 * 110.36993 * 143.19242 * 18 5 4 43 43 H 1.09001 * 110.36884 * 265.51903 * 18 5 4 44 44 H 0.97006 * 119.99575 * 93.55155 * 21 19 18 45 45 H 0.96996 * 120.00087 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0831 -0.7865 -1.2072 5 7 3.2494 -1.5471 -0.7352 6 6 4.0004 -2.3786 -1.4841 7 8 3.7708 -2.5016 -2.6717 8 6 5.1016 -3.1401 -0.8626 9 6 5.7493 -2.6381 0.2689 10 6 6.7807 -3.3477 0.8428 11 6 7.1819 -4.5631 0.3005 12 6 6.5394 -5.0699 -0.8264 13 6 5.5031 -4.3621 -1.4073 14 8 6.9167 -6.2613 -1.3663 15 6 8.2002 -6.7649 -0.9807 16 6 8.3316 -6.6292 0.5422 17 8 8.2053 -5.2442 0.8814 18 6 3.4652 -1.2447 0.6915 19 6 2.0789 -0.7934 1.2152 20 1 1.4468 -1.6528 1.4386 21 7 2.2174 0.0721 2.3892 22 6 2.3124 -0.4793 3.6390 23 1 2.2847 -1.5522 3.7593 24 6 2.4431 0.3407 4.7513 25 7 2.5348 -0.1893 5.9525 26 14 2.4902 2.1965 4.5432 27 1 1.1092 2.7378 4.6154 28 1 3.3136 2.7951 5.6243 29 1 3.0850 2.5318 3.2245 30 1 -0.3634 0.4644 0.9168 31 1 -0.3633 0.5617 -0.8606 32 1 -0.3634 -1.0261 -0.0562 33 1 2.3849 -0.0963 -1.9950 34 1 1.3216 -1.4703 -1.5822 35 1 5.4410 -1.6941 0.6935 36 1 7.2799 -2.9582 1.7177 37 1 5.0044 -4.7539 -2.2814 38 1 8.2842 -7.8139 -1.2650 39 1 8.9841 -6.1869 -1.4702 40 1 7.5431 -7.2009 1.0316 41 1 9.3059 -6.9992 0.8616 42 1 3.7992 -2.1363 1.2220 43 1 4.1929 -0.4409 0.8031 44 1 2.2418 1.0358 2.2810 45 1 2.6265 0.3837 6.7298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939731699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:42 Heat of formation + Delta-G solvation = -70.560199 kcal Electronic energy + Delta-G solvation = -28671.229287 eV Core-core repulsion = 24654.453223 eV Total energy + Delta-G solvation = -4016.776064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.40749 -41.35935 -39.24303 -38.37160 -38.25552 -35.97947 -34.14759 -32.99754 -32.16248 -31.90562 -29.84732 -29.51954 -27.45106 -26.22199 -25.51169 -24.16015 -23.34045 -22.10321 -21.58016 -20.91497 -19.52769 -19.48559 -18.91430 -18.33535 -17.54017 -17.22679 -16.76525 -16.53700 -16.29372 -15.98254 -15.72376 -15.45955 -15.21126 -14.99715 -14.89946 -14.83102 -14.75286 -14.54585 -14.12111 -14.06076 -13.58353 -13.39356 -13.21196 -12.97125 -12.90781 -12.81605 -12.35180 -12.14857 -12.05456 -11.99997 -11.90265 -11.76222 -11.57237 -11.36324 -11.19450 -10.91504 -9.92823 -9.69483 -9.33636 -9.21943 -7.97692 -5.33316 -0.31431 0.14259 1.44128 1.46657 1.52265 1.54170 1.80220 2.00663 2.23726 2.52965 2.59530 3.15605 3.22992 3.32187 3.56487 3.61793 3.69922 3.81323 3.92702 3.98863 4.01805 4.07329 4.11580 4.26136 4.33836 4.40645 4.50236 4.56351 4.56816 4.66488 4.69148 4.83727 4.88664 4.90202 4.94598 5.07696 5.08970 5.13477 5.18860 5.31084 5.40543 5.46986 5.78188 5.81949 6.24991 6.26465 6.36701 6.97675 7.10937 7.83732 8.03817 9.23141 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.003462 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.061162 B = 8086.427150 C = 9935.518647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 H 0.093 0.907 4 C 0.117 3.883 5 N -0.605 5.605 6 C 0.576 3.424 7 O -0.576 6.576 8 C -0.140 4.140 9 C -0.086 4.086 10 C -0.124 4.124 11 C 0.074 3.926 12 C 0.037 3.963 13 C -0.066 4.066 14 O -0.320 6.320 15 C 0.014 3.986 16 C 0.011 3.989 17 O -0.315 6.315 18 C 0.074 3.926 19 C 0.173 3.827 20 H 0.062 0.938 21 N -0.733 5.733 22 C -0.230 4.230 23 H 0.060 0.940 24 C -0.056 4.056 25 N -0.981 5.981 26 Si 0.949 3.051 27 H -0.281 1.281 28 H -0.302 1.302 29 H -0.246 1.246 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.140 0.860 38 H 0.158 0.842 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.160 0.840 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.370 0.630 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.678 -8.888 -15.142 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 H 0.111 0.889 4 C -0.005 4.005 5 N -0.336 5.336 6 C 0.366 3.634 7 O -0.458 6.458 8 C -0.143 4.143 9 C -0.105 4.105 10 C -0.143 4.143 11 C 0.028 3.972 12 C -0.008 4.008 13 C -0.086 4.086 14 O -0.235 6.235 15 C -0.061 4.061 16 C -0.063 4.063 17 O -0.229 6.229 18 C -0.051 4.051 19 C 0.063 3.937 20 H 0.080 0.920 21 N -0.376 5.376 22 C -0.361 4.361 23 H 0.078 0.922 24 C -0.248 4.248 25 N -0.631 5.631 26 Si 0.776 3.224 27 H -0.207 1.207 28 H -0.229 1.229 29 H -0.170 1.170 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.173 0.827 36 H 0.173 0.827 37 H 0.157 0.843 38 H 0.176 0.824 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.177 0.823 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.204 0.796 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.629 -9.210 -15.630 20.539 hybrid contribution 0.188 0.777 0.573 0.983 sum 9.816 -8.433 -15.057 19.854 Atomic orbital electron populations 1.21672 0.92395 1.02453 1.02553 1.22464 0.97682 0.99598 0.92582 0.88854 1.22096 0.86920 0.94616 0.96864 1.48335 1.29973 1.43470 1.11841 1.17939 0.81515 0.78682 0.85229 1.90736 1.71752 1.67337 1.15944 1.19460 0.99445 0.96641 0.98786 1.21775 0.94264 1.01082 0.93351 1.20629 0.98169 0.93650 1.01815 1.19256 0.91348 0.94524 0.92071 1.18645 0.98883 0.89283 0.94020 1.20359 0.96148 0.92575 0.99482 1.86311 1.37340 1.32635 1.67252 1.24032 0.82971 1.03832 0.95229 1.24062 1.07197 0.79159 0.95901 1.86284 1.45570 1.24844 1.66245 1.23559 1.01223 1.01058 0.79229 1.21494 0.92862 0.93530 0.85837 0.91991 1.42523 1.88719 1.04499 1.01836 1.18969 1.40921 0.92650 0.83525 0.92191 1.25422 1.02391 1.02285 0.94698 1.69873 1.58825 1.35952 0.98461 0.85511 0.77754 0.81105 0.77993 1.20715 1.22880 1.17007 0.92658 0.90412 0.92415 0.90449 0.90765 0.82672 0.82677 0.84251 0.82446 0.89812 0.90057 0.82280 0.90441 0.90162 0.79566 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.17 71.98 0.66 -2.41 16 2 C -0.10 -2.69 3.15 -9.60 -0.03 -2.72 16 3 H 0.09 2.28 8.00 -2.39 -0.02 2.26 16 4 C 0.12 3.06 6.48 86.73 0.56 3.62 16 5 N -0.60 -18.16 3.33 -815.46 -2.71 -20.87 16 6 C 0.58 18.99 7.63 86.72 0.66 19.65 16 7 O -0.58 -21.84 16.98 -3.99 -0.07 -21.90 16 8 C -0.14 -4.23 5.69 -20.10 -0.11 -4.35 16 9 C -0.09 -2.39 7.93 22.50 0.18 -2.21 16 10 C -0.12 -3.23 9.94 22.33 0.22 -3.01 16 11 C 0.07 1.91 6.50 22.70 0.15 2.05 16 12 C 0.04 0.97 6.48 22.53 0.15 1.12 16 13 C -0.07 -1.92 9.50 22.63 0.21 -1.70 16 14 O -0.32 -7.22 10.42 -82.95 -0.86 -8.09 16 15 C 0.01 0.17 7.26 72.14 0.52 0.70 16 16 C 0.01 0.14 7.26 72.14 0.52 0.67 16 17 O -0.32 -6.90 10.41 -81.00 -0.84 -7.75 16 18 C 0.07 2.31 4.71 86.85 0.41 2.72 16 19 C 0.17 5.79 3.13 46.38 0.15 5.93 16 20 H 0.06 2.25 8.04 -2.39 -0.02 2.24 16 21 N -0.73 -30.12 5.08 -316.36 -1.61 -31.72 16 22 C -0.23 -11.96 10.47 84.03 0.88 -11.08 16 23 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 24 C -0.06 -3.09 5.50 84.86 0.47 -2.63 16 25 N -0.98 -60.04 13.97 21.65 0.30 -59.74 16 26 Si 0.95 42.37 27.73 68.60 1.90 44.28 16 27 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 28 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 29 H -0.25 -9.62 6.52 99.48 0.65 -8.97 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.89 7.78 -2.39 -0.02 1.87 16 35 H 0.16 4.18 4.56 -2.91 -0.01 4.16 16 36 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.14 4.05 7.88 -2.91 -0.02 4.02 16 38 H 0.16 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.16 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.08 2.53 6.17 -2.39 -0.01 2.51 16 43 H 0.08 2.42 7.28 -2.39 -0.02 2.41 16 44 H 0.37 14.48 5.58 -92.70 -0.52 13.97 16 45 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -71.18 364.25 2.16 -69.03 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.45 Total: 30.42 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 5.60 Total: 6.35 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -4.02 Total: -112.34 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -1.77 Total: -37.74 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.90 Total: 44.28 kcal Total: -71.18 2.16 -69.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939731699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.533 kcal (2) G-P(sol) polarization free energy of solvation -71.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds