Wall clock time and date at job start Tue Mar 31 2020 17:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.64408 * 2 1 4 4 C 1.54333 * 110.85249 * 236.82872 * 2 1 3 5 5 N 1.47020 * 107.26487 * 219.67971 * 4 2 1 6 6 C 1.34773 * 125.64918 * 178.84954 * 5 4 2 7 7 O 1.21284 * 120.00163 * 359.71882 * 6 5 4 8 8 C 1.50702 * 120.00431 * 179.71324 * 6 5 4 9 9 C 1.54416 * 129.01632 * 180.02562 * 8 6 5 10 10 C 1.54414 * 78.89093 * 180.64541 * 9 8 6 11 11 C 1.53006 * 129.00834 * 180.64555 * 10 9 8 12 12 F 1.39897 * 109.47129 * 60.00029 * 11 10 9 13 13 F 1.39900 * 109.46764 * 180.02562 * 11 10 9 14 14 F 1.39895 * 109.46931 * 299.99750 * 11 10 9 15 15 C 1.54883 * 84.49859 * 43.15251 * 10 9 8 16 16 C 1.54888 * 84.49774 * 318.13313 * 10 9 8 17 17 C 1.47427 * 108.70631 * 358.58227 * 5 4 2 18 18 C 1.54916 * 104.82897 * 24.36037 * 17 5 4 19 19 H 1.08992 * 111.00210 * 81.06424 * 18 17 5 20 20 N 1.46500 * 111.00286 * 204.87843 * 18 17 5 21 21 C 1.36928 * 120.00013 * 273.54746 * 20 18 17 22 22 H 1.07999 * 120.00329 * 359.97438 * 21 20 18 23 23 C 1.38811 * 120.00264 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00047 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00482 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46935 * 59.99072 * 25 23 21 27 27 H 1.48497 * 109.47509 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47024 * 299.99847 * 25 23 21 29 29 H 1.09002 * 109.47583 * 296.86913 * 1 2 3 30 30 H 1.09007 * 109.46605 * 56.86311 * 1 2 3 31 31 H 1.08998 * 109.47613 * 176.85787 * 1 2 3 32 32 H 1.08995 * 109.99097 * 100.20128 * 4 2 1 33 33 H 1.09001 * 109.78023 * 339.02899 * 4 2 1 34 34 H 1.08996 * 114.93043 * 68.15441 * 9 8 6 35 35 H 1.08999 * 114.98384 * 293.12917 * 9 8 6 36 36 H 1.09006 * 114.97848 * 69.38868 * 15 10 9 37 37 H 1.08990 * 114.98368 * 204.56491 * 15 10 9 38 38 H 1.08994 * 114.98153 * 155.43353 * 16 10 9 39 39 H 1.09000 * 114.97994 * 290.61440 * 16 10 9 40 40 H 1.08992 * 110.36947 * 143.19536 * 17 5 4 41 41 H 1.09001 * 110.36823 * 265.52323 * 17 5 4 42 42 H 0.97001 * 120.00282 * 93.54280 * 20 18 17 43 43 H 0.96997 * 120.00458 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0794 -0.7891 -1.2072 5 7 3.2444 -1.5521 -0.7361 6 6 3.9923 -2.3863 -1.4853 7 8 3.7194 -2.5611 -2.6540 8 6 5.1677 -3.1019 -0.8709 9 6 6.1546 -4.0917 -1.5272 10 6 6.6905 -4.0531 -0.0796 11 6 7.8883 -4.7896 0.5238 12 9 9.0547 -4.4148 -0.1516 13 9 8.0057 -4.4577 1.8778 14 9 7.6990 -6.1698 0.3972 15 6 5.1955 -4.1300 0.3176 16 6 6.4319 -2.5294 -0.1829 17 6 3.4632 -1.2487 0.6899 18 6 2.0788 -0.7934 1.2153 19 1 1.4451 -1.6510 1.4404 20 7 2.2212 0.0730 2.3880 21 6 2.3168 -0.4772 3.6382 22 1 2.2867 -1.5499 3.7599 23 6 2.4512 0.3437 4.7495 24 7 2.4873 1.6510 4.6015 25 14 2.5808 -0.4069 6.4552 26 1 3.7713 -1.2925 6.5171 27 1 2.7163 0.6750 7.4632 28 1 1.3585 -1.2003 6.7410 29 1 -0.3634 0.4645 0.9167 30 1 -0.3633 0.5618 -0.8606 31 1 -0.3634 -1.0261 -0.0563 32 1 2.3815 -0.1005 -1.9962 33 1 1.3157 -1.4715 -1.5803 34 1 6.8163 -3.6533 -2.2742 35 1 5.7186 -5.0435 -1.8305 36 1 4.7114 -5.0835 0.1058 37 1 4.9591 -3.7245 1.3012 38 1 6.2727 -2.0240 0.7695 39 1 7.0977 -1.9944 -0.8601 40 1 3.7958 -2.1405 1.2209 41 1 4.1931 -0.4465 0.7995 42 1 2.2479 1.0365 2.2789 43 1 2.5816 2.2247 5.3779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939815559.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:39 Heat of formation + Delta-G solvation = -73.864669 kcal Electronic energy + Delta-G solvation = -29526.357623 eV Core-core repulsion = 24967.581526 eV Total energy + Delta-G solvation = -4558.776097 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.24849 -47.80384 -47.77182 -42.40108 -39.49079 -37.50156 -34.16426 -32.58371 -30.80800 -28.55590 -27.63533 -26.76444 -26.20968 -26.07644 -24.29635 -23.58289 -21.56382 -20.28019 -19.91615 -18.58290 -18.57504 -18.50467 -17.55458 -17.24918 -16.32070 -15.99035 -15.04286 -14.90858 -14.81915 -14.71021 -14.45497 -14.44596 -14.21535 -14.07518 -13.93796 -13.93692 -13.67550 -13.21091 -13.07960 -12.91792 -12.81738 -12.13630 -12.06402 -11.86597 -11.80408 -11.72457 -11.53076 -11.18004 -11.05645 -10.81431 -10.73105 -10.69627 -10.65037 -10.33728 -10.00842 -9.91425 -9.76820 -9.08563 -8.47731 -7.16566 -5.91850 -3.23171 2.38045 2.40688 2.97059 3.30183 3.32137 3.35427 3.40870 3.41594 3.55309 3.86547 4.03170 4.16363 4.41584 4.42090 4.42958 4.55824 4.95691 5.03406 5.13891 5.19762 5.25245 5.36225 5.45583 5.50701 5.52234 5.55838 5.59076 5.67278 5.69785 5.74981 5.85207 5.94014 6.13292 6.16815 6.28013 6.37833 6.41739 6.53920 6.78357 7.55681 7.62953 8.18694 8.25667 9.37680 9.90427 10.25329 11.29814 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.004111 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.225618 B = 6810.178495 C = 9181.068231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 H 0.085 0.915 4 C 0.117 3.883 5 N -0.604 5.604 6 C 0.589 3.411 7 O -0.543 6.543 8 C -0.145 4.145 9 C -0.063 4.063 10 C -0.222 4.222 11 C 0.522 3.478 12 F -0.177 7.177 13 F -0.173 7.173 14 F -0.177 7.177 15 C -0.075 4.075 16 C -0.073 4.073 17 C 0.069 3.931 18 C 0.177 3.823 19 H 0.066 0.934 20 N -0.710 5.710 21 C -0.251 4.251 22 H 0.071 0.929 23 C -0.005 4.005 24 N -0.928 5.928 25 Si 0.906 3.094 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.387 0.613 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.290 -9.666 -11.043 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 H 0.103 0.897 4 C -0.005 4.005 5 N -0.336 5.336 6 C 0.377 3.623 7 O -0.421 6.421 8 C -0.148 4.148 9 C -0.100 4.100 10 C -0.224 4.224 11 C 0.468 3.532 12 F -0.158 7.158 13 F -0.154 7.154 14 F -0.159 7.159 15 C -0.113 4.113 16 C -0.110 4.110 17 C -0.056 4.056 18 C 0.065 3.935 19 H 0.084 0.916 20 N -0.350 5.350 21 C -0.382 4.382 22 H 0.089 0.911 23 C -0.202 4.202 24 N -0.575 5.575 25 Si 0.737 3.263 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.222 0.778 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.200 -9.885 -11.493 16.378 hybrid contribution 0.548 -0.194 1.190 1.324 sum 6.748 -10.079 -10.303 15.915 Atomic orbital electron populations 1.21670 0.93811 1.01613 1.02125 1.22489 0.96552 0.99860 0.94417 0.89662 1.22023 0.87232 0.94313 0.96963 1.48389 1.29571 1.43012 1.12623 1.17950 0.81137 0.78403 0.84860 1.90700 1.70718 1.64556 1.16102 1.23982 0.94963 0.97951 0.97934 1.23691 0.94952 0.99258 0.92127 1.24915 0.94859 1.00711 1.01906 1.18434 0.82167 0.76740 0.75908 1.93193 1.51250 1.91234 1.80162 1.93226 1.96315 1.92259 1.33636 1.93192 1.95203 1.31764 1.95699 1.24545 0.89435 0.98979 0.98299 1.24046 0.94066 0.91220 1.01674 1.23660 1.02811 1.00890 0.78285 1.21359 0.91673 0.93769 0.86730 0.91649 1.42280 1.86875 1.05133 1.00665 1.19158 1.43565 0.91846 0.83601 0.91062 1.24747 1.02143 0.95309 0.97973 1.69639 1.56192 1.02051 1.29645 0.86295 0.78007 0.77892 0.84134 1.21099 1.21607 1.21116 0.91272 0.93127 0.92850 0.91733 0.91397 0.89193 0.89116 0.89025 0.88240 0.88231 0.89226 0.91062 0.91001 0.77803 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.16 37.16 0.34 -1.44 16 2 C -0.11 -1.64 3.16 -88.78 -0.28 -1.92 16 3 H 0.09 1.28 7.99 -51.93 -0.42 0.86 16 4 C 0.12 1.62 6.48 -3.06 -0.02 1.60 16 5 N -0.60 -8.84 3.33 -170.51 -0.57 -9.40 16 6 C 0.59 8.81 7.96 -10.99 -0.09 8.72 16 7 O -0.54 -9.63 17.42 5.55 0.10 -9.53 16 8 C -0.15 -1.74 2.67 -171.00 -0.46 -2.19 16 9 C -0.06 -0.64 7.78 -26.70 -0.21 -0.85 16 10 C -0.22 -2.30 2.89 -171.12 -0.49 -2.79 16 11 C 0.52 5.65 3.63 37.16 0.13 5.79 16 12 F -0.18 -1.95 17.32 2.25 0.04 -1.91 16 13 F -0.17 -2.08 17.32 2.25 0.04 -2.04 16 14 F -0.18 -1.95 17.32 2.25 0.04 -1.91 16 15 C -0.08 -0.80 7.43 -24.72 -0.18 -0.98 16 16 C -0.07 -0.78 7.71 -25.98 -0.20 -0.98 16 17 C 0.07 1.07 6.27 -2.52 -0.02 1.06 16 18 C 0.18 3.06 3.13 -65.77 -0.21 2.85 16 19 H 0.07 1.17 8.03 -51.93 -0.42 0.75 16 20 N -0.71 -15.66 5.28 -51.35 -0.27 -15.93 16 21 C -0.25 -6.28 9.98 -15.06 -0.15 -6.43 16 22 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 23 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 24 N -0.93 -26.11 13.06 55.49 0.72 -25.39 16 25 Si 0.91 21.02 29.55 -169.99 -5.02 16.00 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.91 7.77 -51.93 -0.40 0.51 16 34 H 0.09 0.86 7.94 -51.93 -0.41 0.45 16 35 H 0.09 0.86 7.91 -51.93 -0.41 0.45 16 36 H 0.09 0.88 7.91 -51.93 -0.41 0.47 16 37 H 0.10 1.09 6.68 -51.93 -0.35 0.74 16 38 H 0.10 1.10 7.97 -51.93 -0.41 0.69 16 39 H 0.09 0.88 7.93 -51.93 -0.41 0.46 16 40 H 0.07 1.06 5.92 -51.93 -0.31 0.76 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.39 9.20 7.71 -40.82 -0.31 8.89 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -28.51 366.20 -7.25 -35.76 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.92 Total: 6.62 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.92 Total: 2.21 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.11 Total: -50.73 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.10 Total: -9.53 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.12 Total: -5.86 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.51 -7.25 -35.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939815559.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.102 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds