Wall clock time and date at job start Tue Mar 31 2020 17:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.64408 * 2 1 4 4 C 1.54333 * 110.85249 * 236.82872 * 2 1 3 5 5 N 1.47020 * 107.26487 * 219.67971 * 4 2 1 6 6 C 1.34773 * 125.64918 * 178.84954 * 5 4 2 7 7 O 1.21284 * 120.00163 * 359.71882 * 6 5 4 8 8 C 1.50702 * 120.00431 * 179.71324 * 6 5 4 9 9 C 1.54416 * 129.01632 * 180.02562 * 8 6 5 10 10 C 1.54414 * 78.89093 * 180.64541 * 9 8 6 11 11 C 1.53006 * 129.00834 * 180.64555 * 10 9 8 12 12 F 1.39897 * 109.47129 * 60.00029 * 11 10 9 13 13 F 1.39900 * 109.46764 * 180.02562 * 11 10 9 14 14 F 1.39895 * 109.46931 * 299.99750 * 11 10 9 15 15 C 1.54883 * 84.49859 * 43.15251 * 10 9 8 16 16 C 1.54888 * 84.49774 * 318.13313 * 10 9 8 17 17 C 1.47427 * 108.70631 * 358.58227 * 5 4 2 18 18 C 1.54916 * 104.82897 * 24.36037 * 17 5 4 19 19 H 1.08992 * 111.00210 * 81.06424 * 18 17 5 20 20 N 1.46500 * 111.00286 * 204.87843 * 18 17 5 21 21 C 1.36928 * 120.00013 * 273.54746 * 20 18 17 22 22 H 1.07999 * 120.00329 * 359.97438 * 21 20 18 23 23 C 1.38811 * 120.00264 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00047 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00482 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46935 * 59.99072 * 25 23 21 27 27 H 1.48497 * 109.47509 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47024 * 299.99847 * 25 23 21 29 29 H 1.09002 * 109.47583 * 296.86913 * 1 2 3 30 30 H 1.09007 * 109.46605 * 56.86311 * 1 2 3 31 31 H 1.08998 * 109.47613 * 176.85787 * 1 2 3 32 32 H 1.08995 * 109.99097 * 100.20128 * 4 2 1 33 33 H 1.09001 * 109.78023 * 339.02899 * 4 2 1 34 34 H 1.08996 * 114.93043 * 68.15441 * 9 8 6 35 35 H 1.08999 * 114.98384 * 293.12917 * 9 8 6 36 36 H 1.09006 * 114.97848 * 69.38868 * 15 10 9 37 37 H 1.08990 * 114.98368 * 204.56491 * 15 10 9 38 38 H 1.08994 * 114.98153 * 155.43353 * 16 10 9 39 39 H 1.09000 * 114.97994 * 290.61440 * 16 10 9 40 40 H 1.08992 * 110.36947 * 143.19536 * 17 5 4 41 41 H 1.09001 * 110.36823 * 265.52323 * 17 5 4 42 42 H 0.97001 * 120.00282 * 93.54280 * 20 18 17 43 43 H 0.96997 * 120.00458 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0794 -0.7891 -1.2072 5 7 3.2444 -1.5521 -0.7361 6 6 3.9923 -2.3863 -1.4853 7 8 3.7194 -2.5611 -2.6540 8 6 5.1677 -3.1019 -0.8709 9 6 6.1546 -4.0917 -1.5272 10 6 6.6905 -4.0531 -0.0796 11 6 7.8883 -4.7896 0.5238 12 9 9.0547 -4.4148 -0.1516 13 9 8.0057 -4.4577 1.8778 14 9 7.6990 -6.1698 0.3972 15 6 5.1955 -4.1300 0.3176 16 6 6.4319 -2.5294 -0.1829 17 6 3.4632 -1.2487 0.6899 18 6 2.0788 -0.7934 1.2153 19 1 1.4451 -1.6510 1.4404 20 7 2.2212 0.0730 2.3880 21 6 2.3168 -0.4772 3.6382 22 1 2.2867 -1.5499 3.7599 23 6 2.4512 0.3437 4.7495 24 7 2.4873 1.6510 4.6015 25 14 2.5808 -0.4069 6.4552 26 1 3.7713 -1.2925 6.5171 27 1 2.7163 0.6750 7.4632 28 1 1.3585 -1.2003 6.7410 29 1 -0.3634 0.4645 0.9167 30 1 -0.3633 0.5618 -0.8606 31 1 -0.3634 -1.0261 -0.0563 32 1 2.3815 -0.1005 -1.9962 33 1 1.3157 -1.4715 -1.5803 34 1 6.8163 -3.6533 -2.2742 35 1 5.7186 -5.0435 -1.8305 36 1 4.7114 -5.0835 0.1058 37 1 4.9591 -3.7245 1.3012 38 1 6.2727 -2.0240 0.7695 39 1 7.0977 -1.9944 -0.8601 40 1 3.7958 -2.1405 1.2209 41 1 4.1931 -0.4465 0.7995 42 1 2.2479 1.0365 2.2789 43 1 2.5816 2.2247 5.3779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939815559.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:38 Heat of formation + Delta-G solvation = -88.901857 kcal Electronic energy + Delta-G solvation = -29527.009684 eV Core-core repulsion = 24967.581526 eV Total energy + Delta-G solvation = -4559.428159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.12424 -48.66862 -48.66549 -43.29380 -40.71455 -38.80711 -35.85491 -33.93856 -32.49617 -29.49489 -29.13278 -27.80483 -27.05581 -26.94365 -25.91277 -24.80508 -22.87371 -21.43221 -21.11643 -19.56003 -19.44755 -19.42753 -19.07776 -18.50827 -17.53843 -17.32981 -16.35854 -16.13856 -15.74211 -15.68213 -15.54561 -15.33236 -15.29796 -15.25586 -15.09416 -14.82043 -14.81863 -14.57819 -14.47607 -14.28121 -14.01627 -13.32337 -13.10492 -12.94866 -12.89807 -12.79987 -12.76920 -12.75330 -12.35961 -12.24259 -12.12670 -11.97865 -11.68981 -11.59099 -11.52095 -11.36012 -11.05195 -10.88271 -9.73115 -9.01896 -7.92017 -5.21174 1.27671 1.48504 1.52703 1.52871 1.58777 1.86830 2.44773 2.47723 2.58156 2.67491 2.98130 3.15900 3.23341 3.34110 3.40346 3.56764 3.57231 3.79088 3.81531 3.95887 4.19371 4.34372 4.39008 4.44938 4.46739 4.52572 4.62038 4.69274 4.70106 4.73514 4.77206 4.79604 4.90554 4.93823 5.11557 5.14443 5.20343 5.35788 5.47722 5.58163 6.28643 6.42068 7.00820 7.37329 8.08625 8.32605 9.30530 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.004111 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.225618 B = 6810.178495 C = 9181.068231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 H 0.080 0.920 4 C 0.119 3.881 5 N -0.603 5.603 6 C 0.590 3.410 7 O -0.571 6.571 8 C -0.163 4.163 9 C -0.055 4.055 10 C -0.214 4.214 11 C 0.525 3.475 12 F -0.177 7.177 13 F -0.181 7.181 14 F -0.177 7.177 15 C -0.071 4.071 16 C -0.070 4.070 17 C 0.085 3.915 18 C 0.170 3.830 19 H 0.063 0.937 20 N -0.719 5.719 21 C -0.239 4.239 22 H 0.079 0.921 23 C -0.065 4.065 24 N -0.965 5.965 25 Si 0.962 3.038 26 H -0.278 1.278 27 H -0.301 1.301 28 H -0.280 1.280 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.377 0.623 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.570 -11.148 -11.830 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.123 4.123 3 H 0.098 0.902 4 C -0.004 4.004 5 N -0.335 5.335 6 C 0.379 3.621 7 O -0.452 6.452 8 C -0.166 4.166 9 C -0.092 4.092 10 C -0.215 4.215 11 C 0.471 3.529 12 F -0.159 7.159 13 F -0.162 7.162 14 F -0.158 7.158 15 C -0.108 4.108 16 C -0.107 4.107 17 C -0.041 4.041 18 C 0.060 3.940 19 H 0.081 0.919 20 N -0.358 5.358 21 C -0.371 4.371 22 H 0.097 0.903 23 C -0.258 4.258 24 N -0.615 5.615 25 Si 0.792 3.208 26 H -0.204 1.204 27 H -0.227 1.227 28 H -0.206 1.206 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.210 0.790 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.478 -11.414 -12.309 17.993 hybrid contribution 0.440 0.228 1.336 1.425 sum 6.918 -11.186 -10.973 17.129 Atomic orbital electron populations 1.21628 0.92648 1.02350 1.02088 1.22397 0.97478 0.99213 0.93217 0.90204 1.22052 0.87239 0.94469 0.96604 1.48397 1.29852 1.43102 1.12123 1.18317 0.81431 0.77929 0.84459 1.90683 1.71668 1.65496 1.17321 1.23907 0.94639 0.98839 0.99209 1.23715 0.94262 0.99182 0.92080 1.24738 0.94486 1.00248 1.02037 1.18413 0.82210 0.76733 0.75540 1.93195 1.51331 1.91238 1.80105 1.93215 1.96360 1.92329 1.34285 1.93195 1.95197 1.31765 1.95663 1.24571 0.89694 0.99043 0.97492 1.24069 0.93517 0.91658 1.01495 1.23288 1.01069 1.00826 0.78887 1.21514 0.92765 0.93470 0.86300 0.91886 1.42372 1.87047 1.05108 1.01295 1.19528 1.40715 0.92169 0.84682 0.90287 1.25413 1.03556 0.95676 1.01110 1.69780 1.58760 1.03173 1.29812 0.85385 0.78165 0.76843 0.80398 1.20410 1.22711 1.20583 0.93338 0.90834 0.92006 0.91001 0.90544 0.88371 0.88150 0.87758 0.88615 0.88753 0.88232 0.90340 0.91938 0.79034 0.94086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.16 71.98 0.66 -2.57 16 2 C -0.10 -2.88 3.16 -9.60 -0.03 -2.91 16 3 H 0.08 2.34 7.99 -2.39 -0.02 2.32 16 4 C 0.12 3.08 6.48 86.73 0.56 3.64 16 5 N -0.60 -16.77 3.33 -811.77 -2.70 -19.47 16 6 C 0.59 16.72 7.96 87.66 0.70 17.41 16 7 O -0.57 -19.45 17.42 -3.04 -0.05 -19.51 16 8 C -0.16 -3.60 2.67 -62.86 -0.17 -3.77 16 9 C -0.05 -0.99 7.78 30.61 0.24 -0.76 16 10 C -0.21 -3.97 2.89 -62.94 -0.18 -4.15 16 11 C 0.53 10.38 3.63 71.98 0.26 10.65 16 12 F -0.18 -3.58 17.32 44.97 0.78 -2.80 16 13 F -0.18 -4.05 17.32 44.97 0.78 -3.27 16 14 F -0.18 -3.54 17.32 44.97 0.78 -2.76 16 15 C -0.07 -1.36 7.43 31.90 0.24 -1.12 16 16 C -0.07 -1.38 7.71 31.08 0.24 -1.14 16 17 C 0.08 2.53 6.27 86.86 0.54 3.08 16 18 C 0.17 5.73 3.13 46.39 0.15 5.88 16 19 H 0.06 2.18 8.03 -2.39 -0.02 2.16 16 20 N -0.72 -31.70 5.28 -316.37 -1.67 -33.37 16 21 C -0.24 -11.88 9.98 84.03 0.84 -11.04 16 22 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 23 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 24 N -0.97 -55.22 13.06 21.65 0.28 -54.93 16 25 Si 0.96 43.24 29.55 68.60 2.03 45.27 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 27 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.06 1.43 8.07 -2.39 -0.02 1.41 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 1.89 7.77 -2.39 -0.02 1.87 16 34 H 0.10 1.63 7.94 -2.39 -0.02 1.61 16 35 H 0.10 1.64 7.91 -2.39 -0.02 1.63 16 36 H 0.10 1.74 7.91 -2.38 -0.02 1.72 16 37 H 0.10 1.92 6.68 -2.39 -0.02 1.90 16 38 H 0.09 1.96 7.97 -2.39 -0.02 1.94 16 39 H 0.10 1.76 7.93 -2.39 -0.02 1.74 16 40 H 0.08 2.23 5.92 -2.39 -0.01 2.22 16 41 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 42 H 0.38 18.16 7.71 -92.71 -0.71 17.44 16 43 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -59.99 366.20 5.07 -54.92 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.33 Total: 25.67 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 4.51 Total: 10.24 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -4.09 Total: -107.77 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.05 Total: -19.51 kcal Atomic # 9 Polarization: -11.17 SS G_CDS: 2.34 Total: -8.83 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -59.99 5.07 -54.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939815559.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.978 kcal (2) G-P(sol) polarization free energy of solvation -59.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds